PDB Chemical Component VES
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for VES
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N5 |
C4 |
1.470 |
1.475 |
N5 |
C1 |
1.474 |
1.479 |
C4 |
C3 |
1.518 |
1.542 |
C3 |
C2 |
1.541 |
1.551 |
C2 |
C1 |
1.531 |
1.549 |
C4 |
H41C |
1.100 |
1.090 |
C4 |
H42C |
1.100 |
1.091 |
C1 |
H11C |
1.100 |
1.090 |
C1 |
H12C |
1.099 |
1.091 |
C3 |
H31C |
1.100 |
1.090 |
C3 |
H32C |
1.100 |
1.090 |
C2 |
H21C |
1.100 |
1.090 |
C2 |
H22C |
1.100 |
1.090 |
N5 |
H2 |
1.000 |
1.009 |
Bond Angles for VES
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C4 |
N5 |
C1 |
115.4 |
108.5 |
N5 |
C4 |
C3 |
102.8 |
107.3 |
N5 |
C4 |
H41C |
111.1 |
109.9 |
N5 |
C4 |
H42C |
111.1 |
109.9 |
C4 |
N5 |
H2 |
108.0 |
111.0 |
N5 |
C1 |
C2 |
98.7 |
104.8 |
N5 |
C1 |
H11C |
112.1 |
110.4 |
N5 |
C1 |
H12C |
112.1 |
110.4 |
C1 |
N5 |
H2 |
108.0 |
111.0 |
C4 |
C3 |
C2 |
103.1 |
103.0 |
C3 |
C4 |
H41C |
111.1 |
109.9 |
C3 |
C4 |
H42C |
111.1 |
109.9 |
C4 |
C3 |
H31C |
111.0 |
110.7 |
C4 |
C3 |
H32C |
111.0 |
110.7 |
C3 |
C2 |
C1 |
105.3 |
101.6 |
C2 |
C3 |
H31C |
111.1 |
110.7 |
C2 |
C3 |
H32C |
111.1 |
110.7 |
C3 |
C2 |
H21C |
110.5 |
111.0 |
C3 |
C2 |
H22C |
110.5 |
111.0 |
C2 |
C1 |
H11C |
112.1 |
110.4 |
C2 |
C1 |
H12C |
112.1 |
110.4 |
C1 |
C2 |
H21C |
110.5 |
111.0 |
C1 |
C2 |
H22C |
110.5 |
111.0 |
H41C |
C4 |
H42C |
109.5 |
110.0 |
H11C |
C1 |
H12C |
109.5 |
110.4 |
H31C |
C3 |
H32C |
109.5 |
110.8 |
H21C |
C2 |
H22C |
109.5 |
110.9 |
Torsion Angles for VES
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C4 |
N5 |
C1 |
C2 |
340.0 |
335.9 |
C4 |
N5 |
C1 |
H11C |
98.2 |
94.8 |
C4 |
N5 |
C1 |
H12C |
221.8 |
217.1 |
C1 |
N5 |
C4 |
H2 |
239.1 |
237.8 |
N5 |
C4 |
C3 |
C2 |
24.8 |
22.3 |
C3 |
C4 |
N5 |
H41C |
241.1 |
240.5 |
C3 |
C4 |
N5 |
H42C |
118.9 |
119.4 |
N5 |
C4 |
C3 |
H31C |
143.8 |
140.7 |
N5 |
C4 |
C3 |
H32C |
265.9 |
263.9 |
H41C |
C4 |
N5 |
H42C |
237.8 |
238.9 |
C1 |
N5 |
C4 |
C3 |
357.0 |
1.0 |
C1 |
N5 |
C4 |
H41C |
115.9 |
120.4 |
C1 |
N5 |
C4 |
H42C |
238.0 |
241.6 |
C4 |
N5 |
C1 |
H2 |
120.9 |
122.2 |
C3 |
C2 |
C1 |
N5 |
34.8 |
37.1 |
C2 |
C1 |
N5 |
H11C |
241.8 |
241.1 |
C2 |
C1 |
N5 |
H12C |
118.2 |
118.8 |
N5 |
C1 |
C2 |
H21C |
275.4 |
279.0 |
N5 |
C1 |
C2 |
H22C |
154.1 |
155.2 |
H11C |
C1 |
N5 |
H12C |
236.4 |
237.7 |
C3 |
C4 |
N5 |
C1 |
357.0 |
1.0 |
N5 |
C4 |
C3 |
H41C |
118.9 |
119.4 |
N5 |
C4 |
C3 |
H42C |
241.1 |
240.6 |
C3 |
C4 |
N5 |
H2 |
117.8 |
123.2 |
C4 |
C3 |
C2 |
C1 |
321.5 |
324.4 |
C2 |
C3 |
C4 |
H31C |
241.0 |
241.6 |
C2 |
C3 |
C4 |
H32C |
119.0 |
118.4 |
C4 |
C3 |
C2 |
H21C |
80.8 |
82.4 |
C4 |
C3 |
C2 |
H22C |
202.1 |
206.3 |
H41C |
C4 |
C3 |
H42C |
122.2 |
121.2 |
H31C |
C3 |
C4 |
H32C |
238.0 |
236.7 |
N5 |
C1 |
C2 |
C3 |
34.8 |
37.1 |
C2 |
C3 |
C4 |
H41C |
265.9 |
262.8 |
C2 |
C3 |
C4 |
H42C |
143.7 |
141.7 |
C4 |
C3 |
C2 |
H31C |
119.0 |
118.4 |
C4 |
C3 |
C2 |
H32C |
241.0 |
241.6 |
C3 |
C2 |
C1 |
H11C |
276.5 |
278.2 |
C3 |
C2 |
C1 |
H12C |
153.0 |
155.9 |
C1 |
C2 |
C3 |
H21C |
240.6 |
241.9 |
C1 |
C2 |
C3 |
H22C |
119.3 |
118.1 |
H31C |
C3 |
C2 |
H32C |
122.1 |
123.2 |
H21C |
C2 |
C3 |
H22C |
238.7 |
236.2 |
N5 |
C1 |
C2 |
H11C |
118.2 |
118.9 |
N5 |
C1 |
C2 |
H12C |
241.8 |
241.2 |
C2 |
C1 |
N5 |
H2 |
219.1 |
213.7 |
C1 |
C2 |
C3 |
H31C |
202.5 |
206.0 |
C1 |
C2 |
C3 |
H32C |
80.4 |
82.8 |
C3 |
C2 |
C1 |
H21C |
119.3 |
118.1 |
C3 |
C2 |
C1 |
H22C |
240.7 |
241.8 |
H11C |
C1 |
C2 |
H12C |
123.6 |
122.3 |
H21C |
C2 |
C1 |
H22C |
121.3 |
123.8 |
H41C |
C4 |
N5 |
C1 |
115.9 |
120.4 |
N5 |
C4 |
H41C |
C3 |
246.3 |
242.2 |
N5 |
C4 |
H41C |
H42C |
123.1 |
121.0 |
H41C |
C4 |
N5 |
H2 |
236.7 |
242.6 |
H41C |
C4 |
C3 |
C2 |
265.9 |
262.8 |
C3 |
C4 |
H41C |
H42C |
236.9 |
238.9 |
H41C |
C4 |
C3 |
H31C |
24.9 |
21.2 |
H41C |
C4 |
C3 |
H32C |
147.0 |
144.5 |
H42C |
C4 |
N5 |
C1 |
238.0 |
241.6 |
N5 |
C4 |
H42C |
C3 |
113.8 |
117.8 |
N5 |
C4 |
H42C |
H41C |
236.9 |
239.0 |
H42C |
C4 |
N5 |
H2 |
358.9 |
3.8 |
H42C |
C4 |
C3 |
C2 |
143.7 |
141.7 |
C3 |
C4 |
H42C |
H41C |
123.1 |
121.1 |
H42C |
C4 |
C3 |
H31C |
262.7 |
260.1 |
H42C |
C4 |
C3 |
H32C |
24.8 |
23.3 |
N5 |
C1 |
H11C |
C2 |
250.0 |
244.6 |
N5 |
C1 |
H11C |
H12C |
125.0 |
122.3 |
H11C |
C1 |
N5 |
H2 |
337.3 |
332.6 |
C2 |
C1 |
H11C |
H12C |
235.0 |
237.7 |
H11C |
C1 |
C2 |
H21C |
157.2 |
160.1 |
H11C |
C1 |
C2 |
H22C |
35.9 |
36.3 |
N5 |
C1 |
H12C |
C2 |
110.0 |
115.4 |
N5 |
C1 |
H12C |
H11C |
235.0 |
237.7 |
H12C |
C1 |
N5 |
H2 |
100.9 |
94.9 |
C2 |
C1 |
H12C |
H11C |
125.0 |
122.3 |
H12C |
C1 |
C2 |
H21C |
33.7 |
37.8 |
H12C |
C1 |
C2 |
H22C |
272.3 |
274.0 |
C4 |
C3 |
H31C |
C2 |
245.9 |
246.4 |
H31C |
C3 |
C4 |
H41C |
24.9 |
21.2 |
H31C |
C3 |
C4 |
H42C |
262.7 |
260.1 |
C4 |
C3 |
H31C |
H32C |
123.0 |
123.2 |
H31C |
C3 |
C2 |
C1 |
202.5 |
206.0 |
C2 |
C3 |
H31C |
H32C |
237.0 |
236.9 |
H31C |
C3 |
C2 |
H21C |
321.8 |
324.0 |
H31C |
C3 |
C2 |
H22C |
83.2 |
87.8 |
C4 |
C3 |
H32C |
C2 |
114.0 |
113.6 |
H32C |
C3 |
C4 |
H41C |
147.0 |
144.5 |
H32C |
C3 |
C4 |
H42C |
24.8 |
23.3 |
C4 |
C3 |
H32C |
H31C |
237.0 |
236.8 |
H32C |
C3 |
C2 |
C1 |
80.4 |
82.8 |
C2 |
C3 |
H32C |
H31C |
123.0 |
123.2 |
H32C |
C3 |
C2 |
H21C |
199.8 |
200.8 |
H32C |
C3 |
C2 |
H22C |
321.1 |
324.6 |
C3 |
C2 |
H21C |
C1 |
243.8 |
247.8 |
H21C |
C2 |
C3 |
H31C |
321.8 |
324.0 |
H21C |
C2 |
C3 |
H32C |
199.8 |
200.8 |
C3 |
C2 |
H21C |
H22C |
121.9 |
123.9 |
H21C |
C2 |
C1 |
H11C |
157.2 |
160.1 |
H21C |
C2 |
C1 |
H12C |
33.7 |
37.8 |
C1 |
C2 |
H21C |
H22C |
238.1 |
236.2 |
C3 |
C2 |
H22C |
C1 |
116.2 |
112.3 |
H22C |
C2 |
C3 |
H31C |
83.2 |
87.8 |
H22C |
C2 |
C3 |
H32C |
321.1 |
324.6 |
C3 |
C2 |
H22C |
H21C |
238.1 |
236.1 |
H22C |
C2 |
C1 |
H11C |
35.9 |
36.3 |
H22C |
C2 |
C1 |
H12C |
272.3 |
274.0 |
C1 |
C2 |
H22C |
H21C |
121.9 |
123.8 |
C4 |
N5 |
H2 |
C1 |
234.6 |
239.3 |
H2 |
N5 |
C4 |
C3 |
117.8 |
123.2 |
H2 |
N5 |
C4 |
H41C |
236.7 |
242.6 |
H2 |
N5 |
C4 |
H42C |
358.9 |
3.8 |
H2 |
N5 |
C1 |
C2 |
219.1 |
213.7 |
H2 |
N5 |
C1 |
H11C |
337.3 |
332.6 |
H2 |
N5 |
C1 |
H12C |
100.9 |
94.9 |