PDB Chemical Component VEK

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for VEK

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C01 C02 1.552 1.507
C02 C03 1.446 1.355
C02 O29 1.454 1.340
C03 C04 1.502 1.414
C04 C05 1.546 1.507
C04 N28 1.416 1.302
C05 N06 1.452 1.470
N06 C07 1.476 1.469
N06 C27 1.466 1.469
C07 C08 1.525 1.530
C08 N09 1.464 1.470
N09 C10 1.503 1.393
N09 C26 1.504 1.470
C10 C11 1.383 1.394
C10 C25 1.478 1.396
C11 BR 1.939 1.891
C11 C13 1.464 1.383
C13 N14 1.411 1.316
N14 C15 1.418 1.335
C15 N16 1.371 1.349
C15 C25 1.425 1.404
N16 C17 1.421 1.314
C17 C18 1.405 1.472
C17 N24 1.384 1.369
C18 C19 1.433 1.365
C18 N22 1.364 1.379
C19 N20 1.365 1.335
N20 C21 1.394 1.307
C21 N22 1.408 1.348
N22 C23 1.472 1.465
N24 C25 1.397 1.383
C26 C27 1.568 1.530
N28 O29 1.485 1.210
C01 H01 1.100 1.089
C01 H01A 1.100 1.090
C01 H01B 1.100 1.091
C03 H03 1.080 1.081
C05 H05 1.100 1.090
C05 H05A 1.100 1.090
C07 H07 1.100 1.089
C07 H07A 1.100 1.090
C08 H08 1.100 1.090
C08 H08A 1.100 1.090
C13 H13 1.080 1.080
C19 H19 1.080 1.081
C21 H21 1.080 1.080
C23 H23 1.100 1.090
C23 H23A 1.100 1.090
C23 H23B 1.100 1.090
N24 HN24 1.000 0.970
C26 H26 1.100 1.090
C26 H26A 1.100 1.089
C27 H27 1.100 1.090
C27 H27A 1.100 1.090

Bond Angles for VEK

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C01 C02 C03 127.4 126.8
C01 C02 O29 124.3 126.8
C02 C01 H01 109.5 109.5
C02 C01 H01A 109.5 109.5
C02 C01 H01B 109.5 109.4
C03 C02 O29 108.3 106.4
C02 C03 C04 107.1 104.0
C02 C03 H03 126.5 128.0
C02 O29 N28 108.2 111.6
C03 C04 C05 126.8 126.8
C03 C04 N28 108.7 106.4
C04 C03 H03 126.5 128.0
C05 C04 N28 124.4 126.8
C04 C05 N06 104.9 109.5
C04 C05 H05 110.6 109.5
C04 C05 H05A 110.6 109.5
C04 N28 O29 107.8 111.6
C05 N06 C07 114.4 111.0
C05 N06 C27 117.5 111.0
N06 C05 H05 110.6 109.4
N06 C05 H05A 110.6 109.5
C07 N06 C27 114.4 110.9
N06 C07 C08 111.9 109.4
N06 C07 H07 108.8 109.5
N06 C07 H07A 108.8 109.5
N06 C27 C26 112.2 109.4
N06 C27 H27 108.8 109.5
N06 C27 H27A 108.8 109.5
C07 C08 N09 113.8 109.4
C08 C07 H07 108.8 109.5
C08 C07 H07A 108.9 109.5
C07 C08 H08 108.4 109.5
C07 C08 H08A 108.4 109.5
C08 N09 C10 121.0 111.0
C08 N09 C26 114.5 110.8
N09 C08 H08 108.3 109.5
N09 C08 H08A 108.4 109.5
C10 N09 C26 112.3 111.0
N09 C10 C11 120.4 121.0
N09 C10 C25 121.7 120.9
N09 C26 C27 113.5 109.4
N09 C26 H26 108.4 109.5
N09 C26 H26A 108.5 109.5
C11 C10 C25 117.6 118.1
C10 C11 BR 121.6 120.3
C10 C11 C13 122.0 119.4
C10 C25 C15 120.2 119.4
C10 C25 N24 132.7 134.2
BR C11 C13 116.1 120.3
C11 C13 N14 119.7 121.5
C11 C13 H13 120.1 119.3
C13 N14 C15 119.5 121.7
N14 C13 H13 120.1 119.2
N14 C15 N16 130.5 133.0
N14 C15 C25 121.0 120.0
N16 C15 C25 108.5 107.1
C15 N16 C17 107.7 109.9
C15 C25 N24 107.2 106.4
N16 C17 C18 124.1 125.2
N16 C17 N24 108.2 109.6
C18 C17 N24 127.5 125.2
C17 C18 C19 123.2 126.8
C17 C18 N22 128.1 126.8
C17 N24 C25 108.4 107.0
C17 N24 HN24 125.8 126.5
C19 C18 N22 108.6 106.4
C18 C19 N20 107.1 107.8
C18 C19 H19 126.5 126.0
C18 N22 C21 107.3 107.1
C18 N22 C23 127.5 126.5
C19 N20 C21 108.7 109.6
N20 C19 H19 126.4 126.1
N20 C21 N22 108.2 109.1
N20 C21 H21 125.9 125.4
C21 N22 C23 125.2 126.5
N22 C21 H21 125.9 125.5
N22 C23 H23 109.5 109.5
N22 C23 H23A 109.4 109.5
N22 C23 H23B 109.4 109.5
C25 N24 HN24 125.8 126.5
C27 C26 H26 108.5 109.5
C27 C26 H26A 108.4 109.5
C26 C27 H27 108.8 109.5
C26 C27 H27A 108.8 109.5
H01 C01 H01A 109.5 109.6
H01 C01 H01B 109.4 109.5
H01A C01 H01B 109.5 109.4
H05 C05 H05A 109.5 109.4
H07 C07 H07A 109.5 109.5
H08 C08 H08A 109.5 109.5
H23 C23 H23A 109.5 109.5
H23 C23 H23B 109.5 109.5
H23A C23 H23B 109.5 109.4
H26 C26 H26A 109.5 109.5
H27 C27 H27A 109.5 109.5

Torsion Angles for VEK

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C03 C02 C01 O29 179.2 180.3
C01 C02 C03 C04 180.8 180.0
C01 C02 C03 H03 0.8 360.0
C01 C02 O29 N28 178.8 179.8
H01 C01 C02 H01A 240.0 239.9
H01 C01 C02 H01B 120.0 120.0
H01A C01 C02 H01B 240.0 240.1
C01 C02 C03 O29 180.7 179.8
C03 C02 C01 H01 179.2 89.9
C03 C02 C01 H01A 299.2 210.0
C03 C02 C01 H01B 59.2 330.0
C03 C02 O29 N28 359.5 359.6
C02 C03 C04 C05 176.8 180.0
C02 C03 C04 N28 0.4 0.0
C04 C03 C02 H03 180.0 180.0
C01 C02 O29 C03 179.3 180.2
O29 C02 C01 H01 360.0 269.6
O29 C02 C01 H01A 120.0 29.8
O29 C02 C01 H01B 240.0 149.7
O29 C02 C03 C04 0.1 0.2
O29 C02 C03 H03 180.1 180.2
C04 N28 O29 C02 0.7 0.5
C04 C03 C02 O29 0.1 0.2
C02 C03 C04 H03 180.0 180.0
C05 C04 C03 N28 176.4 180.0
C03 C04 C05 N06 266.7 95.1
C03 C04 C05 H05 26.0 215.0
C03 C04 C05 H05A 147.4 335.0
C03 C04 N28 O29 359.3 359.7
C03 C04 C05 N28 184.1 180.0
C05 C04 C03 H03 356.8 0.1
C05 C04 N28 O29 182.8 179.7
C04 C05 N06 C07 239.4 190.0
C04 C05 N06 C27 100.9 66.2
N06 C05 C04 H05 240.7 240.1
N06 C05 C04 H05A 119.3 120.1
H05 C05 C04 H05A 238.6 240.0
C02 O29 N28 C04 0.7 0.5
C03 C04 N28 C05 176.5 180.0
N28 C04 C03 H03 180.4 180.0
N28 C04 C05 N06 82.6 275.1
N28 C04 C05 H05 201.9 35.0
N28 C04 C05 H05A 323.3 155.0
N06 C05 C04 N28 82.6 275.1
C04 C05 N06 H05 119.3 120.0
C04 C05 N06 H05A 240.7 239.9
C07 N06 C05 C27 138.5 123.8
C05 N06 C07 C08 159.7 295.4
C05 N06 C07 H07 280.1 55.4
C05 N06 C07 H07A 39.4 175.5
C05 N06 C27 C26 162.4 64.6
C05 N06 C27 H27 282.8 184.5
C05 N06 C27 H27A 42.0 304.6
H05 C05 N06 H05A 121.4 119.9
C05 N06 C07 C27 220.2 236.1
C07 N06 C05 H05 120.1 70.0
C07 N06 C05 H05A 358.7 310.1
C07 N06 C27 C26 23.9 300.7
C07 N06 C27 H27 144.3 60.6
C07 N06 C27 H27A 263.5 180.7
N06 C07 C08 N09 38.7 301.6
C08 C07 N06 H07 239.7 240.0
C08 C07 N06 H07A 120.4 119.9
N06 C07 C08 H08 159.3 61.6
N06 C07 C08 H08A 278.1 181.7
H07 C07 N06 H07A 240.7 239.9
C05 N06 C27 C07 138.5 123.9
C27 N06 C05 H05 341.6 306.2
C27 N06 C05 H05A 220.2 186.2
C27 N06 C07 C08 299.5 59.3
C27 N06 C07 H07 59.8 179.3
C27 N06 C07 H07A 179.1 299.4
N09 C26 C27 N06 30.5 58.4
N06 C27 C26 H26 269.9 298.4
N06 C27 C26 H26A 151.2 178.4
C26 C27 N06 H27 239.6 240.1
C26 C27 N06 H27A 120.4 120.0
H27 C27 N06 H27A 240.8 239.9
C08 C07 N06 C27 299.5 59.3
N06 C07 C08 H07 120.3 120.0
N06 C07 C08 H07A 239.7 240.1
C07 C08 N09 C10 155.3 183.2
C07 C08 N09 C26 15.8 59.3
N09 C08 C07 H08 239.4 240.0
N09 C08 C07 H08A 120.7 120.0
H07 C07 C08 H07A 119.3 120.1
H08 C08 C07 H08A 241.3 240.0
N09 C08 C07 H07 278.4 181.6
N09 C08 C07 H07A 159.1 61.5
C07 C08 N09 H08 120.6 120.0
C07 C08 N09 H08A 239.3 240.0
C10 N09 C08 C26 139.5 123.9
C08 N09 C10 C11 159.1 118.1
C08 N09 C10 C25 333.2 297.8
C08 N09 C26 C27 308.5 300.7
C08 N09 C26 H26 69.1 60.7
C08 N09 C26 H26A 187.9 180.7
H08 C08 N09 H08A 118.7 120.0
C08 N09 C10 C26 219.7 236.2
C10 N09 C08 H08 34.7 63.2
C10 N09 C08 H08A 276.0 303.2
C10 N09 C26 C27 165.4 176.8
C10 N09 C26 H26 286.1 296.8
C10 N09 C26 H26A 44.9 56.8
C11 C10 N09 C25 185.9 180.3
N09 C10 C11 BR 350.1 360.0
N09 C10 C11 C13 175.6 180.0
N09 C10 C25 C15 184.9 179.7
N09 C10 C25 N24 5.1 0.8
N06 C27 C26 N09 30.5 58.4
C08 N09 C26 C10 143.0 123.9
C26 N09 C08 H08 255.2 299.3
C26 N09 C08 H08A 136.5 179.3
C26 N09 C10 C11 299.4 241.9
C26 N09 C10 C25 113.5 61.6
C27 C26 N09 H26 239.4 240.1
C27 C26 N09 H26A 120.6 120.0
N09 C26 C27 H27 270.2 298.4
N09 C26 C27 H27A 150.9 178.4
H26 C26 N09 H26A 241.2 239.9
C11 C10 N09 C26 299.4 241.9
N09 C10 C11 C25 174.3 179.7
C11 C10 C25 C15 359.2 359.4
C11 C10 C25 N24 179.4 180.5
BR C11 C10 C13 174.5 179.9
C10 C11 C13 N14 359.2 359.9
C10 C11 C13 H13 179.1 180.0
C25 C10 N09 C26 113.5 61.6
N09 C10 C25 C11 185.7 180.3
C25 C10 C11 BR 175.7 180.3
C25 C10 C11 C13 1.3 0.4
N14 C15 C25 C10 360.0 0.5
N16 C15 C25 C10 180.0 180.4
C15 C25 C10 N24 179.7 178.9
C17 N24 C25 C10 180.2 179.5
C10 C25 N24 HN24 0.2 359.1
BR C11 C10 C25 175.7 180.3
C10 C11 BR C13 185.2 180.1
BR C11 C13 N14 184.4 180.0
BR C11 C13 H13 4.4 0.0
C13 C11 C10 C25 1.3 0.4
C10 C11 C13 BR 174.7 179.9
C11 C13 N14 C15 359.9 0.0
N14 C13 C11 H13 180.0 180.0
C11 C13 N14 H13 180.0 180.0
C13 N14 C15 N16 180.4 179.9
C13 N14 C15 C25 0.5 359.7
C10 C25 C15 N14 360.0 0.5
C15 N14 C13 H13 179.9 180.0
N16 C15 N14 C25 179.9 180.2
N14 C15 N16 C17 180.0 180.0
N14 C15 C25 N24 179.8 179.7
C10 C25 C15 N16 180.0 180.4
N14 C15 N16 C25 180.1 179.8
N16 C15 C25 N24 359.8 359.6
C15 N16 C17 C18 176.2 180.0
C15 N16 C17 N24 0.3 0.1
C10 C25 C15 N24 180.2 180.8
N14 C15 C25 N16 179.9 180.2
C25 C15 N16 C17 359.9 0.2
C17 N24 C25 C15 0.4 0.5
C15 C25 N24 HN24 180.4 180.1
C17 N16 C15 C25 359.9 0.2
C18 C17 N16 N24 175.9 179.9
N16 C17 C18 C19 347.6 354.0
N16 C17 C18 N22 171.9 173.7
N16 C17 N24 C25 359.5 359.7
N16 C17 N24 HN24 179.5 180.0
N16 C17 C18 N24 184.9 180.1
C18 C17 N24 C25 183.8 179.7
C18 C17 N24 HN24 3.8 0.1
C19 C18 C17 N22 175.7 180.3
C17 C18 C19 N20 183.2 180.0
C17 C18 C19 H19 3.2 359.9
C17 C18 N22 C21 176.5 179.9
C17 C18 N22 C23 356.3 0.0
C10 C25 N24 C17 180.2 179.5
C15 C25 N24 C17 0.4 0.5
N16 C17 N24 C18 175.7 179.9
N24 C17 C18 C19 162.7 174.0
N24 C17 C18 N22 347.0 353.6
C25 N24 C17 HN24 180.0 179.7
C19 C18 C17 N24 162.7 174.0
C17 C18 C19 N22 183.6 179.7
C19 C18 N22 C21 0.3 359.6
C19 C18 N22 C23 180.1 179.7
C18 C19 N20 C21 0.3 360.0
N20 C19 C18 H19 180.0 180.0
N22 C18 C17 N24 347.0 353.6
C17 C18 N22 C19 176.2 180.3
N22 C18 C19 N20 359.6 0.3
N22 C18 C19 H19 179.6 180.2
N20 C21 N22 C18 359.9 0.4
C21 N22 C18 C23 180.3 179.9
C18 N22 C21 H21 179.9 180.1
C18 N22 C23 H23 180.0 84.5
C18 N22 C23 H23A 300.0 204.5
C18 N22 C23 H23B 60.0 324.5
N20 C19 C18 N22 359.6 0.3
C18 C19 N20 H19 180.0 180.0
C19 N20 C21 N22 359.9 359.8
C19 N20 C21 H21 179.8 180.0
C18 N22 C21 N20 359.9 0.4
C21 N20 C19 H19 180.3 180.0
N20 C21 N22 C23 180.1 180.3
N22 C21 N20 H21 180.0 179.7
C18 N22 C21 C23 179.8 180.1
N20 C21 N22 H21 180.0 180.3
C21 N22 C23 H23 359.7 264.6
C21 N22 C23 H23A 119.7 24.7
C21 N22 C23 H23B 239.7 144.6
C18 N22 C23 C21 180.3 179.8
C23 N22 C21 H21 0.1 0.0
H23 C23 N22 H23A 240.0 239.9
H23 C23 N22 H23B 120.0 120.0
H23A C23 N22 H23B 240.0 240.0
C10 C25 N24 C15 179.8 179.0
C17 N24 C25 HN24 180.0 180.3
N06 C27 C26 H27 120.4 119.9
N06 C27 C26 H27A 239.6 240.0
N09 C26 C27 H26 120.6 119.9
N09 C26 C27 H26A 239.4 240.0
H26 C26 C27 H26A 118.8 120.1
H27 C27 C26 H27A 119.2 120.1
H01 C01 C02 C03 179.2 89.9
H01 C01 C02 O29 360.0 269.6
C02 C01 H01 H01A 120.0 120.0
C02 C01 H01 H01B 240.0 240.0
H01A C01 H01 H01B 120.0 120.0
H01A C01 C02 C03 299.2 210.0
H01A C01 C02 O29 120.0 29.8
C02 C01 H01A H01 240.0 240.0
C02 C01 H01A H01B 120.0 119.9
H01 C01 H01A H01B 240.0 240.0
H01B C01 C02 C03 59.2 330.0
H01B C01 C02 O29 240.0 149.7
C02 C01 H01B H01 120.0 120.0
C02 C01 H01B H01A 240.0 240.0
H01 C01 H01B H01A 120.0 120.1
H03 C03 C02 O29 180.1 180.2
C02 C03 H03 C04 180.0 180.0
H03 C03 C04 C05 356.8 0.1
H03 C03 C04 N28 180.4 180.0
H05 C05 C04 N28 201.9 35.0
C04 C05 H05 N06 244.2 240.0
C04 C05 H05 H05A 122.1 120.0
H05 C05 N06 C07 120.1 70.0
H05 C05 N06 C27 341.6 306.2
N06 C05 H05 H05A 237.9 240.0
H05A C05 C04 N28 323.3 155.0
C04 C05 H05A N06 115.8 120.0
C04 C05 H05A H05 237.9 240.0
H05A C05 N06 C07 358.7 310.1
H05A C05 N06 C27 220.2 186.2
N06 C05 H05A H05 122.1 120.0
H07 C07 N06 C27 59.8 179.3
N06 C07 H07 C08 237.8 240.1
N06 C07 H07 H07A 118.9 120.0
H07 C07 C08 N09 278.4 181.6
C08 C07 H07 H07A 241.1 240.0
H07 C07 C08 H08 39.0 301.6
H07 C07 C08 H08A 157.7 61.6
H07A C07 N06 C27 179.1 299.4
N06 C07 H07A C08 122.2 119.9
N06 C07 H07A H07 241.1 239.9
H07A C07 C08 N09 159.1 61.5
C08 C07 H07A H07 118.9 120.1
H07A C07 C08 H08 279.7 181.6
H07A C07 C08 H08A 38.4 301.6
C07 C08 H08 N09 236.0 240.0
H08 C08 C07 H07 39.0 301.6
H08 C08 C07 H07A 279.7 181.6
C07 C08 H08 H08A 118.0 120.0
H08 C08 N09 C10 34.7 63.2
H08 C08 N09 C26 255.2 299.3
N09 C08 H08 H08A 242.0 240.0
C07 C08 H08A N09 124.0 119.9
H08A C08 C07 H07 157.7 61.6
H08A C08 C07 H07A 38.4 301.6
C07 C08 H08A H08 242.0 240.0
H08A C08 N09 C10 276.0 303.2
H08A C08 N09 C26 136.5 179.3
N09 C08 H08A H08 118.0 120.0
C11 C13 H13 N14 180.0 180.0
H13 C13 N14 C15 179.9 180.0
H19 C19 C18 N22 179.6 180.2
C18 C19 H19 N20 180.0 180.1
H19 C19 N20 C21 180.3 180.0
N20 C21 H21 N22 180.0 179.7
H21 C21 N22 C23 0.1 0.0
N22 C23 H23 H23A 120.0 120.1
N22 C23 H23 H23B 240.0 240.0
H23A C23 H23 H23B 120.0 119.9
N22 C23 H23A H23 240.0 240.0
N22 C23 H23A H23B 120.0 120.0
H23 C23 H23A H23B 240.0 240.0
N22 C23 H23B H23 120.0 120.0
N22 C23 H23B H23A 240.0 240.0
H23 C23 H23B H23A 120.0 120.0
C17 N24 HN24 C25 180.0 179.6
N09 C26 H26 C27 236.3 240.1
N09 C26 H26 H26A 118.2 120.1
C27 C26 H26 H26A 241.8 239.9
H26 C26 C27 H27 149.6 178.5
H26 C26 C27 H27A 30.4 58.4
N09 C26 H26A C27 123.7 119.9
N09 C26 H26A H26 241.8 240.0
C27 C26 H26A H26 118.2 120.0
H26A C26 C27 H27 30.8 58.4
H26A C26 C27 H27A 271.6 298.4
N06 C27 H27 C26 237.5 240.1
N06 C27 H27 H27A 118.8 120.0
H27 C27 C26 H26 149.6 178.5
H27 C27 C26 H26A 30.8 58.4
C26 C27 H27 H27A 241.2 239.9
N06 C27 H27A C26 122.5 119.9
N06 C27 H27A H27 241.2 240.0
H27A C27 C26 H26 30.4 58.4
H27A C27 C26 H26A 271.6 298.4
C26 C27 H27A H27 118.8 120.0