PDB Chemical Component VAZ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for VAZ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
SAQ CAY 1.921 1.813
SAQ CAA 1.870 1.814
CAY OAJ 1.435 1.429
CAY CAZ 1.502 1.530
CAZ CAU 1.582 1.507
CAZ OAP 1.439 1.453
CAU OAI 1.284 1.209
CAU OAE 1.296 1.342
OAP CAV 1.320 1.342
CAV OAF 1.147 1.208
CAV CAX 1.509 1.507
CAX CAN 1.527 1.530
CAX NAO 1.448 1.465
CAN SAR 1.808 1.814
SAR OAG 1.341 1.421
NAO CAS 1.324 1.347
CAS OAC 1.257 1.213
CAS CAL 1.467 1.506
CAL CAK 1.544 1.530
CAK CB 1.570 1.531
CB CA 1.455 1.530
CA C 1.521 1.507
CA N 1.439 1.469
C OXT 1.228 1.208
C O 1.233 1.343
CAA HAA1 1.100 1.090
CAA HAA2 1.100 1.089
CAA HAA3 1.100 1.090
OAJ HAJ 0.950 0.967
CAZ HAZ 1.100 1.090
OAE HAE 0.950 0.967
CAX HAX 1.100 1.089
CAN HAN1 1.100 1.089
CAN HAN2 1.100 1.091
NAO HAO 1.000 0.970
CAL HAL1 1.100 1.090
CAL HAL2 1.100 1.090
CAK HAK1 1.100 1.089
CAK HAK2 1.100 1.090
CB HBC1 1.100 1.090
CB HBC2 1.100 1.090
CA HA 1.100 1.090
N HN1 1.000 1.009
N HN2 1.000 1.010
O H 0.950 0.967
CAY HAY 1.100 1.090
SAR HAR 1.300 1.344

Bond Angles for VAZ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CAY SAQ CAA 100.3 103.0
SAQ CAY OAJ 124.2 109.5
SAQ CAY CAZ 121.2 109.5
SAQ CAY HAY 83.5 109.5
SAQ CAA HAA1 109.5 109.5
SAQ CAA HAA2 109.5 109.5
SAQ CAA HAA3 109.5 109.5
OAJ CAY CAZ 99.1 109.5
CAY OAJ HAJ 109.5 114.0
OAJ CAY HAY 112.8 109.4
CAY CAZ CAU 126.2 109.5
CAY CAZ OAP 90.6 109.5
CAY CAZ HAZ 112.0 109.5
CAZ CAY HAY 116.6 109.5
CAU CAZ OAP 109.3 109.4
CAZ CAU OAI 113.2 120.0
CAZ CAU OAE 122.6 120.0
CAU CAZ HAZ 94.2 109.5
CAZ OAP CAV 113.5 117.0
OAP CAZ HAZ 128.2 109.5
OAI CAU OAE 124.2 120.0
CAU OAE HAE 109.5 117.0
OAP CAV OAF 126.1 120.0
OAP CAV CAX 113.1 120.0
OAF CAV CAX 120.8 120.0
CAV CAX CAN 114.6 109.5
CAV CAX NAO 110.9 109.5
CAV CAX HAX 103.1 109.4
CAN CAX NAO 103.0 109.5
CAX CAN SAR 109.7 109.5
CAN CAX HAX 111.0 109.5
CAX CAN HAN1 109.4 109.5
CAX CAN HAN2 109.4 109.4
CAX NAO CAS 123.9 120.0
NAO CAX HAX 114.7 109.5
CAX NAO HAO 118.1 120.0
CAN SAR OAG 92.0 109.5
SAR CAN HAN1 109.4 109.5
SAR CAN HAN2 109.4 109.5
CAN SAR HAR 115.8 103.0
OAG SAR HAR 115.8 103.0
NAO CAS OAC 120.9 120.0
NAO CAS CAL 114.9 120.0
CAS NAO HAO 118.1 120.0
OAC CAS CAL 123.0 120.0
CAS CAL CAK 111.3 109.5
CAS CAL HAL1 108.9 109.5
CAS CAL HAL2 108.4 109.5
CAL CAK CB 105.9 109.5
CAK CAL HAL1 108.9 109.5
CAK CAL HAL2 108.5 109.4
CAL CAK HAK1 110.7 109.5
CAL CAK HAK2 111.5 109.5
CAK CB CA 114.4 109.5
CB CAK HAK1 110.7 109.4
CB CAK HAK2 111.5 109.5
CAK CB HBC1 107.9 109.5
CAK CB HBC2 106.8 109.5
CB CA C 108.4 109.5
CB CA N 116.1 109.4
CA CB HBC1 107.9 109.4
CA CB HBC2 106.8 109.5
CB CA HA 106.3 109.5
C CA N 111.3 109.5
CA C OXT 117.0 120.0
CA C O 119.1 120.0
C CA HA 111.6 109.5
N CA HA 103.0 109.4
CA N HN1 109.5 111.0
CA N HN2 109.5 111.0
OXT C O 123.8 120.0
C O H 109.5 116.9
HAA1 CAA HAA2 109.4 109.5
HAA1 CAA HAA3 109.4 109.4
HAA2 CAA HAA3 109.5 109.5
HAN1 CAN HAN2 109.6 109.5
HAL1 CAL HAL2 110.9 109.5
HAK1 CAK HAK2 106.7 109.5
HBC1 CB HBC2 113.3 109.5
HN1 N HN2 109.4 110.9

Torsion Angles for VAZ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CAY SAQ CAA HAA1 91.4 180.0
CAY SAQ CAA HAA2 211.4 300.0
CAY SAQ CAA HAA3 331.4 60.0
OAJ CAY SAQ CAZ 129.5 120.0
SAQ CAY OAJ HAJ 35.7 299.9
OAJ CAY SAQ HAY 246.8 240.0
SAQ CAY CAZ CAU 36.6 300.0
SAQ CAY CAZ OAP 281.9 180.0
SAQ CAY CAZ HAZ 149.8 60.0
CAZ CAY SAQ HAY 117.3 120.0
CAA SAQ CAY OAJ 31.1 295.0
CAA SAQ CAY CAZ 261.6 175.0
CAA SAQ CAY HAY 144.3 55.0
HAA1 CAA SAQ HAA2 240.0 240.0
HAA1 CAA SAQ HAA3 120.0 119.9
HAA2 CAA SAQ HAA3 240.0 239.9
OAJ CAY SAQ CAA 31.1 295.0
SAQ CAY OAJ CAZ 222.0 240.0
SAQ CAY OAJ HAY 97.9 120.0
OAJ CAY CAZ CAU 256.9 180.0
OAJ CAY CAZ OAP 142.2 60.0
OAJ CAY CAZ HAZ 10.1 300.0
CAZ CAY OAJ HAY 236.0 240.1
CAZ CAY SAQ CAA 261.6 175.0
SAQ CAY CAZ OAJ 139.7 120.0
SAQ CAY CAZ HAY 261.0 240.0
CAZ CAY OAJ HAJ 173.8 60.0
OAJ CAY CAZ HAY 121.2 119.9
CAU CAZ CAY OAP 114.7 120.0
CAY CAZ CAU OAI 242.4 245.0
CAY CAZ CAU OAE 61.1 65.0
CAU CAZ CAY HAZ 246.8 240.0
CAY CAZ OAP CAV 276.8 210.0
OAP CAZ CAY HAZ 132.1 120.0
CAY CAZ CAU OAP 254.4 240.0
CAY CAZ CAU HAZ 121.3 120.0
CAU CAZ CAY HAY 135.7 60.0
CAU CAZ OAP CAV 147.8 90.0
OAP CAZ CAU HAZ 226.9 240.0
OAI CAU CAZ OAE 181.2 179.9
CAZ CAU OAE HAE 181.4 180.0
CAY CAZ OAP CAU 129.0 120.0
CAY CAZ OAP HAZ 241.0 240.0
OAP CAZ CAY HAY 21.0 300.1
OAP CAZ CAU OAI 348.0 5.0
OAP CAZ CAU OAE 166.8 185.0
CAU CAZ OAP HAZ 112.0 120.0
CAZ OAP CAV OAF 339.3 0.0
CAZ OAP CAV CAX 160.1 180.0
OAI CAU CAZ OAP 348.0 5.0
CAZ CAU OAI OAE 178.8 180.1
OAI CAU CAZ HAZ 121.1 125.0
OAI CAU OAE HAE 0.0 0.1
OAE CAU CAZ OAP 166.8 185.0
CAZ CAU OAE OAI 181.3 179.9
OAE CAU CAZ HAZ 299.9 305.0
CAV OAP CAZ HAZ 35.8 330.0
OAF CAV OAP CAX 179.2 180.1
OAP CAV CAX CAN 301.1 300.0
OAP CAV CAX NAO 185.0 180.0
OAP CAV CAX HAX 61.7 60.0
OAP CAV OAF CAX 180.8 179.9
OAF CAV CAX CAN 121.8 120.0
OAF CAV CAX NAO 5.7 360.0
OAF CAV CAX HAX 242.5 240.0
OAP CAV CAX OAF 179.3 180.1
CAN CAX CAV NAO 116.1 120.0
CAV CAX CAN SAR 310.4 180.0
CAN CAX CAV HAX 239.3 240.0
CAV CAX CAN HAN1 70.4 300.0
CAV CAX CAN HAN2 190.4 60.0
CAV CAX NAO CAS 245.6 205.0
NAO CAX CAV HAX 123.3 120.0
CAV CAX NAO HAO 65.6 25.0
CAV CAX CAN NAO 239.5 240.0
CAV CAX CAN HAX 116.2 120.0
CAN CAX NAO CAS 122.5 85.0
NAO CAX CAN HAX 236.8 240.0
CAN CAX NAO HAO 302.5 265.0
CAX CAN SAR OAG 78.4 180.0
SAR CAN CAX HAN1 240.0 240.0
SAR CAN CAX HAN2 119.9 120.0
CAX CAN SAR HAR 198.4 289.1
HAN1 CAN CAX HAN2 239.9 240.0
CAV CAX NAO CAN 123.1 120.0
CAV CAX NAO HAX 243.7 240.0
NAO CAX CAN SAR 70.9 300.0
CAN CAX NAO HAX 120.7 120.1
NAO CAX CAN HAN1 190.9 60.0
NAO CAX CAN HAN2 311.0 180.0
CAX NAO CAS OAC 8.7 0.0
CAX NAO CAS CAL 176.9 180.0
CAS NAO CAX HAO 180.0 179.9
SAR CAN CAX NAO 70.9 300.0
SAR CAN CAX HAX 194.1 60.0
CAX CAN SAR HAN1 120.0 120.1
CAX CAN SAR HAN2 240.1 240.1
OAG SAR CAN HAR 240.0 250.9
HAN1 CAN SAR HAN2 120.1 120.0
OAG SAR CAN HAN1 318.4 59.9
OAG SAR CAN HAN2 198.3 299.9
CAN SAR OAG HAR 120.0 109.1
CAS NAO CAX HAX 1.8 324.9
CAX NAO CAS HAO 180.0 180.1
OAC CAS NAO CAL 191.8 180.1
NAO CAS CAL CAK 256.7 180.0
NAO CAS CAL HAL1 16.7 300.0
NAO CAS CAL HAL2 137.5 60.1
NAO CAS OAC CAL 167.3 179.9
OAC CAS NAO HAO 188.7 180.0
OAC CAS CAL CAK 64.7 360.0
OAC CAS CAL HAL1 184.7 120.0
OAC CAS CAL HAL2 305.4 240.0
NAO CAS CAL OAC 192.0 180.1
CAL CAS NAO HAO 356.9 359.9
CAS CAL CAK CB 179.6 180.0
CAK CAL CAS HAL1 240.0 240.0
CAK CAL CAS HAL2 119.2 120.0
CAS CAL CAK HAK1 299.6 300.0
CAS CAL CAK HAK2 58.2 60.0
HAL1 CAL CAS HAL2 239.3 240.0
CAS CAL CAK HAL1 120.0 120.1
CAS CAL CAK HAL2 240.8 240.0
CAL CAK CB CA 166.6 180.0
CB CAK CAL HAK1 240.0 240.0
CB CAK CAL HAK2 121.4 120.0
CAL CAK CB HBC1 286.7 300.0
CAL CAK CB HBC2 48.8 60.0
HAL1 CAL CAK HAL2 120.8 119.9
HAK1 CAK CAL HAK2 241.4 240.0
CB CAK CAL HAL1 59.6 60.0
CB CAK CAL HAL2 298.8 300.0
CAL CAK CB HAK1 120.0 120.0
CAL CAK CB HAK2 238.6 240.0
CAK CB CA C 182.3 175.0
CAK CB CA N 308.4 295.0
CA CB CAK HBC1 240.0 240.1
CA CB CAK HBC2 117.8 120.0
CAK CB CA HA 62.3 54.9
HAK1 CAK CB HAK2 118.6 120.0
HBC1 CB CAK HBC2 237.9 240.0
CA CB CAK HAK1 46.6 60.0
CA CB CAK HAK2 288.0 300.0
CAK CB CA HBC1 120.0 120.0
CAK CB CA HBC2 242.2 240.0
C CA CB N 233.9 240.0
CB CA C OXT 118.5 100.0
CB CA C O 295.8 280.0
C CA CB HA 120.0 120.1
N CA CB HA 246.1 240.1
CB CA N HN1 149.4 176.1
CB CA N HN2 269.4 299.9
HBC1 CB CA HBC2 122.1 120.0
CB CA C N 128.8 120.0
C CA CB HBC1 62.3 55.1
C CA CB HBC2 300.1 295.0
CB CA C HA 243.3 239.9
N CA C HA 114.5 120.0
C CA N HN1 274.0 296.1
C CA N HN2 34.0 59.9
OXT C CA O 182.6 180.0
CA C O H 182.8 180.0
CB CA N C 235.4 240.0
N CA CB HBC1 188.4 175.1
N CA CB HBC2 66.3 55.0
CB CA N HA 115.7 120.0
N CA C OXT 349.6 340.0
N CA C O 167.0 160.0
C CA N HA 240.3 240.0
HN1 N CA HN2 240.0 236.1
OXT C CA N 349.6 340.0
CA C OXT O 177.2 180.0
OXT C CA HA 235.1 220.0
OXT C O H 360.0 0.0
O C CA N 167.0 160.0
CA C O OXT 182.8 180.0
O C CA HA 52.5 40.1
SAQ CAA HAA1 HAA2 120.0 120.0
SAQ CAA HAA1 HAA3 240.0 240.0
HAA2 CAA HAA1 HAA3 120.0 120.0
SAQ CAA HAA2 HAA1 240.0 240.0
SAQ CAA HAA2 HAA3 120.0 120.0
HAA1 CAA HAA2 HAA3 240.0 240.0
SAQ CAA HAA3 HAA1 120.0 120.0
SAQ CAA HAA3 HAA2 240.0 240.0
HAA1 CAA HAA3 HAA2 120.0 120.0
HAJ OAJ CAY CAZ 173.8 60.0
HAJ OAJ CAY HAY 297.8 179.9
CAY CAZ HAZ CAU 228.1 240.0
CAY CAZ HAZ OAP 109.4 120.0
HAZ CAZ CAY HAY 248.8 180.1
CAU CAZ HAZ OAP 241.3 240.0
HAZ CAZ CAU OAI 121.1 125.0
HAZ CAZ CAU OAE 299.9 305.0
HAZ CAZ OAP CAV 35.8 330.0
CAV CAX HAX CAN 236.8 240.0
CAV CAX HAX NAO 120.7 120.0
CAN CAX HAX NAO 243.8 240.0
HAX CAX CAN SAR 194.1 60.0
HAX CAX CAN HAN1 314.1 180.1
HAX CAX CAN HAN2 74.2 300.0
HAX CAX NAO CAS 1.8 324.9
HAX CAX NAO HAO 181.8 145.0
HAN1 CAN CAX NAO 190.9 60.0
CAX CAN HAN1 SAR 239.8 240.0
HAN1 CAN CAX HAX 314.1 180.1
CAX CAN HAN1 HAN2 119.9 120.0
HAN1 CAN SAR OAG 318.4 59.9
SAR CAN HAN1 HAN2 240.1 240.0
HAN1 CAN SAR HAR 78.4 169.0
HAN2 CAN CAX NAO 311.0 180.0
CAX CAN HAN2 SAR 120.1 120.0
HAN2 CAN CAX HAX 74.2 300.0
CAX CAN HAN2 HAN1 240.1 240.0
HAN2 CAN SAR OAG 198.3 299.9
SAR CAN HAN2 HAN1 119.9 120.0
HAN2 CAN SAR HAR 318.3 49.0
CAX NAO HAO CAS 180.0 179.9
HAO NAO CAX HAX 181.8 145.0
HAO NAO CAS OAC 188.7 180.0
HAO NAO CAS CAL 356.9 359.9
CAS CAL HAL1 CAK 238.5 240.0
CAS CAL HAL1 HAL2 119.2 120.0
HAL1 CAL CAK CB 59.6 60.0
CAK CAL HAL1 HAL2 240.7 240.1
HAL1 CAL CAK HAK1 179.6 179.9
HAL1 CAL CAK HAK2 298.2 300.0
CAS CAL HAL2 CAK 121.0 120.0
CAS CAL HAL2 HAL1 240.5 239.9
HAL2 CAL CAK CB 298.8 300.0
CAK CAL HAL2 HAL1 119.5 119.9
HAL2 CAL CAK HAK1 58.8 60.0
HAL2 CAL CAK HAK2 177.4 180.0
CAL CAK HAK1 CB 242.9 240.0
HAK1 CAK CAL HAL1 179.6 179.9
HAK1 CAK CAL HAL2 58.8 60.0
CAL CAK HAK1 HAK2 121.5 120.0
HAK1 CAK CB CA 46.6 60.0
CB CAK HAK1 HAK2 238.6 240.0
HAK1 CAK CB HBC1 166.7 180.0
HAK1 CAK CB HBC2 288.8 300.0
CAL CAK HAK2 CB 118.1 120.0
HAK2 CAK CAL HAL1 298.2 300.0
HAK2 CAK CAL HAL2 177.4 180.0
CAL CAK HAK2 HAK1 239.0 240.0
HAK2 CAK CB CA 288.0 300.0
CB CAK HAK2 HAK1 120.9 120.0
HAK2 CAK CB HBC1 48.1 60.0
HAK2 CAK CB HBC2 170.2 180.0
CAK CB HBC1 CA 236.0 240.0
HBC1 CB CAK HAK1 166.7 180.0
HBC1 CB CAK HAK2 48.1 60.0
CAK CB HBC1 HBC2 118.0 120.0
HBC1 CB CA C 62.3 55.1
HBC1 CB CA N 188.4 175.1
CA CB HBC1 HBC2 242.0 240.0
HBC1 CB CA HA 302.3 295.0
CAK CB HBC2 CA 122.7 120.0
HBC2 CB CAK HAK1 288.8 300.0
HBC2 CB CAK HAK2 170.2 180.0
CAK CB HBC2 HBC1 241.4 240.0
HBC2 CB CA C 300.1 295.0
HBC2 CB CA N 66.3 55.0
CA CB HBC2 HBC1 118.6 120.0
HBC2 CB CA HA 180.1 175.0
CB CA HA C 118.0 120.1
CB CA HA N 237.5 240.1
HA CA CB HBC1 302.3 295.0
HA CA CB HBC2 180.1 175.0
C CA HA N 119.5 120.0
HA CA C OXT 235.1 220.0
HA CA C O 52.5 40.1
HA CA N HN1 33.7 56.1
HA CA N HN2 153.7 180.0
HN1 N CA HA 33.7 56.1
CA N HN1 HN2 120.0 123.9
HN2 N CA HA 153.7 180.0
CA N HN2 HN1 240.0 236.1
HAY CAY SAQ CAA 144.3 55.0
SAQ CAY HAY OAJ 235.5 240.0
SAQ CAY HAY CAZ 121.8 120.0
OAJ CAY HAY CAZ 246.3 240.0
HAY CAY OAJ HAJ 297.8 179.9
HAY CAY CAZ CAU 135.7 60.0
HAY CAY CAZ OAP 21.0 300.1
HAY CAY CAZ HAZ 248.8 180.1
CAN SAR HAR OAG 254.0 246.1
HAR SAR CAN HAN1 78.4 169.0
HAR SAR CAN HAN2 318.3 49.0