PDB Chemical Component VAH
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for VAH
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CA |
C |
1.531 |
1.507 |
| O |
C |
1.247 |
1.208 |
| C |
OXT |
1.253 |
1.343 |
| CA |
N |
1.469 |
1.469 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| CB |
CA |
1.530 |
1.530 |
| CA |
HA |
1.100 |
1.090 |
| OG1 |
CB |
1.429 |
1.429 |
| CB |
CG2 |
1.531 |
1.530 |
| CB |
HB |
1.101 |
1.090 |
| CD1 |
CG2 |
1.528 |
1.530 |
| CD1 |
HD11 |
1.100 |
1.089 |
| CD1 |
HD12 |
1.100 |
1.091 |
| CD1 |
HD13 |
1.100 |
1.090 |
| CG2 |
HG21 |
1.100 |
1.090 |
| CG2 |
HG22 |
1.100 |
1.091 |
| OG1 |
HOG1 |
0.950 |
0.967 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for VAH
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
C |
OXT |
116.4 |
120.0 |
| O |
C |
OXT |
126.3 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| H |
N |
H2 |
109.5 |
111.0 |
| CB |
CA |
HA |
109.1 |
109.5 |
| OG1 |
CB |
HB |
110.3 |
109.5 |
| CG2 |
CB |
HB |
107.9 |
109.5 |
| CB |
CG2 |
CD1 |
110.5 |
109.5 |
| CB |
CG2 |
HG21 |
109.1 |
109.5 |
| CB |
CG2 |
HG22 |
109.1 |
109.5 |
| CG2 |
CD1 |
HD11 |
109.5 |
109.5 |
| CG2 |
CD1 |
HD12 |
109.5 |
109.5 |
| CG2 |
CD1 |
HD13 |
109.5 |
109.5 |
| CD1 |
CG2 |
HG21 |
109.1 |
109.5 |
| CD1 |
CG2 |
HG22 |
109.1 |
109.5 |
| HD11 |
CD1 |
HD12 |
109.5 |
109.4 |
| HD11 |
CD1 |
HD13 |
109.5 |
109.5 |
| HD12 |
CD1 |
HD13 |
109.5 |
109.5 |
| HG21 |
CG2 |
HG22 |
109.8 |
109.4 |
Torsion Angles for VAH
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
CA |
OXT |
179.6 |
179.8 |
| CA |
C |
OXT |
HXT |
179.6 |
179.7 |
| CA |
C |
O |
OXT |
180.4 |
180.2 |
| O |
C |
OXT |
HXT |
0.0 |
360.0 |
| N |
CA |
C |
OXT |
357.3 |
160.0 |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| CA |
N |
H2 |
H |
240.0 |
236.1 |
| CB |
CA |
C |
OXT |
117.5 |
280.0 |
| CB |
CA |
N |
H |
59.7 |
176.0 |
| CB |
CA |
N |
H2 |
179.7 |
300.0 |
| HA |
CA |
C |
OXT |
237.3 |
40.0 |
| HA |
CA |
N |
H |
299.9 |
56.0 |
| HA |
CA |
N |
H2 |
60.0 |
180.0 |
| OG1 |
CB |
CA |
HA |
303.0 |
184.9 |
| CG2 |
CB |
OG1 |
HB |
241.4 |
240.0 |
| OG1 |
CB |
CG2 |
HG21 |
179.1 |
185.1 |
| OG1 |
CB |
CG2 |
HG22 |
299.1 |
305.0 |
| CG2 |
CB |
CA |
HA |
181.6 |
65.0 |
| OG1 |
CB |
CG2 |
HB |
120.1 |
120.0 |
| CB |
CG2 |
CD1 |
HD11 |
180.0 |
300.0 |
| CB |
CG2 |
CD1 |
HD12 |
300.0 |
60.0 |
| CB |
CG2 |
CD1 |
HD13 |
60.0 |
179.9 |
| CD1 |
CG2 |
CB |
HG21 |
240.0 |
240.0 |
| CD1 |
CG2 |
CB |
HG22 |
120.0 |
120.0 |
| HG21 |
CG2 |
CB |
HG22 |
240.0 |
240.0 |
| HB |
CB |
CA |
HA |
63.1 |
305.0 |
| HB |
CB |
CG2 |
CD1 |
299.1 |
305.0 |
| HB |
CB |
CG2 |
HG21 |
59.1 |
65.1 |
| HB |
CB |
CG2 |
HG22 |
179.1 |
185.0 |
| CD1 |
CG2 |
CB |
HB |
299.1 |
305.0 |
| CB |
CG2 |
CD1 |
HG21 |
120.0 |
120.0 |
| CB |
CG2 |
CD1 |
HG22 |
240.0 |
240.0 |
| HD11 |
CD1 |
CG2 |
HD12 |
240.0 |
240.1 |
| HD11 |
CD1 |
CG2 |
HD13 |
120.0 |
120.1 |
| HD12 |
CD1 |
CG2 |
HD13 |
240.0 |
240.0 |
| HG21 |
CG2 |
CD1 |
HG22 |
120.0 |
120.0 |
| CG2 |
CD1 |
HD11 |
HD12 |
120.0 |
119.9 |
| CG2 |
CD1 |
HD11 |
HD13 |
240.0 |
239.9 |
| HD11 |
CD1 |
CG2 |
HG21 |
60.0 |
180.0 |
| HD11 |
CD1 |
CG2 |
HG22 |
300.0 |
60.1 |
| HD12 |
CD1 |
HD11 |
HD13 |
120.0 |
120.0 |
| CG2 |
CD1 |
HD12 |
HD11 |
240.0 |
240.1 |
| CG2 |
CD1 |
HD12 |
HD13 |
120.0 |
120.0 |
| HD12 |
CD1 |
CG2 |
HG21 |
180.0 |
300.0 |
| HD12 |
CD1 |
CG2 |
HG22 |
60.0 |
180.0 |
| HD11 |
CD1 |
HD12 |
HD13 |
240.0 |
240.0 |
| CG2 |
CD1 |
HD13 |
HD11 |
120.0 |
120.0 |
| CG2 |
CD1 |
HD13 |
HD12 |
240.0 |
240.0 |
| HD13 |
CD1 |
CG2 |
HG21 |
300.0 |
59.9 |
| HD13 |
CD1 |
CG2 |
HG22 |
180.0 |
300.0 |
| HD11 |
CD1 |
HD13 |
HD12 |
120.0 |
120.0 |
| HG21 |
CG2 |
CB |
HB |
59.1 |
65.1 |
| CB |
CG2 |
HG21 |
CD1 |
239.1 |
240.0 |
| CB |
CG2 |
HG21 |
HG22 |
119.5 |
120.0 |
| HG21 |
CG2 |
CD1 |
HD11 |
60.0 |
180.0 |
| HG21 |
CG2 |
CD1 |
HD12 |
180.0 |
300.0 |
| HG21 |
CG2 |
CD1 |
HD13 |
300.0 |
59.9 |
| CD1 |
CG2 |
HG21 |
HG22 |
240.4 |
240.0 |
| HG22 |
CG2 |
CB |
HB |
179.1 |
185.0 |
| CB |
CG2 |
HG22 |
CD1 |
120.9 |
120.0 |
| CB |
CG2 |
HG22 |
HG21 |
240.4 |
240.0 |
| HG22 |
CG2 |
CD1 |
HD11 |
300.0 |
60.1 |
| HG22 |
CG2 |
CD1 |
HD12 |
60.0 |
180.0 |
| HG22 |
CG2 |
CD1 |
HD13 |
180.0 |
300.0 |
| CD1 |
CG2 |
HG22 |
HG21 |
119.6 |
120.0 |
| HOG1 |
OG1 |
CB |
HB |
208.6 |
180.0 |