Atom Nomenclature for V6F

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for V6F

Atom Name (V3) Atom Name (V2)
O01 O01
C02 C02
C03 C03
C04 C04
C05 C05
N06 N06
C07 C07
O08 O08
N09 N09
C10 C10
C11 C11
O12 O12
C13 C13
H01 H01
H02 H02
H031 H031
H032 H032
H131 H131
H132 H132
H04 H04
H06 H06
H071 H071
H072 H072
H073 H073
H111 H111
H112 H112
H113 H113