PDB Chemical Component V38

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for V38

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N	C10	1.464	1.487
N	C11	1.477	1.487
N	C15	1.469	1.469
N	C23	1.466	1.470
C1	O1	1.463	1.347
C1	C2	1.503	1.477
C1	O2	1.232	1.215
O1	C8	1.422	1.452
C2	C3	1.401	1.396
C2	C7	1.408	1.397
C3	C4	1.401	1.379
O3	C16	1.426	1.430
C4	C5	1.403	1.383
C5	C6	1.395	1.383
C6	C7	1.400	1.380
C8	C9	1.534	1.531
C8	C12	1.532	1.531
C9	C10	1.528	1.538
C10	C14	1.523	1.546
C11	C12	1.527	1.537
C11	C13	1.525	1.546
C13	C14	1.521	1.543
C15	C16	1.514	1.530
C16	C17	1.468	1.507
C17	C18	1.397	1.383
C17	C22	1.400	1.383
C18	C19	1.392	1.382
C19	C20	1.409	1.383
C20	C21	1.396	1.382
C21	C22	1.396	1.382
C7	H7	1.080	1.080
C3	H3	1.080	1.080
C6	H6	1.080	1.080
C5	H5	1.080	1.081
C4	H4	1.080	1.080
C8	H8	1.100	1.090
C12	H121	1.100	1.090
C12	H122	1.100	1.090
C9	H91C	1.100	1.090
C9	H92C	1.100	1.090
C11	H11	1.100	1.089
C13	H131	1.100	1.089
C13	H132	1.100	1.090
C14	H141	1.100	1.090
C14	H142	1.100	1.090
C10	H10	1.100	1.090
C23	H231	1.100	1.090
C23	H232	1.100	1.090
C23	H233	1.100	1.089
C15	H151	1.100	1.090
C15	H152	1.100	1.090
C16	H16	1.100	1.090
O3	HA	0.950	0.967
C22	H22	1.080	1.080
C18	H18	1.080	1.079
C21	H21	1.079	1.081
C20	H20	1.080	1.080
C19	H19	1.080	1.080

Bond Angles for V38

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N	C10	H10	112.3	112.3
N	C11	H11	110.7	112.8
C23	N	C15	107.3	110.7
N	C15	C16	108.4	109.5
N	C15	H151	109.9	109.5
N	C15	H152	110.1	109.4
N	C23	H231	109.5	109.4
N	C23	H232	109.5	109.5
N	C23	H233	109.5	109.5
C2	C1	O1	115.1	120.1
C1	O1	C8	117.7	117.1
C1	C2	C3	121.0	120.2
C1	C2	C7	119.1	120.1
O1	C8	C9	107.2	109.4
O1	C8	C12	112.7	109.4
O1	C8	H8	110.7	109.4
C7	C2	C3	119.8	119.7
C2	C3	C4	119.2	119.8
C2	C3	H3	120.4	120.1
C2	C7	H7	119.6	120.1
C3	C4	H4	119.6	119.9
O3	C16	C17	109.5	109.5
O3	C16	H16	110.0	109.4
C4	C5	H5	119.9	119.8
C5	C6	H6	120.4	120.0
C6	C7	H7	119.6	120.1
C12	C8	C9	114.3	109.8
C8	C9	C10	115.8	108.9
C9	C8	H8	109.0	109.4
C8	C9	H91C	107.4	109.6
C8	C9	H92C	106.0	109.6
C12	C8	H8	103.0	109.4
C8	C12	H121	108.3	109.5
C8	C12	H122	107.4	109.6
C9	C10	H10	110.5	112.6
C10	C14	H141	111.2	110.4
C10	C14	H142	112.3	110.5
C11	C12	H121	108.2	109.6
C11	C12	H122	107.4	109.7
C11	C13	C14	105.3	104.8
C13	C11	H11	115.2	112.2
C11	C13	H131	110.9	110.4
C11	C13	H132	111.8	110.3
C14	C13	H131	110.9	110.4
C14	C13	H132	111.8	110.4
C13	C14	H141	111.2	110.3
C13	C14	H142	112.4	110.4
C15	C16	C17	109.3	109.5
C16	C15	H151	109.8	109.5
C16	C15	H152	110.1	109.5
C15	C16	H16	110.2	109.4
C16	C17	C18	119.6	120.0
C16	C17	C22	118.9	120.0
C17	C16	H16	109.3	109.5
C22	C17	C18	121.5	120.0
C17	C18	C19	118.1	120.0
C17	C18	H18	121.0	120.0
C17	C22	H22	119.8	120.0
C18	C19	H19	119.7	120.0
C19	C20	H20	119.5	120.0
C20	C21	H21	120.8	119.9
C21	C22	H22	119.8	120.0
H121	C12	H122	112.5	109.6
H91C	C9	H92C	114.6	109.7
H131	C13	H132	106.3	110.5
H141	C14	H142	105.6	110.3
H231	C23	H232	109.5	109.5
H231	C23	H233	109.5	109.5
H232	C23	H233	109.5	109.5
H151	C15	H152	108.6	109.4

Torsion Angles for V38

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C10	N	C11	H11	164.9	163.5
C9	C10	N	H10	237.7	235.9
N	C10	C14	H141	146.8	266.3
N	C10	C14	H142	264.9	144.0
N	C11	C12	H121	290.9	304.3
N	C11	C12	H122	169.3	184.0
C13	C11	N	H11	235.4	238.1
N	C11	C13	H131	96.8	93.6
N	C11	C13	H132	215.2	216.0
C15	N	C10	H10	70.3	78.2
C15	N	C11	H11	286.6	282.0
C15	N	C23	H231	186.7	297.0
C15	N	C23	H232	306.7	57.0
C15	N	C23	H233	66.7	177.0
N	C15	C16	C17	138.6	180.0
C16	C15	N	H151	240.0	240.0
C16	C15	N	H152	120.4	120.0
N	C15	C16	H16	18.5	60.0
H151	C15	N	H152	240.4	240.1
C23	N	C10	H10	311.6	315.2
C23	N	C11	H11	48.1	45.1
C23	N	C15	C16	294.3	307.4
C23	N	C15	H151	54.3	67.4
C23	N	C15	H152	173.9	187.4
H231	C23	N	H232	240.0	240.1
H231	C23	N	H233	120.0	120.0
H232	C23	N	H233	240.0	240.0
O1	C1	C2	C3	196.5	180.0
O1	C1	C2	C7	11.9	0.2
C1	O1	C8	C9	186.3	210.0
C1	O1	C8	C12	59.7	89.7
C1	O1	C8	H8	305.0	329.9
C2	C1	O1	C8	187.2	180.0
C7	C2	C1	C3	175.4	180.2
C1	C2	C3	C4	177.4	179.7
C1	C2	C3	H3	357.4	360.0
C1	C2	C7	H7	2.9	359.9
C12	C8	O1	C9	233.4	239.7
O1	C8	C9	C10	262.4	293.9
C9	C8	O1	H8	241.3	240.1
O1	C8	C9	H91C	22.4	53.7
O1	C8	C9	H92C	145.3	174.1
C12	C8	O1	H8	114.7	119.8
O1	C8	C12	H121	215.7	185.9
O1	C8	C12	H122	337.4	306.1
C3	C2	C1	O1	196.5	180.0
C1	C2	C3	C7	175.3	180.2
C3	C2	C7	H7	178.3	180.2
C2	C3	C4	H4	178.4	180.3
C7	C2	C1	O1	11.9	0.2
C1	C2	C7	C3	184.6	179.8
C7	C2	C3	C4	2.1	359.5
C7	C2	C3	H3	182.0	179.7
C6	C7	C2	H7	180.0	180.1
C2	C3	C4	H3	180.0	180.3
C3	C4	C5	H5	180.8	179.8
C15	C16	O3	C17	240.8	240.0
O3	C16	C15	H151	137.9	180.0
O3	C16	C15	H152	18.4	60.0
C15	C16	O3	H16	120.7	119.9
O3	C16	C17	C18	301.6	145.0
O3	C16	C17	C22	121.0	325.3
C17	C16	O3	H16	239.9	240.0
C2	C3	C4	C5	358.4	0.5
C4	C5	C6	H6	179.6	180.0
C5	C6	C7	H7	180.8	180.1
C6	C7	C2	C3	358.3	0.3
C2	C7	C6	H7	180.0	179.9
O1	C8	C9	C12	234.4	239.9
O1	C8	C9	H8	119.8	119.9
C12	C8	C9	H8	245.4	240.0
C9	C8	C12	H121	93.1	65.8
C9	C8	C12	H122	214.7	186.0
C8	C9	C10	H10	185.0	172.0
H91C	C9	C8	H92C	237.1	239.6
O1	C8	C12	C9	122.7	120.1
O1	C8	C12	H8	240.7	240.2
C12	C8	C9	C10	28.0	54.0
C9	C8	C12	H8	118.0	120.1
C12	C8	C9	H91C	148.0	173.8
C12	C8	C9	H92C	271.0	294.2
C11	C12	C8	H121	240.0	240.2
C11	C12	C8	H122	118.4	120.0
H121	C12	C8	H122	238.3	239.8
N	C10	C9	H10	123.4	124.0
C10	C9	C8	H8	142.6	174.0
C8	C9	C10	H91C	120.0	119.8
C8	C9	C10	H92C	242.9	240.2
C9	C10	C14	H141	31.9	152.6
C9	C10	C14	H142	150.0	30.3
C8	C9	C10	C14	60.9	47.6
C10	C14	C13	H131	238.0	241.2
C10	C14	C13	H132	119.6	118.8
C13	C14	C10	H141	240.0	118.8
C13	C14	C10	H142	121.9	241.1
H141	C14	C10	H142	241.9	122.3
C11	C12	C8	C9	333.1	306.0
C11	C12	C8	H8	215.1	185.9
C8	C12	C11	H121	120.0	119.8
C8	C12	C11	H122	241.6	240.1
H121	C12	C11	H122	121.7	120.3
N	C11	C13	H11	121.7	122.3
C13	C11	C12	H121	178.0	192.6
C13	C11	C12	H122	56.4	72.3
C14	C13	C11	H131	240.0	241.2
C14	C13	C11	H132	121.6	118.8
C11	C13	C14	H141	238.0	118.9
C11	C13	C14	H142	119.9	241.1
H131	C13	C11	H132	241.5	237.6
C10	C14	C13	H141	120.0	241.2
C10	C14	C13	H142	238.1	119.0
C14	C13	C11	H11	215.1	212.5
C11	C13	C14	H131	120.0	118.8
C11	C13	C14	H132	238.4	241.2
H131	C13	C14	H132	118.4	122.4
H141	C14	C13	H142	118.1	237.8
N	C15	C16	H151	120.0	120.1
N	C15	C16	H152	239.6	240.0
O3	C16	C15	C17	119.3	120.0
O3	C16	C15	H16	239.5	240.1
C15	C16	C17	C18	60.4	265.0
C15	C16	C17	C22	239.8	85.3
C17	C16	C15	H16	120.1	120.1
H151	C15	C16	H152	119.6	120.0
O3	C16	C17	H16	120.5	120.0
C17	C16	C15	H151	18.6	60.0
C17	C16	C15	H152	259.0	300.0
C15	C16	C17	H16	239.3	240.0
C22	C17	C16	C18	179.4	180.2
C16	C17	C18	C19	179.9	179.7
C16	C17	C18	H18	359.9	359.9
C16	C17	C22	H22	0.1	0.0
C16	C17	C18	C22	179.4	180.2
C18	C17	C16	H16	181.1	25.1
C18	C17	C22	H22	179.5	180.2
C17	C18	C19	H19	179.7	180.2
C16	C17	C22	C18	180.6	179.8
C22	C17	C16	H16	0.5	205.3
C22	C17	C18	C19	0.5	359.5
C22	C17	C18	H18	180.5	179.7
C21	C22	C17	H22	180.0	180.0
C17	C18	C19	H18	180.0	180.2
C18	C19	C20	H20	180.2	179.7
C17	C18	C19	C20	359.7	0.5
C19	C20	C21	H21	179.8	180.0
C20	C21	C22	H22	180.3	180.0
C21	C22	C17	C18	359.5	0.3
C17	C22	C21	H22	180.0	180.0
H7	C7	C2	C3	178.3	180.2
C2	C3	H3	C4	180.0	179.7
H3	C3	C4	H4	358.4	0.0
H6	C6	C7	H7	0.8	0.1
H5	C5	C6	H6	359.6	360.0
H4	C4	C5	H5	0.8	360.0
O1	C8	H8	C9	242.4	240.1
O1	C8	H8	C12	120.7	119.8
C12	C8	H8	C9	121.7	120.3
H8	C8	C9	C10	142.6	174.0
H8	C8	C9	H91C	262.6	293.8
H8	C8	C9	H92C	25.5	54.2
H8	C8	C12	H121	335.0	305.7
H8	C8	C12	H122	96.7	66.0
H121	C12	C8	C9	93.1	65.8
H121	C12	C8	H8	335.0	305.7
C8	C12	H121	H122	118.5	120.3
C11	C12	H121	H122	241.5	239.6
H122	C12	C8	C9	214.7	186.0
H122	C12	C8	H8	96.7	66.0
C8	C12	H122	H121	241.0	239.8
C11	C12	H122	H121	118.9	120.3
C8	C9	H91C	C10	234.8	240.6
H91C	C9	C8	H8	262.6	293.8
C8	C9	H91C	H92C	117.4	120.3
H91C	C9	C10	H10	64.9	52.1
C8	C9	H92C	C10	123.5	119.4
H92C	C9	C8	H8	25.5	54.2
C8	C9	H92C	H91C	241.7	239.7
H92C	C9	C10	H10	302.1	291.8
H11	C11	C12	H121	53.3	68.6
H11	C11	C12	H122	291.6	308.3
H11	C11	C13	C14	215.1	212.5
H11	C11	C13	H131	335.1	331.3
H11	C11	C13	H132	93.5	93.7
C11	C13	H131	C14	243.4	244.6
H131	C13	C11	H11	335.1	331.3
C11	C13	H131	H132	121.7	122.3
C14	C13	H131	H132	238.3	237.7
H131	C13	C14	H141	118.0	0.0
H131	C13	C14	H142	359.9	122.2
C11	C13	H132	C14	117.8	115.4
H132	C13	C11	H11	93.5	93.7
C11	C13	H132	H131	238.8	237.7
C14	C13	H132	H131	121.1	122.3
H132	C13	C14	H141	359.6	237.7
H132	C13	C14	H142	241.5	359.8
C10	C14	H141	H142	122.1	237.6
H141	C14	C13	H131	118.0	0.0
H141	C14	C13	H132	359.6	237.7
C13	C14	H141	H142	237.9	122.2
C10	C14	H142	H141	238.6	122.3
H142	C14	C13	H131	359.9	122.2
H142	C14	C13	H132	241.5	359.8
C13	C14	H142	H141	121.4	237.8
H10	C10	C14	H141	269.8	28.1
H10	C10	C14	H142	27.9	265.8
H231	C23	N	C15	186.7	297.0
N	C23	H231	H232	120.0	120.0
N	C23	H231	H233	240.0	240.0
H232	C23	H231	H233	120.0	120.0
H232	C23	N	C15	306.7	57.0
N	C23	H232	H231	240.0	240.1
N	C23	H232	H233	120.0	120.0
H231	C23	H232	H233	240.0	239.9
H233	C23	N	C15	66.7	177.0
N	C23	H233	H231	120.0	120.0
N	C23	H233	H232	240.0	240.0
H231	C23	H233	H232	120.0	120.0
N	C15	H151	C16	240.9	239.9
N	C15	H151	H152	120.5	120.0
H151	C15	C16	C17	18.6	60.0
C16	C15	H151	H152	239.5	240.0
H151	C15	C16	H16	258.5	299.9
N	C15	H152	C16	119.4	120.0
N	C15	H152	H151	239.7	240.0
H152	C15	C16	C17	259.0	300.0
C16	C15	H152	H151	120.3	120.0
H152	C15	C16	H16	138.9	180.0
O3	C16	H16	C17	239.8	240.0
C15	C16	H16	C17	120.1	120.0
H16	C16	C15	H151	258.5	299.9
H16	C16	C15	H152	138.9	180.0
H16	C16	C17	C18	181.1	25.1
H16	C16	C17	C22	0.5	205.3
HA	O3	C16	C17	127.4	60.0
HA	O3	C16	H16	247.5	180.0
H22	C22	C17	C18	179.5	180.2
C17	C18	H18	C19	180.0	179.8
H18	C18	C19	H19	359.6	360.0
H21	C21	C22	H22	0.3	0.1
H20	C20	C21	H21	359.8	0.0
H19	C19	C20	H20	0.2	360.0