PDB Chemical Component V37
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for V37
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N |
C10 |
1.479 |
1.487 |
N |
C11 |
1.469 |
1.487 |
N |
C15 |
1.467 |
1.469 |
C1 |
O1 |
1.449 |
1.347 |
C1 |
C2 |
1.499 |
1.477 |
C1 |
O2 |
1.222 |
1.215 |
O1 |
C8 |
1.421 |
1.452 |
C2 |
C3 |
1.400 |
1.397 |
C2 |
C7 |
1.392 |
1.396 |
C3 |
C4 |
1.403 |
1.380 |
C4 |
C5 |
1.391 |
1.383 |
C5 |
C6 |
1.402 |
1.384 |
C6 |
C7 |
1.392 |
1.380 |
C8 |
C9 |
1.531 |
1.532 |
C8 |
C12 |
1.536 |
1.531 |
C9 |
C10 |
1.527 |
1.538 |
C10 |
C14 |
1.524 |
1.546 |
C11 |
C12 |
1.531 |
1.537 |
C11 |
C13 |
1.531 |
1.546 |
C13 |
C14 |
1.523 |
1.543 |
C15 |
C16 |
1.521 |
1.530 |
C16 |
C17 |
1.508 |
1.507 |
C17 |
C18 |
1.402 |
1.383 |
C17 |
C22 |
1.393 |
1.382 |
C18 |
C19 |
1.403 |
1.382 |
C19 |
C20 |
1.394 |
1.382 |
C20 |
C21 |
1.398 |
1.383 |
C21 |
C22 |
1.405 |
1.383 |
C7 |
H7 |
1.080 |
1.080 |
C3 |
H3 |
1.080 |
1.080 |
C6 |
H6 |
1.080 |
1.080 |
C5 |
H5 |
1.080 |
1.080 |
C4 |
H4 |
1.080 |
1.080 |
C8 |
H8 |
1.100 |
1.090 |
C12 |
H121 |
1.100 |
1.090 |
C12 |
H122 |
1.100 |
1.090 |
C9 |
H91C |
1.100 |
1.090 |
C9 |
H92C |
1.100 |
1.090 |
C11 |
H11 |
1.100 |
1.090 |
C13 |
H131 |
1.100 |
1.090 |
C13 |
H132 |
1.100 |
1.090 |
C14 |
H141 |
1.100 |
1.090 |
C14 |
H142 |
1.100 |
1.090 |
C10 |
H10 |
1.100 |
1.089 |
C15 |
H151 |
1.100 |
1.090 |
C15 |
H152 |
1.100 |
1.091 |
C16 |
H161 |
1.100 |
1.090 |
C16 |
H162 |
1.100 |
1.091 |
C22 |
H22 |
1.080 |
1.080 |
C18 |
H18 |
1.080 |
1.080 |
C21 |
H21 |
1.080 |
1.079 |
C20 |
H20 |
1.080 |
1.079 |
C19 |
H19 |
1.080 |
1.080 |
Bond Angles for V37
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N |
C10 |
H10 |
113.8 |
112.3 |
N |
C11 |
H11 |
115.3 |
112.7 |
N |
C15 |
C16 |
110.1 |
109.5 |
N |
C15 |
H151 |
109.3 |
109.5 |
N |
C15 |
H152 |
109.1 |
109.5 |
C2 |
C1 |
O1 |
118.2 |
120.0 |
C1 |
O1 |
C8 |
114.7 |
117.0 |
C1 |
C2 |
C3 |
120.6 |
120.1 |
C1 |
C2 |
C7 |
119.7 |
120.2 |
O1 |
C8 |
C9 |
105.9 |
109.4 |
O1 |
C8 |
C12 |
108.6 |
109.4 |
O1 |
C8 |
H8 |
114.1 |
109.4 |
C7 |
C2 |
C3 |
119.7 |
119.7 |
C2 |
C3 |
C4 |
120.9 |
119.8 |
C2 |
C3 |
H3 |
119.5 |
120.1 |
C2 |
C7 |
H7 |
120.5 |
120.1 |
C3 |
C4 |
H4 |
120.3 |
119.9 |
C4 |
C5 |
H5 |
120.4 |
119.9 |
C5 |
C6 |
H6 |
119.2 |
120.0 |
C6 |
C7 |
H7 |
120.5 |
120.1 |
C12 |
C8 |
C9 |
114.2 |
109.7 |
C8 |
C9 |
C10 |
113.5 |
108.9 |
C9 |
C8 |
H8 |
108.4 |
109.4 |
C8 |
C9 |
H91C |
108.2 |
109.6 |
C8 |
C9 |
H92C |
107.2 |
109.5 |
C12 |
C8 |
H8 |
105.8 |
109.4 |
C8 |
C12 |
H121 |
108.2 |
109.6 |
C8 |
C12 |
H122 |
107.2 |
109.6 |
C9 |
C10 |
H10 |
111.0 |
112.6 |
C10 |
C14 |
H141 |
111.2 |
110.3 |
C10 |
C14 |
H142 |
112.3 |
110.5 |
C11 |
C12 |
H121 |
108.1 |
109.5 |
C11 |
C12 |
H122 |
107.3 |
109.7 |
C11 |
C13 |
C14 |
105.7 |
104.8 |
C13 |
C11 |
H11 |
110.8 |
112.2 |
C11 |
C13 |
H131 |
110.8 |
110.4 |
C11 |
C13 |
H132 |
111.6 |
110.4 |
C14 |
C13 |
H131 |
110.8 |
110.4 |
C14 |
C13 |
H132 |
111.6 |
110.3 |
C13 |
C14 |
H141 |
111.2 |
110.4 |
C13 |
C14 |
H142 |
112.3 |
110.4 |
C15 |
C16 |
C17 |
105.8 |
109.5 |
C16 |
C15 |
H151 |
109.3 |
109.5 |
C16 |
C15 |
H152 |
109.1 |
109.5 |
C15 |
C16 |
H161 |
110.7 |
109.5 |
C15 |
C16 |
H162 |
111.5 |
109.5 |
C16 |
C17 |
C18 |
120.1 |
120.0 |
C16 |
C17 |
C22 |
120.5 |
120.0 |
C17 |
C16 |
H161 |
110.7 |
109.5 |
C17 |
C16 |
H162 |
111.5 |
109.5 |
C22 |
C17 |
C18 |
119.3 |
120.0 |
C17 |
C18 |
C19 |
120.6 |
120.0 |
C17 |
C18 |
H18 |
119.7 |
120.0 |
C17 |
C22 |
H22 |
120.2 |
120.0 |
C18 |
C19 |
H19 |
119.8 |
120.0 |
C19 |
C20 |
H20 |
120.8 |
120.0 |
C20 |
C21 |
H21 |
119.2 |
120.0 |
C21 |
C22 |
H22 |
120.2 |
120.0 |
H121 |
C12 |
H122 |
112.7 |
109.5 |
H91C |
C9 |
H92C |
112.6 |
109.7 |
H131 |
C13 |
H132 |
106.6 |
110.4 |
H141 |
C14 |
H142 |
105.6 |
110.3 |
H151 |
C15 |
H152 |
109.9 |
109.4 |
H161 |
C16 |
H162 |
106.7 |
109.4 |
Torsion Angles for V37
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C10 |
N |
C11 |
H11 |
161.1 |
163.5 |
C9 |
C10 |
N |
H10 |
237.9 |
235.8 |
N |
C10 |
C14 |
H141 |
141.5 |
266.3 |
N |
C10 |
C14 |
H142 |
259.6 |
144.1 |
N |
C11 |
C12 |
H121 |
294.4 |
304.2 |
N |
C11 |
C12 |
H122 |
172.7 |
184.0 |
C13 |
C11 |
N |
H11 |
238.1 |
238.1 |
N |
C11 |
C13 |
H131 |
94.3 |
93.6 |
N |
C11 |
C13 |
H132 |
212.9 |
216.0 |
C15 |
N |
C10 |
H10 |
316.5 |
315.9 |
C15 |
N |
C11 |
H11 |
42.9 |
44.4 |
N |
C15 |
C16 |
C17 |
170.5 |
180.0 |
C16 |
C15 |
N |
H151 |
240.0 |
240.0 |
C16 |
C15 |
N |
H152 |
119.7 |
120.0 |
N |
C15 |
C16 |
H161 |
290.4 |
300.0 |
N |
C15 |
C16 |
H162 |
49.1 |
59.9 |
H151 |
C15 |
N |
H152 |
239.8 |
240.1 |
O1 |
C1 |
C2 |
C3 |
188.4 |
180.0 |
O1 |
C1 |
C2 |
C7 |
9.0 |
0.3 |
C1 |
O1 |
C8 |
C9 |
259.7 |
210.0 |
C1 |
O1 |
C8 |
C12 |
136.6 |
89.7 |
C1 |
O1 |
C8 |
H8 |
18.9 |
329.9 |
C2 |
C1 |
O1 |
C8 |
195.2 |
180.0 |
C7 |
C2 |
C1 |
C3 |
180.7 |
180.3 |
C1 |
C2 |
C3 |
C4 |
179.0 |
179.8 |
C1 |
C2 |
C3 |
H3 |
359.0 |
360.0 |
C1 |
C2 |
C7 |
H7 |
0.6 |
359.9 |
C12 |
C8 |
O1 |
C9 |
236.9 |
239.7 |
O1 |
C8 |
C9 |
C10 |
273.3 |
293.9 |
C9 |
C8 |
O1 |
H8 |
240.8 |
240.1 |
O1 |
C8 |
C9 |
H91C |
33.2 |
53.8 |
O1 |
C8 |
C9 |
H92C |
155.0 |
174.1 |
C12 |
C8 |
O1 |
H8 |
117.7 |
119.9 |
O1 |
C8 |
C12 |
H121 |
205.3 |
185.9 |
O1 |
C8 |
C12 |
H122 |
327.1 |
306.1 |
C3 |
C2 |
C1 |
O1 |
188.4 |
180.0 |
C1 |
C2 |
C3 |
C7 |
180.7 |
180.3 |
C3 |
C2 |
C7 |
H7 |
181.2 |
180.2 |
C2 |
C3 |
C4 |
H4 |
180.3 |
180.3 |
C7 |
C2 |
C1 |
O1 |
9.0 |
0.3 |
C1 |
C2 |
C7 |
C3 |
179.3 |
179.7 |
C7 |
C2 |
C3 |
C4 |
358.4 |
359.4 |
C7 |
C2 |
C3 |
H3 |
178.4 |
179.7 |
C6 |
C7 |
C2 |
H7 |
180.0 |
180.1 |
C2 |
C3 |
C4 |
H3 |
180.0 |
180.2 |
C3 |
C4 |
C5 |
H5 |
181.4 |
179.7 |
C2 |
C3 |
C4 |
C5 |
0.3 |
0.5 |
C4 |
C5 |
C6 |
H6 |
178.2 |
180.0 |
C5 |
C6 |
C7 |
H7 |
180.5 |
180.1 |
C6 |
C7 |
C2 |
C3 |
1.3 |
0.3 |
C2 |
C7 |
C6 |
H7 |
180.0 |
179.9 |
O1 |
C8 |
C9 |
C12 |
240.6 |
239.9 |
O1 |
C8 |
C9 |
H8 |
122.9 |
119.8 |
C12 |
C8 |
C9 |
H8 |
242.3 |
239.9 |
C9 |
C8 |
C12 |
H121 |
87.3 |
65.8 |
C9 |
C8 |
C12 |
H122 |
209.1 |
186.0 |
C8 |
C9 |
C10 |
H10 |
181.7 |
172.0 |
H91C |
C9 |
C8 |
H92C |
238.2 |
239.6 |
O1 |
C8 |
C12 |
C9 |
118.0 |
120.1 |
O1 |
C8 |
C12 |
H8 |
237.1 |
240.2 |
C12 |
C8 |
C9 |
C10 |
32.7 |
54.0 |
C9 |
C8 |
C12 |
H8 |
119.2 |
120.1 |
C12 |
C8 |
C9 |
H91C |
152.7 |
173.8 |
C12 |
C8 |
C9 |
H92C |
274.4 |
294.2 |
C11 |
C12 |
C8 |
H121 |
240.0 |
240.2 |
C11 |
C12 |
C8 |
H122 |
118.2 |
120.0 |
H121 |
C12 |
C8 |
H122 |
238.2 |
239.8 |
N |
C10 |
C9 |
H10 |
124.0 |
124.0 |
C10 |
C9 |
C8 |
H8 |
150.4 |
174.1 |
C8 |
C9 |
C10 |
H91C |
120.0 |
119.9 |
C8 |
C9 |
C10 |
H92C |
241.8 |
240.2 |
C9 |
C10 |
C14 |
H141 |
27.9 |
152.6 |
C9 |
C10 |
C14 |
H142 |
146.1 |
30.4 |
C8 |
C9 |
C10 |
C14 |
59.2 |
47.6 |
C10 |
C14 |
C13 |
H131 |
242.5 |
241.2 |
C10 |
C14 |
C13 |
H132 |
124.0 |
118.9 |
C13 |
C14 |
C10 |
H141 |
240.0 |
118.8 |
C13 |
C14 |
C10 |
H142 |
121.9 |
241.0 |
H141 |
C14 |
C10 |
H142 |
241.9 |
122.2 |
C11 |
C12 |
C8 |
C9 |
327.3 |
306.0 |
C11 |
C12 |
C8 |
H8 |
208.2 |
185.9 |
C8 |
C12 |
C11 |
H121 |
120.0 |
119.8 |
C8 |
C12 |
C11 |
H122 |
241.8 |
240.1 |
H121 |
C12 |
C11 |
H122 |
121.8 |
120.2 |
N |
C11 |
C13 |
H11 |
124.8 |
122.3 |
C13 |
C11 |
C12 |
H121 |
182.0 |
192.5 |
C13 |
C11 |
C12 |
H122 |
60.2 |
72.3 |
C14 |
C13 |
C11 |
H131 |
240.0 |
241.1 |
C14 |
C13 |
C11 |
H132 |
121.4 |
118.8 |
C11 |
C13 |
C14 |
H141 |
242.5 |
118.9 |
C11 |
C13 |
C14 |
H142 |
124.4 |
241.0 |
H131 |
C13 |
C11 |
H132 |
241.4 |
237.6 |
C10 |
C14 |
C13 |
H141 |
120.0 |
241.2 |
C10 |
C14 |
C13 |
H142 |
238.1 |
119.0 |
C14 |
C13 |
C11 |
H11 |
209.5 |
212.5 |
C11 |
C13 |
C14 |
H131 |
120.0 |
118.9 |
C11 |
C13 |
C14 |
H132 |
238.5 |
241.2 |
H131 |
C13 |
C14 |
H132 |
118.6 |
122.3 |
H141 |
C14 |
C13 |
H142 |
118.1 |
237.8 |
N |
C15 |
C16 |
H151 |
120.0 |
120.0 |
N |
C15 |
C16 |
H152 |
240.3 |
239.9 |
C15 |
C16 |
C17 |
C18 |
283.9 |
90.0 |
C15 |
C16 |
C17 |
C22 |
101.6 |
270.3 |
C17 |
C16 |
C15 |
H161 |
240.0 |
240.0 |
C17 |
C16 |
C15 |
H162 |
121.4 |
120.0 |
H151 |
C15 |
C16 |
H152 |
120.2 |
119.9 |
H161 |
C16 |
C15 |
H162 |
241.4 |
240.1 |
C17 |
C16 |
C15 |
H151 |
50.4 |
60.0 |
C17 |
C16 |
C15 |
H152 |
290.2 |
300.0 |
C15 |
C16 |
C17 |
H161 |
120.0 |
120.0 |
C15 |
C16 |
C17 |
H162 |
238.6 |
240.0 |
C22 |
C17 |
C16 |
C18 |
177.7 |
180.3 |
C16 |
C17 |
C18 |
C19 |
178.6 |
179.7 |
C16 |
C17 |
C18 |
H18 |
358.6 |
0.1 |
C16 |
C17 |
C22 |
H22 |
1.7 |
0.0 |
H161 |
C16 |
C17 |
H162 |
118.6 |
119.9 |
C16 |
C17 |
C18 |
C22 |
177.7 |
180.3 |
C18 |
C17 |
C16 |
H161 |
163.9 |
329.9 |
C18 |
C17 |
C16 |
H162 |
45.3 |
210.0 |
C18 |
C17 |
C22 |
H22 |
179.4 |
180.3 |
C17 |
C18 |
C19 |
H19 |
178.9 |
180.4 |
C16 |
C17 |
C22 |
C18 |
182.3 |
179.7 |
C22 |
C17 |
C16 |
H161 |
341.6 |
150.3 |
C22 |
C17 |
C16 |
H162 |
223.0 |
30.3 |
C22 |
C17 |
C18 |
C19 |
0.9 |
359.4 |
C22 |
C17 |
C18 |
H18 |
180.9 |
179.7 |
C21 |
C22 |
C17 |
H22 |
180.0 |
179.9 |
C17 |
C18 |
C19 |
H18 |
180.0 |
180.4 |
C18 |
C19 |
C20 |
H20 |
181.0 |
179.7 |
C17 |
C18 |
C19 |
C20 |
358.9 |
0.6 |
C19 |
C20 |
C21 |
H21 |
179.2 |
180.0 |
C20 |
C21 |
C22 |
H22 |
180.6 |
180.0 |
C21 |
C22 |
C17 |
C18 |
359.4 |
0.3 |
C17 |
C22 |
C21 |
H22 |
180.0 |
180.1 |
H7 |
C7 |
C2 |
C3 |
181.2 |
180.2 |
C2 |
C3 |
H3 |
C4 |
180.0 |
179.8 |
H3 |
C3 |
C4 |
H4 |
0.2 |
0.0 |
H6 |
C6 |
C7 |
H7 |
0.5 |
0.0 |
H5 |
C5 |
C6 |
H6 |
358.2 |
0.1 |
H4 |
C4 |
C5 |
H5 |
1.4 |
360.0 |
O1 |
C8 |
H8 |
C9 |
242.2 |
240.1 |
O1 |
C8 |
H8 |
C12 |
119.3 |
119.9 |
C12 |
C8 |
H8 |
C9 |
122.9 |
120.3 |
H8 |
C8 |
C9 |
C10 |
150.4 |
174.1 |
H8 |
C8 |
C9 |
H91C |
270.4 |
293.9 |
H8 |
C8 |
C9 |
H92C |
32.1 |
54.3 |
H8 |
C8 |
C12 |
H121 |
328.2 |
305.7 |
H8 |
C8 |
C12 |
H122 |
89.9 |
65.9 |
H121 |
C12 |
C8 |
C9 |
87.3 |
65.8 |
H121 |
C12 |
C8 |
H8 |
328.2 |
305.7 |
C8 |
C12 |
H121 |
H122 |
118.4 |
120.2 |
C11 |
C12 |
H121 |
H122 |
241.6 |
239.7 |
H122 |
C12 |
C8 |
C9 |
209.1 |
186.0 |
H122 |
C12 |
C8 |
H8 |
89.9 |
65.9 |
C8 |
C12 |
H122 |
H121 |
241.1 |
239.8 |
C11 |
C12 |
H122 |
H121 |
118.9 |
120.2 |
C8 |
C9 |
H91C |
C10 |
236.7 |
240.6 |
H91C |
C9 |
C8 |
H8 |
270.4 |
293.9 |
C8 |
C9 |
H91C |
H92C |
118.4 |
120.3 |
H91C |
C9 |
C10 |
H10 |
61.6 |
52.1 |
C8 |
C9 |
H92C |
C10 |
122.2 |
119.4 |
H92C |
C9 |
C8 |
H8 |
32.1 |
54.3 |
C8 |
C9 |
H92C |
H91C |
241.1 |
239.7 |
H92C |
C9 |
C10 |
H10 |
299.9 |
291.8 |
H11 |
C11 |
C12 |
H121 |
59.4 |
68.5 |
H11 |
C11 |
C12 |
H122 |
297.7 |
308.3 |
H11 |
C11 |
C13 |
C14 |
209.5 |
212.5 |
H11 |
C11 |
C13 |
H131 |
329.5 |
331.4 |
H11 |
C11 |
C13 |
H132 |
88.0 |
93.7 |
C11 |
C13 |
H131 |
C14 |
243.1 |
244.6 |
H131 |
C13 |
C11 |
H11 |
329.5 |
331.4 |
C11 |
C13 |
H131 |
H132 |
121.6 |
122.3 |
C14 |
C13 |
H131 |
H132 |
238.5 |
237.8 |
H131 |
C13 |
C14 |
H141 |
122.5 |
360.0 |
H131 |
C13 |
C14 |
H142 |
4.4 |
122.1 |
C11 |
C13 |
H132 |
C14 |
117.9 |
115.4 |
H132 |
C13 |
C11 |
H11 |
88.0 |
93.7 |
C11 |
C13 |
H132 |
H131 |
239.0 |
237.6 |
C14 |
C13 |
H132 |
H131 |
121.0 |
122.3 |
H132 |
C13 |
C14 |
H141 |
4.0 |
237.7 |
H132 |
C13 |
C14 |
H142 |
245.9 |
359.9 |
C10 |
C14 |
H141 |
H142 |
122.1 |
237.7 |
H141 |
C14 |
C13 |
H131 |
122.5 |
360.0 |
H141 |
C14 |
C13 |
H132 |
4.0 |
237.7 |
C13 |
C14 |
H141 |
H142 |
237.9 |
122.3 |
C10 |
C14 |
H142 |
H141 |
238.6 |
122.2 |
H142 |
C14 |
C13 |
H131 |
4.4 |
122.1 |
H142 |
C14 |
C13 |
H132 |
245.9 |
359.9 |
C13 |
C14 |
H142 |
H141 |
121.3 |
237.8 |
H10 |
C10 |
C14 |
H141 |
265.5 |
28.0 |
H10 |
C10 |
C14 |
H142 |
23.6 |
265.8 |
N |
C15 |
H151 |
C16 |
239.5 |
240.0 |
N |
C15 |
H151 |
H152 |
119.7 |
120.0 |
H151 |
C15 |
C16 |
C17 |
50.4 |
60.0 |
C16 |
C15 |
H151 |
H152 |
240.2 |
240.0 |
H151 |
C15 |
C16 |
H161 |
170.4 |
180.0 |
H151 |
C15 |
C16 |
H162 |
289.1 |
299.9 |
N |
C15 |
H152 |
C16 |
120.3 |
120.1 |
N |
C15 |
H152 |
H151 |
240.2 |
240.0 |
H152 |
C15 |
C16 |
C17 |
290.2 |
300.0 |
C16 |
C15 |
H152 |
H151 |
119.9 |
120.0 |
H152 |
C15 |
C16 |
H161 |
50.2 |
60.1 |
H152 |
C15 |
C16 |
H162 |
168.8 |
180.0 |
C15 |
C16 |
H161 |
C17 |
243.0 |
239.9 |
H161 |
C16 |
C15 |
H151 |
170.4 |
180.0 |
H161 |
C16 |
C15 |
H152 |
50.2 |
60.1 |
C15 |
C16 |
H161 |
H162 |
121.5 |
120.0 |
H161 |
C16 |
C17 |
C18 |
163.9 |
329.9 |
H161 |
C16 |
C17 |
C22 |
341.6 |
150.3 |
C17 |
C16 |
H161 |
H162 |
238.5 |
240.0 |
C15 |
C16 |
H162 |
C17 |
118.0 |
120.1 |
H162 |
C16 |
C15 |
H151 |
289.1 |
299.9 |
H162 |
C16 |
C15 |
H152 |
168.8 |
180.0 |
C15 |
C16 |
H162 |
H161 |
239.0 |
240.0 |
H162 |
C16 |
C17 |
C18 |
45.3 |
210.0 |
H162 |
C16 |
C17 |
C22 |
223.0 |
30.3 |
C17 |
C16 |
H162 |
H161 |
121.0 |
120.0 |
H22 |
C22 |
C17 |
C18 |
179.4 |
180.3 |
C17 |
C18 |
H18 |
C19 |
180.0 |
179.6 |
H18 |
C18 |
C19 |
H19 |
358.9 |
360.0 |
H21 |
C21 |
C22 |
H22 |
0.6 |
359.9 |
H20 |
C20 |
C21 |
H21 |
359.2 |
0.0 |
H19 |
C19 |
C20 |
H20 |
1.0 |
360.0 |