PDB Chemical Component V2Z
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for V2Z
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N10 |
C11 |
1.305 |
1.309 |
N10 |
C7 |
1.380 |
1.338 |
C11 |
C12 |
1.512 |
1.414 |
C11 |
C16 |
1.494 |
1.508 |
C12 |
O6 |
1.227 |
1.220 |
C12 |
N7 |
1.370 |
1.350 |
C14 |
C15 |
1.516 |
1.530 |
C15 |
C16 |
1.518 |
1.530 |
C7 |
C6 |
1.335 |
1.378 |
C7 |
C8 |
1.465 |
1.483 |
C6 |
N7 |
1.368 |
1.352 |
C8 |
C9 |
1.380 |
1.397 |
C8 |
C4 |
1.385 |
1.395 |
C9 |
C1 |
1.382 |
1.385 |
C4 |
N3 |
1.341 |
1.317 |
N3 |
C2 |
1.335 |
1.319 |
C2 |
C1 |
1.380 |
1.382 |
C16 |
H161 |
1.100 |
1.090 |
C16 |
H162 |
1.100 |
1.089 |
N7 |
H7 |
1.000 |
0.970 |
C14 |
H141 |
1.100 |
1.090 |
C14 |
H142 |
1.100 |
1.090 |
C14 |
H143 |
1.100 |
1.091 |
C15 |
H151 |
1.100 |
1.091 |
C15 |
H152 |
1.100 |
1.091 |
C6 |
H6 |
1.080 |
1.080 |
C9 |
H9 |
1.080 |
1.079 |
C4 |
H4 |
1.080 |
1.080 |
C1 |
H1 |
1.080 |
1.080 |
C2 |
H2 |
1.080 |
1.080 |
Bond Angles for V2Z
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C11 |
N10 |
C7 |
118.2 |
120.7 |
N10 |
C11 |
C12 |
123.1 |
120.1 |
N10 |
C11 |
C16 |
120.3 |
120.0 |
N10 |
C7 |
C6 |
122.3 |
120.6 |
N10 |
C7 |
C8 |
120.5 |
119.7 |
C12 |
C11 |
C16 |
116.7 |
120.0 |
C11 |
C12 |
O6 |
120.4 |
120.3 |
C11 |
C12 |
N7 |
113.4 |
119.4 |
C11 |
C16 |
C15 |
107.9 |
109.5 |
C11 |
C16 |
H161 |
109.9 |
109.5 |
C11 |
C16 |
H162 |
109.9 |
109.5 |
O6 |
C12 |
N7 |
126.2 |
120.3 |
C12 |
N7 |
C6 |
122.3 |
119.3 |
C12 |
N7 |
H7 |
118.9 |
120.3 |
C14 |
C15 |
C16 |
111.4 |
109.5 |
C15 |
C14 |
H141 |
109.5 |
109.5 |
C15 |
C14 |
H142 |
109.5 |
109.6 |
C15 |
C14 |
H143 |
109.5 |
109.5 |
C14 |
C15 |
H151 |
109.0 |
109.4 |
C14 |
C15 |
H152 |
109.0 |
109.5 |
C15 |
C16 |
H161 |
109.9 |
109.5 |
C15 |
C16 |
H162 |
109.9 |
109.5 |
C16 |
C15 |
H151 |
109.0 |
109.5 |
C16 |
C15 |
H152 |
109.0 |
109.5 |
C6 |
C7 |
C8 |
117.2 |
119.7 |
C7 |
C6 |
N7 |
120.8 |
119.9 |
C7 |
C6 |
H6 |
119.6 |
120.0 |
C7 |
C8 |
C9 |
120.8 |
120.6 |
C7 |
C8 |
C4 |
122.1 |
120.5 |
C6 |
N7 |
H7 |
118.9 |
120.3 |
N7 |
C6 |
H6 |
119.6 |
120.0 |
C9 |
C8 |
C4 |
117.1 |
118.9 |
C8 |
C9 |
C1 |
119.2 |
118.3 |
C8 |
C9 |
H9 |
120.4 |
120.8 |
C8 |
C4 |
N3 |
125.6 |
120.6 |
C8 |
C4 |
H4 |
117.2 |
119.7 |
C9 |
C1 |
C2 |
118.5 |
119.3 |
C1 |
C9 |
H9 |
120.4 |
120.8 |
C9 |
C1 |
H1 |
120.7 |
120.3 |
C4 |
N3 |
C2 |
115.0 |
121.8 |
N3 |
C4 |
H4 |
117.2 |
119.7 |
N3 |
C2 |
C1 |
124.5 |
121.1 |
N3 |
C2 |
H2 |
117.7 |
119.4 |
C2 |
C1 |
H1 |
120.8 |
120.4 |
C1 |
C2 |
H2 |
117.7 |
119.5 |
H161 |
C16 |
H162 |
109.4 |
109.5 |
H141 |
C14 |
H142 |
109.5 |
109.5 |
H141 |
C14 |
H143 |
109.4 |
109.4 |
H142 |
C14 |
H143 |
109.5 |
109.4 |
H151 |
C15 |
H152 |
109.5 |
109.5 |
Torsion Angles for V2Z
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C11 |
N10 |
C7 |
C6 |
359.8 |
0.1 |
C11 |
N10 |
C7 |
C8 |
180.4 |
180.0 |
C12 |
C11 |
N10 |
C16 |
179.2 |
180.0 |
N10 |
C11 |
C12 |
O6 |
180.5 |
180.1 |
N10 |
C11 |
C12 |
N7 |
0.2 |
0.0 |
N10 |
C11 |
C16 |
C15 |
87.8 |
360.0 |
N10 |
C11 |
C16 |
H161 |
207.6 |
120.0 |
N10 |
C11 |
C16 |
H162 |
328.0 |
240.0 |
C7 |
N10 |
C11 |
C12 |
359.8 |
359.9 |
C7 |
N10 |
C11 |
C16 |
180.6 |
180.0 |
C6 |
C7 |
N10 |
C8 |
179.3 |
180.1 |
N10 |
C7 |
C6 |
N7 |
0.6 |
359.9 |
N10 |
C7 |
C6 |
H6 |
180.6 |
180.0 |
N10 |
C7 |
C8 |
C9 |
344.9 |
0.0 |
N10 |
C7 |
C8 |
C4 |
164.4 |
179.7 |
C12 |
C11 |
N10 |
C7 |
359.8 |
359.9 |
N10 |
C11 |
C12 |
C16 |
180.7 |
180.0 |
C12 |
C11 |
C16 |
C15 |
268.6 |
180.0 |
C12 |
C11 |
C16 |
H161 |
28.3 |
300.0 |
C12 |
C11 |
C16 |
H162 |
148.8 |
60.0 |
O6 |
C12 |
C11 |
N7 |
180.3 |
180.0 |
C11 |
C12 |
N7 |
C6 |
0.2 |
360.0 |
C11 |
C12 |
N7 |
H7 |
180.2 |
180.0 |
C16 |
C11 |
N10 |
C7 |
180.6 |
180.0 |
N10 |
C11 |
C16 |
C12 |
179.3 |
180.0 |
C16 |
C11 |
C12 |
O6 |
359.8 |
0.0 |
C16 |
C11 |
C12 |
N7 |
179.5 |
180.0 |
C14 |
C15 |
C16 |
C11 |
113.6 |
180.0 |
C15 |
C16 |
C11 |
H161 |
240.2 |
240.0 |
C15 |
C16 |
C11 |
H162 |
119.8 |
120.0 |
C11 |
C16 |
C15 |
H151 |
353.3 |
60.0 |
C11 |
C16 |
C15 |
H152 |
233.9 |
300.0 |
H161 |
C16 |
C11 |
H162 |
239.6 |
239.9 |
O6 |
C12 |
C11 |
C16 |
359.8 |
0.0 |
C11 |
C12 |
O6 |
N7 |
179.6 |
180.0 |
O6 |
C12 |
N7 |
C6 |
179.8 |
180.0 |
O6 |
C12 |
N7 |
H7 |
359.8 |
360.0 |
N7 |
C12 |
C11 |
C16 |
179.5 |
180.0 |
C11 |
C12 |
N7 |
O6 |
180.3 |
180.0 |
C7 |
C6 |
N7 |
C12 |
359.4 |
0.0 |
C6 |
N7 |
C12 |
H7 |
180.0 |
180.0 |
C12 |
N7 |
C6 |
H6 |
179.4 |
180.0 |
C11 |
C16 |
C15 |
C14 |
113.6 |
180.0 |
C14 |
C15 |
C16 |
H161 |
353.9 |
60.0 |
C14 |
C15 |
C16 |
H162 |
233.4 |
300.0 |
C16 |
C15 |
C14 |
H151 |
239.7 |
240.0 |
C16 |
C15 |
C14 |
H152 |
120.3 |
120.0 |
H141 |
C14 |
C15 |
H142 |
240.0 |
239.9 |
H141 |
C14 |
C15 |
H143 |
120.0 |
119.9 |
H142 |
C14 |
C15 |
H143 |
240.0 |
240.0 |
H151 |
C15 |
C14 |
H152 |
240.6 |
240.0 |
C11 |
C16 |
C15 |
H161 |
119.8 |
120.0 |
C11 |
C16 |
C15 |
H162 |
240.2 |
240.0 |
C16 |
C15 |
C14 |
H141 |
180.0 |
59.9 |
C16 |
C15 |
C14 |
H142 |
300.0 |
180.0 |
C16 |
C15 |
C14 |
H143 |
60.0 |
300.0 |
C14 |
C15 |
C16 |
H151 |
120.3 |
120.0 |
C14 |
C15 |
C16 |
H152 |
239.7 |
240.0 |
H161 |
C16 |
C15 |
H162 |
120.5 |
120.0 |
H151 |
C15 |
C16 |
H152 |
119.4 |
120.0 |
N10 |
C7 |
C6 |
C8 |
180.6 |
179.9 |
C12 |
N7 |
C6 |
C7 |
359.4 |
0.0 |
C6 |
C7 |
C8 |
C9 |
165.6 |
180.0 |
C6 |
C7 |
C8 |
C4 |
345.0 |
359.6 |
C7 |
C6 |
N7 |
H7 |
179.4 |
180.0 |
N7 |
C6 |
C7 |
H6 |
180.0 |
179.9 |
N10 |
C7 |
C8 |
C6 |
179.4 |
180.1 |
C8 |
C7 |
C6 |
N7 |
180.0 |
180.0 |
C8 |
C7 |
C6 |
H6 |
0.0 |
0.1 |
C9 |
C8 |
C7 |
C4 |
180.6 |
180.3 |
C7 |
C8 |
C9 |
C1 |
180.3 |
180.0 |
C7 |
C8 |
C9 |
H9 |
0.3 |
360.0 |
C7 |
C8 |
C4 |
N3 |
180.5 |
180.0 |
C7 |
C8 |
C4 |
H4 |
0.5 |
0.1 |
C12 |
N7 |
C6 |
H7 |
180.0 |
180.0 |
N7 |
C6 |
C7 |
C8 |
180.0 |
180.0 |
C7 |
C6 |
N7 |
H6 |
180.0 |
180.1 |
C7 |
C8 |
C9 |
C4 |
179.5 |
179.7 |
C9 |
C8 |
C4 |
N3 |
359.9 |
359.7 |
C9 |
C8 |
C4 |
H4 |
179.9 |
179.8 |
C8 |
C9 |
C1 |
C2 |
358.9 |
360.0 |
C1 |
C9 |
C8 |
H9 |
180.0 |
180.0 |
C8 |
C9 |
C1 |
H1 |
178.9 |
180.0 |
C7 |
C8 |
C4 |
C9 |
180.6 |
180.3 |
C4 |
C8 |
C9 |
C1 |
0.8 |
0.3 |
C4 |
C8 |
C9 |
H9 |
180.8 |
180.3 |
C8 |
C4 |
N3 |
C2 |
359.7 |
0.0 |
N3 |
C4 |
C8 |
H4 |
180.0 |
180.0 |
C1 |
C9 |
C8 |
C4 |
0.8 |
0.3 |
C8 |
C9 |
C1 |
H9 |
180.0 |
180.0 |
N3 |
C2 |
C1 |
C9 |
0.8 |
359.8 |
C2 |
C1 |
C9 |
H1 |
180.0 |
180.0 |
C9 |
C1 |
C2 |
H2 |
180.8 |
180.0 |
C8 |
C4 |
N3 |
H4 |
180.0 |
180.0 |
C4 |
N3 |
C2 |
C1 |
360.0 |
0.2 |
C4 |
N3 |
C2 |
H2 |
180.0 |
180.0 |
C9 |
C1 |
C2 |
N3 |
0.8 |
359.8 |
C2 |
N3 |
C4 |
H4 |
179.7 |
180.0 |
N3 |
C2 |
C1 |
H1 |
180.7 |
179.7 |
C1 |
C2 |
N3 |
H2 |
180.0 |
180.2 |
C2 |
C1 |
C9 |
H9 |
178.9 |
180.0 |
C9 |
C1 |
C2 |
H1 |
180.0 |
180.0 |
N3 |
C2 |
C1 |
H2 |
180.0 |
179.8 |
C11 |
C16 |
H161 |
C15 |
241.5 |
240.0 |
C11 |
C16 |
H161 |
H162 |
120.7 |
120.0 |
C15 |
C16 |
H161 |
H162 |
239.2 |
240.0 |
H161 |
C16 |
C15 |
H151 |
233.6 |
300.0 |
H161 |
C16 |
C15 |
H152 |
114.1 |
180.0 |
C11 |
C16 |
H162 |
C15 |
118.6 |
120.0 |
C11 |
C16 |
H162 |
H161 |
239.3 |
240.0 |
C15 |
C16 |
H162 |
H161 |
120.7 |
120.0 |
H162 |
C16 |
C15 |
H151 |
113.1 |
180.0 |
H162 |
C16 |
C15 |
H152 |
353.7 |
60.0 |
C12 |
N7 |
H7 |
C6 |
180.0 |
180.0 |
H7 |
N7 |
C6 |
H6 |
359.4 |
360.0 |
H141 |
C14 |
C15 |
C16 |
180.0 |
59.9 |
C15 |
C14 |
H141 |
H142 |
120.0 |
120.1 |
C15 |
C14 |
H141 |
H143 |
240.0 |
240.0 |
H141 |
C14 |
C15 |
H151 |
300.3 |
180.0 |
H141 |
C14 |
C15 |
H152 |
59.7 |
299.9 |
H142 |
C14 |
H141 |
H143 |
120.0 |
119.9 |
H142 |
C14 |
C15 |
C16 |
300.0 |
180.0 |
C15 |
C14 |
H142 |
H141 |
239.9 |
240.0 |
C15 |
C14 |
H142 |
H143 |
120.0 |
120.0 |
H142 |
C14 |
C15 |
H151 |
60.3 |
300.0 |
H142 |
C14 |
C15 |
H152 |
179.7 |
60.0 |
H141 |
C14 |
H142 |
H143 |
240.1 |
240.1 |
H143 |
C14 |
C15 |
C16 |
60.0 |
300.0 |
C15 |
C14 |
H143 |
H141 |
120.0 |
119.9 |
C15 |
C14 |
H143 |
H142 |
240.0 |
239.9 |
H143 |
C14 |
C15 |
H151 |
180.3 |
60.0 |
H143 |
C14 |
C15 |
H152 |
299.7 |
180.0 |
H141 |
C14 |
H143 |
H142 |
120.0 |
120.0 |
C14 |
C15 |
H151 |
C16 |
238.2 |
240.0 |
H151 |
C15 |
C14 |
H141 |
300.3 |
180.0 |
H151 |
C15 |
C14 |
H142 |
60.3 |
300.0 |
H151 |
C15 |
C14 |
H143 |
180.3 |
60.0 |
C14 |
C15 |
H151 |
H152 |
119.1 |
120.0 |
H151 |
C15 |
C16 |
H161 |
233.6 |
300.0 |
H151 |
C15 |
C16 |
H162 |
113.1 |
180.0 |
C16 |
C15 |
H151 |
H152 |
240.8 |
240.0 |
C14 |
C15 |
H152 |
C16 |
121.7 |
120.0 |
H152 |
C15 |
C14 |
H141 |
59.7 |
299.9 |
H152 |
C15 |
C14 |
H142 |
179.7 |
60.0 |
H152 |
C15 |
C14 |
H143 |
299.7 |
180.0 |
C14 |
C15 |
H152 |
H151 |
240.9 |
240.1 |
H152 |
C15 |
C16 |
H161 |
114.1 |
180.0 |
H152 |
C15 |
C16 |
H162 |
353.7 |
60.0 |
C16 |
C15 |
H152 |
H151 |
119.2 |
120.0 |
H6 |
C6 |
C7 |
C8 |
0.0 |
0.1 |
C7 |
C6 |
H6 |
N7 |
180.0 |
179.9 |
H6 |
C6 |
N7 |
H7 |
359.4 |
360.0 |
H9 |
C9 |
C8 |
C4 |
180.8 |
180.3 |
C8 |
C9 |
H9 |
C1 |
180.0 |
180.0 |
H9 |
C9 |
C1 |
C2 |
178.9 |
180.0 |
H9 |
C9 |
C1 |
H1 |
358.9 |
-0.0 |
C8 |
C4 |
H4 |
N3 |
180.0 |
180.0 |
H4 |
C4 |
N3 |
C2 |
179.7 |
180.0 |
C9 |
C1 |
H1 |
C2 |
180.0 |
180.0 |
H1 |
C1 |
C9 |
H9 |
358.9 |
-0.0 |
H1 |
C1 |
C2 |
H2 |
0.7 |
360.0 |
N3 |
C2 |
H2 |
C1 |
180.0 |
180.2 |
H2 |
C2 |
C1 |
H1 |
0.7 |
360.0 |