PDB Chemical Component V13
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for V13
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C17 |
C16 |
1.501 |
1.530 |
| C17 |
O18 |
1.390 |
1.428 |
| F11 |
C6 |
1.338 |
1.351 |
| O20 |
S15 |
1.514 |
1.421 |
| C16 |
S15 |
1.805 |
1.814 |
| S15 |
C1 |
1.841 |
1.762 |
| S15 |
O19 |
1.525 |
1.422 |
| F12 |
C5 |
1.349 |
1.351 |
| C6 |
C5 |
1.386 |
1.386 |
| C6 |
C1 |
1.411 |
1.384 |
| C5 |
C4 |
1.412 |
1.384 |
| C1 |
C2 |
1.365 |
1.384 |
| C2 |
F14 |
1.325 |
1.351 |
| C2 |
C3 |
1.385 |
1.386 |
| C4 |
C3 |
1.387 |
1.384 |
| C4 |
S7 |
1.779 |
1.762 |
| O8 |
S7 |
1.502 |
1.421 |
| O9 |
S7 |
1.437 |
1.421 |
| C3 |
F13 |
1.313 |
1.351 |
| S7 |
N10 |
1.715 |
1.655 |
| C16 |
H1 |
1.100 |
1.090 |
| C16 |
H2 |
1.100 |
1.089 |
| C17 |
H3 |
1.100 |
1.090 |
| C17 |
H4 |
1.100 |
1.090 |
| O18 |
H5 |
0.950 |
0.967 |
| N10 |
H6 |
1.000 |
0.970 |
| N10 |
H7 |
1.000 |
0.970 |
Bond Angles for V13
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C17 |
C16 |
H1 |
111.1 |
109.5 |
| C17 |
C16 |
H2 |
111.1 |
109.5 |
| O18 |
C17 |
H3 |
110.4 |
109.5 |
| O18 |
C17 |
H4 |
110.4 |
109.5 |
| C17 |
O18 |
H5 |
109.5 |
114.0 |
| F11 |
C6 |
C5 |
117.1 |
120.0 |
| O20 |
S15 |
C1 |
103.0 |
104.3 |
| O20 |
S15 |
O19 |
98.8 |
121.0 |
| C16 |
S15 |
C1 |
123.3 |
104.5 |
| O19 |
S15 |
C1 |
110.9 |
104.3 |
| S15 |
C1 |
C2 |
120.3 |
120.0 |
| F12 |
C5 |
C4 |
120.3 |
120.0 |
| C6 |
C5 |
C4 |
119.0 |
120.0 |
| C6 |
C1 |
C2 |
117.4 |
120.0 |
| C5 |
C4 |
C3 |
119.0 |
120.0 |
| C5 |
C4 |
S7 |
116.4 |
120.0 |
| C1 |
C2 |
F14 |
120.2 |
120.0 |
| C1 |
C2 |
C3 |
122.2 |
120.0 |
| S7 |
C4 |
C3 |
124.6 |
120.0 |
| C4 |
C3 |
F13 |
124.6 |
119.9 |
| C4 |
S7 |
N10 |
114.3 |
107.2 |
| O9 |
S7 |
N10 |
106.5 |
106.4 |
| S7 |
N10 |
H6 |
109.5 |
120.1 |
| S7 |
N10 |
H7 |
109.5 |
120.0 |
| H1 |
C16 |
H2 |
109.5 |
109.4 |
| H3 |
C17 |
H4 |
109.5 |
109.4 |
| H6 |
N10 |
H7 |
109.5 |
119.9 |
Torsion Angles for V13
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C17 |
C16 |
S15 |
C1 |
331.9 |
180.0 |
| H1 |
C16 |
C17 |
H2 |
237.9 |
120.0 |
| O18 |
C17 |
C16 |
H1 |
201.7 |
60.0 |
| O18 |
C17 |
C16 |
H2 |
323.8 |
300.1 |
| H3 |
C17 |
O18 |
H4 |
121.2 |
120.0 |
| F11 |
C6 |
C5 |
C4 |
179.8 |
180.0 |
| F11 |
C6 |
C1 |
C2 |
178.1 |
180.3 |
| C16 |
S15 |
O20 |
C1 |
226.9 |
248.2 |
| O19 |
S15 |
O20 |
C1 |
113.9 |
116.7 |
| O20 |
S15 |
C1 |
C2 |
144.5 |
333.9 |
| O20 |
S15 |
C16 |
C1 |
121.5 |
111.7 |
| O19 |
S15 |
C16 |
C1 |
228.4 |
248.4 |
| C16 |
S15 |
C1 |
C2 |
269.2 |
90.0 |
| O20 |
S15 |
C1 |
O19 |
104.8 |
127.8 |
| C6 |
C1 |
S15 |
C2 |
174.7 |
180.2 |
| S15 |
C1 |
C2 |
F14 |
357.0 |
360.0 |
| S15 |
C1 |
C2 |
C3 |
179.6 |
179.7 |
| O20 |
S15 |
O19 |
C1 |
252.4 |
243.3 |
| C16 |
S15 |
O19 |
C1 |
138.1 |
111.7 |
| O19 |
S15 |
C1 |
C2 |
39.7 |
206.1 |
| C6 |
C5 |
F12 |
C4 |
178.4 |
180.0 |
| F12 |
C5 |
C4 |
C3 |
178.3 |
180.0 |
| F12 |
C5 |
C4 |
S7 |
359.4 |
0.0 |
| F12 |
C5 |
C6 |
C4 |
181.6 |
180.0 |
| C5 |
C6 |
C1 |
C2 |
356.2 |
0.2 |
| C6 |
C5 |
C4 |
C3 |
359.9 |
0.0 |
| C6 |
C5 |
C4 |
S7 |
181.1 |
180.0 |
| S15 |
C1 |
C6 |
C2 |
185.2 |
179.8 |
| C6 |
C1 |
C2 |
F14 |
182.1 |
179.8 |
| C6 |
C1 |
C2 |
C3 |
4.6 |
359.5 |
| S7 |
C4 |
C5 |
C3 |
181.2 |
180.0 |
| C5 |
C4 |
C3 |
F13 |
176.1 |
180.0 |
| C5 |
C4 |
S7 |
N10 |
175.5 |
90.0 |
| C1 |
C2 |
F14 |
C3 |
182.5 |
179.7 |
| C1 |
C2 |
C3 |
F14 |
177.5 |
180.3 |
| C5 |
C4 |
C3 |
S7 |
181.3 |
180.0 |
| C1 |
C2 |
C3 |
C4 |
356.7 |
0.6 |
| C3 |
C4 |
S7 |
N10 |
356.7 |
270.0 |
| C5 |
C4 |
S7 |
C3 |
178.7 |
180.0 |
| S7 |
C4 |
C3 |
F13 |
354.8 |
0.0 |
| O9 |
S7 |
C4 |
N10 |
246.3 |
246.5 |
| C4 |
S7 |
N10 |
H6 |
180.0 |
0.0 |
| C4 |
S7 |
N10 |
H7 |
300.0 |
180.0 |
| O8 |
S7 |
C4 |
C3 |
122.0 |
23.6 |
| O8 |
S7 |
N10 |
H6 |
53.9 |
246.5 |
| O8 |
S7 |
N10 |
H7 |
173.9 |
66.5 |
| O9 |
S7 |
C4 |
C3 |
243.0 |
156.4 |
| C4 |
S7 |
O9 |
N10 |
119.5 |
114.1 |
| O9 |
S7 |
N10 |
H6 |
290.1 |
113.5 |
| O9 |
S7 |
N10 |
H7 |
50.2 |
293.5 |
| C1 |
C2 |
C3 |
F13 |
181.1 |
180.2 |
| N10 |
S7 |
C4 |
C3 |
356.7 |
270.0 |
| H6 |
N10 |
S7 |
H7 |
240.0 |
180.0 |
| C17 |
C16 |
H1 |
H2 |
123.0 |
240.0 |
| H1 |
C16 |
S15 |
C1 |
213.0 |
300.0 |
| C17 |
C16 |
H2 |
H1 |
237.0 |
120.0 |
| H2 |
C16 |
S15 |
C1 |
90.9 |
60.0 |
| H3 |
C17 |
C16 |
H1 |
321.1 |
180.1 |
| H3 |
C17 |
C16 |
H2 |
83.2 |
60.1 |
| O18 |
C17 |
H3 |
H4 |
238.2 |
240.0 |
| H3 |
C17 |
O18 |
H5 |
60.6 |
60.1 |
| H4 |
C17 |
C16 |
H1 |
82.3 |
300.0 |
| H4 |
C17 |
C16 |
H2 |
204.4 |
180.0 |
| O18 |
C17 |
H4 |
H3 |
121.8 |
120.0 |
| H4 |
C17 |
O18 |
H5 |
299.4 |
300.1 |
| H5 |
O18 |
C17 |
H3 |
60.6 |
60.1 |
| H5 |
O18 |
C17 |
H4 |
299.4 |
300.1 |
| S7 |
N10 |
H6 |
H7 |
120.0 |
180.0 |
| S7 |
N10 |
H7 |
H6 |
240.0 |
180.0 |