Atom Nomenclature for UWN

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for UWN

Atom Name (V3) Atom Name (V2)
N3 N3
N4 N4
N2 N2
N1 N1
OAA OAA
OAB OAB
CAE CAE
CAF CAF
CAG CAG
CAH CAH
CAI CAI
CAJ CAJ
CAM CAM
CAN CAN
CAQ CAQ
CAR CAR
CAU CAU
CAV CAV
CAX CAX
CAY CAY
CAZ CAZ
CBB CBB
CBC CBC
CBD CBD
CBE CBE
CBF CBF
CBG CBG
CBI CBI
H1 H1
H3 H3
H6 H6
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
H2 H2
H4 H4
H5 H5
H7 H7
H8 H8
H27 H27
H33 H33
H34 H34
C8 C8
C9 C9
C10 C10
C7 C7
N5 N5
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39
H40 H40
H41 H41
H42 H42
H43 H43