PDB Chemical Component UQ8

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for UQ8

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C45 C44 1.531 1.507
C45 H45 1.100 1.090
C45 H45A 1.100 1.091
C45 H45B 1.099 1.089
C43 C44 1.517 1.311
C44 C46 1.506 1.507
C46 H46 1.100 1.090
C46 H46A 1.100 1.090
C46 H46B 1.100 1.090
C42 C43 1.536 1.507
C43 H43 1.080 1.080
C41 C42 1.523 1.529
C42 H42 1.100 1.090
C42 H42A 1.100 1.090
C39 C41 1.514 1.507
C41 H41 1.100 1.089
C41 H41A 1.100 1.091
C40 C39 1.527 1.507
C38 C39 1.369 1.310
C40 H40 1.101 1.090
C40 H40A 1.100 1.090
C40 H40B 1.100 1.091
C37 C38 1.388 1.507
C38 H38 1.080 1.081
C37 C36 1.529 1.530
C37 H37 1.100 1.089
C37 H37A 1.100 1.090
C34 C36 1.518 1.507
C36 H36 1.100 1.091
C36 H36A 1.100 1.090
C33 C34 1.393 1.311
C34 C35 1.387 1.507
C35 H35 1.100 1.090
C35 H35A 1.100 1.090
C32 C33 1.391 1.507
C33 H33 1.080 1.080
C35 H35B 1.100 1.090
C31 C32 1.552 1.530
C32 H32 1.100 1.090
C32 H32A 1.100 1.090
C29 C31 1.522 1.507
C31 H31 1.101 1.090
C31 H31A 1.100 1.090
C28 C29 1.391 1.310
C30 C29 1.562 1.507
C30 H30 1.100 1.089
C30 H30A 1.100 1.090
C30 H30B 1.100 1.090
C27 C28 1.389 1.507
C28 H28 1.080 1.080
C26 C27 1.536 1.530
C27 H27 1.100 1.090
C27 H27A 1.100 1.090
C24 C26 1.533 1.507
C26 H26 1.100 1.090
C26 H26A 1.100 1.090
C23 C24 1.378 1.311
C24 C25 1.538 1.507
C25 H25 1.100 1.090
C25 H25A 1.100 1.090
C25 H25B 1.100 1.089
C22 C23 1.398 1.506
C23 H23 1.080 1.080
C21 C22 1.528 1.530
C22 H22 1.100 1.091
C22 H22A 1.099 1.090
C19 C21 1.529 1.507
C21 H21 1.100 1.090
C21 H21A 1.100 1.090
C20 C19 1.528 1.506
C18 C19 1.535 1.310
C20 H20 1.100 1.091
C20 H20A 1.100 1.091
C20 H20B 1.100 1.090
C17 C18 1.535 1.507
C18 H18 1.080 1.080
C16 C17 1.538 1.529
C17 H17 1.100 1.090
C17 H17A 1.100 1.091
C14 C16 1.525 1.507
C16 H16 1.100 1.090
C16 H16A 1.100 1.091
C13 C14 1.393 1.310
C15 C14 1.540 1.507
C15 H15 1.100 1.090
C15 H15A 1.100 1.090
C15 H15B 1.100 1.090
C12 C13 1.393 1.507
C13 H13 1.080 1.081
C11 C12 1.542 1.530
C12 H12 1.100 1.090
C12 H12A 1.100 1.090
C9 C11 1.540 1.507
C11 H11 1.101 1.090
C11 H11A 1.100 1.090
C8 C9 1.526 1.310
C10 C9 1.538 1.507
C10 H10 1.100 1.090
C10 H10A 1.100 1.090
C10 H10B 1.100 1.090
C7 C8 1.532 1.507
C8 H8 1.080 1.080
C6 C7 1.548 1.507
C7 H7 1.100 1.091
C7 H7A 1.100 1.090
C1 C6 1.400 1.338
C5 C6 1.406 1.479
C2 C1 1.400 1.478
C1 C1M 1.394 1.507
C1M H1M 1.100 1.090
C1M H1MA 1.100 1.091
C1M H1MB 1.100 1.090
O2 C2 1.234 1.215
C3 C2 1.386 1.476
O3 C3 1.363 1.358
C3 C4 1.390 1.353
C3M O3 1.427 1.429
C3M H3M 1.100 1.090
C3M H3MA 1.100 1.090
C3M H3MB 1.100 1.090
O4 C4 1.367 1.357
C4 C5 1.402 1.476
C4M O4 1.436 1.430
C4M H4M 1.100 1.091
C4M H4MA 1.100 1.090
C4M H4MB 1.100 1.090
C5 O5 1.234 1.215

Bond Angles for UQ8

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C44 C45 H45 109.5 109.5
C44 C45 H45A 109.5 109.5
C44 C45 H45B 109.5 109.5
C45 C44 C46 108.8 120.0
H45 C45 H45A 109.5 109.5
H45 C45 H45B 109.4 109.5
H45A C45 H45B 109.5 109.5
C44 C46 H46 109.5 109.5
C44 C46 H46A 109.5 109.5
C44 C46 H46B 109.5 109.5
H46 C46 H46A 109.4 109.5
H46 C46 H46B 109.4 109.5
H46A C46 H46B 109.5 109.4
C42 C43 H43 124.3 120.1
C41 C42 H42 109.5 109.5
C41 C42 H42A 109.5 109.5
H42 C42 H42A 109.4 109.5
C39 C41 H41 109.2 109.5
C39 C41 H41A 109.1 109.4
H41 C41 H41A 110.0 109.5
H40 C40 H40A 109.4 109.5
H40 C40 H40B 109.5 109.5
H40A C40 H40B 109.5 109.5
C37 C38 H38 117.7 120.0
C36 C37 H37 110.8 109.5
C36 C37 H37A 111.7 109.5
C37 C36 H36 108.3 109.5
C37 C36 H36A 107.4 109.5
H37 C37 H37A 106.4 109.5
C34 C36 H36 108.3 109.5
C34 C36 H36A 107.4 109.5
H36 C36 H36A 112.4 109.4
C34 C35 H35 109.5 109.4
C34 C35 H35A 109.5 109.5
C34 C35 H35B 109.4 109.5
H35 C35 H35A 109.5 109.5
H35 C35 H35B 109.4 109.4
H35A C35 H35B 109.5 109.5
C32 C33 H33 115.7 120.0
C31 C32 H32 110.0 109.4
C31 C32 H32A 110.3 109.5
H32 C32 H32A 108.3 109.5
C29 C31 H31 108.2 109.5
C29 C31 H31A 107.3 109.5
H31 C31 H31A 112.6 109.5
H30 C30 H30A 109.4 109.5
H30 C30 H30B 109.5 109.5
H30A C30 H30B 109.5 109.4
C27 C28 H28 117.4 120.0
C26 C27 H27 108.8 109.5
C26 C27 H27A 108.2 109.5
H27 C27 H27A 111.2 109.5
C24 C26 H26 109.1 109.5
C24 C26 H26A 108.7 109.5
H26 C26 H26A 110.5 109.5
C24 C25 H25 109.5 109.5
C24 C25 H25A 109.5 109.5
C24 C25 H25B 109.4 109.5
H25 C25 H25A 109.5 109.4
H25 C25 H25B 109.5 109.5
H25A C25 H25B 109.5 109.5
C22 C23 H23 116.4 120.1
C21 C22 H22 109.0 109.5
C21 C22 H22A 108.6 109.5
H22 C22 H22A 110.7 109.4
C19 C21 H21 107.6 109.5
C19 C21 H21A 106.3 109.4
H21 C21 H21A 114.1 109.5
H20 C20 H20A 109.5 109.4
H20 C20 H20B 109.4 109.4
H20A C20 H20B 109.5 109.4
C17 C18 H18 124.3 120.0
C16 C17 H17 108.3 109.5
C16 C17 H17A 107.5 109.5
H17 C17 H17A 112.3 109.5
C14 C16 H16 109.7 109.5
C14 C16 H16A 109.9 109.5
H16 C16 H16A 109.0 109.4
H15 C15 H15A 109.5 109.5
H15 C15 H15B 109.5 109.5
H15A C15 H15B 109.5 109.4
C12 C13 H13 118.6 120.0
C11 C12 H12 108.1 109.5
C11 C12 H12A 107.2 109.5
H12 C12 H12A 112.8 109.5
C9 C11 H11 108.8 109.5
C9 C11 H11A 108.4 109.4
H11 C11 H11A 111.0 109.5
H10 C10 H10A 109.5 109.5
H10 C10 H10B 109.5 109.5
H10A C10 H10B 109.5 109.5
C7 C8 H8 123.5 120.0
C6 C7 H7 108.2 109.5
C6 C7 H7A 107.3 109.6
H7 C7 H7A 112.6 109.4
C1 C1M H1M 109.5 109.5
C1 C1M H1MA 109.4 109.5
C1 C1M H1MB 109.5 109.5
H1M C1M H1MA 109.5 109.5
H1M C1M H1MB 109.4 109.4
H1MA C1M H1MB 109.5 109.4
O3 C3 C4 120.4 120.0
C3 C4 C5 120.1 119.9
H3M C3M H3MA 109.5 109.4
H3M C3M H3MB 109.4 109.5
H3MA C3M H3MB 109.5 109.4
O4 C4 C5 121.0 120.1
C4 C5 O5 118.6 120.0
H4M C4M H4MA 109.5 109.5
H4M C4M H4MB 109.4 109.4
H4MA C4M H4MB 109.5 109.5

Torsion Angles for UQ8

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H45 C45 C44 H45A 240.0 240.0
H45 C45 C44 H45B 119.9 120.0
H45A C45 C44 H45B 240.0 240.0
C45 C44 C46 H46 339.8 360.0
C45 C44 C46 H46A 99.8 120.0
C45 C44 C46 H46B 219.8 239.9
C44 C45 H45 H45A 120.0 120.0
C44 C45 H45 H45B 240.0 240.0
H45 C45 C44 C46 181.3 90.0
H45A C45 H45 H45B 120.0 120.0
C44 C45 H45A H45 240.0 240.0
C44 C45 H45A H45B 120.0 120.0
H45A C45 C44 C46 301.3 210.0
H45 C45 H45A H45B 240.1 240.0
C44 C45 H45B H45 120.0 120.0
C44 C45 H45B H45A 240.0 240.0
H45B C45 C44 C46 61.3 330.0
H45 C45 H45B H45A 120.0 120.0
C43 C44 C45 H45 58.2 270.0
C43 C44 C45 H45A 178.2 30.0
C43 C44 C45 H45B 298.3 150.0
C43 C44 C46 H46 104.5 180.0
C43 C44 C46 H46A 224.5 300.1
C43 C44 C46 H46B 344.6 59.9
C46 C44 C45 H45 181.3 90.0
C46 C44 C45 H45A 301.3 210.0
C46 C44 C45 H45B 61.3 330.0
H46 C46 C44 H46A 240.0 240.0
H46 C46 C44 H46B 120.0 120.1
H46A C46 C44 H46B 240.0 240.1
C44 C46 H46 H46A 120.0 120.0
C44 C46 H46 H46B 240.0 240.0
H46A C46 H46 H46B 120.0 120.0
C44 C46 H46A H46 239.9 240.0
C44 C46 H46A H46B 120.0 119.9
H46 C46 H46A H46B 240.1 239.9
C44 C46 H46B H46 120.0 120.0
C44 C46 H46B H46A 240.0 240.1
H46 C46 H46B H46A 119.9 120.0
C41 C42 C43 H43 109.6 305.0
H42 C42 C41 H42A 119.9 120.1
H42 C42 C43 H43 229.5 65.0
C41 C42 H42 H42A 240.0 239.9
H42A C42 C43 H43 349.5 185.0
C41 C42 H42A H42 120.0 120.1
C39 C41 C42 H42 103.6 60.0
C39 C41 C42 H42A 343.7 300.0
H41 C41 C39 H41A 120.3 120.0
H41 C41 C42 H42 223.6 180.0
H41 C41 C42 H42A 103.7 59.9
C39 C41 H41 H41A 240.3 240.0
H41A C41 C42 H42 343.9 300.1
H41A C41 C42 H42A 224.0 180.0
C39 C41 H41A H41 119.8 120.0
C40 C39 C41 H41 116.6 155.0
C40 C39 C41 H41A 356.3 35.0
C38 C39 C41 H41 300.2 335.0
C38 C39 C41 H41A 179.9 215.0
H40A C40 H40 H40B 120.0 120.0
H40 C40 H40A H40B 240.0 240.0
H40 C40 H40B H40A 120.0 120.0
C36 C37 C38 H38 347.4 304.4
H37 C37 C36 H37A 118.5 120.0
C34 C36 C37 H36 240.0 240.0
C34 C36 C37 H36A 118.4 120.0
H36 C36 C37 H36A 238.4 240.0
H37 C37 C38 H38 107.4 64.4
C36 C37 H37 H37A 238.3 240.0
H37 C37 C36 H36 187.4 180.0
H37 C37 C36 H36A 309.0 300.0
H37A C37 C38 H38 225.9 184.4
C36 C37 H37A H37 121.1 120.0
H37A C37 C36 H36 69.0 60.0
H37A C37 C36 H36A 190.5 180.0
C34 C36 C37 H37 67.4 60.0
C34 C36 C37 H37A 308.9 300.0
C37 C36 C34 H36 120.0 120.0
C37 C36 C34 H36A 241.6 240.0
H36 C36 C34 H36A 121.6 120.0
H36 C36 C37 H37 187.4 180.0
H36 C36 C37 H37A 69.0 60.0
C37 C36 H36 H36A 118.5 120.0
C34 C36 H36 H36A 241.5 240.0
H36A C36 C37 H37 309.0 300.0
H36A C36 C37 H37A 190.5 180.0
C37 C36 H36A H36 241.0 240.0
C34 C36 H36A H36 119.0 120.0
C33 C34 C36 H36 234.5 335.0
C33 C34 C36 H36A 112.9 215.0
C33 C34 C35 H35 175.1 174.9
C33 C34 C35 H35A 295.1 295.0
C33 C34 C35 H35B 55.2 55.0
C35 C34 C36 H36 50.7 155.0
C35 C34 C36 H36A 289.1 35.0
H35 C35 C34 H35A 240.0 240.0
H35 C35 C34 H35B 120.0 119.9
H35A C35 C34 H35B 240.0 240.0
C34 C35 H35 H35A 120.0 120.0
C34 C35 H35 H35B 240.0 240.0
H35A C35 H35 H35B 120.0 120.0
C34 C35 H35A H35 240.0 240.0
C34 C35 H35A H35B 120.0 120.0
H35 C35 H35A H35B 240.0 240.0
C34 C35 H35B H35 120.0 119.9
C34 C35 H35B H35A 240.0 239.9
H35 C35 H35B H35A 120.0 120.0
C31 C32 C33 H33 25.7 304.4
H32 C32 C31 H32A 119.4 120.0
H32 C32 C33 H33 145.7 64.4
C31 C32 H32 H32A 239.4 240.0
H32A C32 C33 H33 265.1 184.4
C31 C32 H32A H32 120.4 119.9
C29 C31 C32 H32 66.9 60.0
C29 C31 C32 H32A 307.4 300.0
H31 C31 C29 H31A 121.7 120.0
H31 C31 C32 H32 186.8 180.0
H31 C31 C32 H32A 67.4 60.0
C29 C31 H31 H31A 241.6 239.9
H31A C31 C32 H32 308.6 299.9
H31A C31 C32 H32A 189.1 180.0
C29 C31 H31A H31 118.9 120.0
C28 C29 C31 H31 104.2 335.0
C28 C29 C31 H31A 342.5 215.0
C30 C29 C31 H31 284.0 155.0
C30 C29 C31 H31A 162.3 35.0
H30A C30 H30 H30B 120.0 120.0
H30 C30 H30A H30B 240.0 240.0
H30 C30 H30B H30A 120.0 120.0
C26 C27 C28 H28 329.7 304.2
H27 C27 C26 H27A 121.0 120.1
H27 C27 C28 H28 89.7 64.2
C26 C27 H27 H27A 240.9 239.9
H27A C27 C28 H28 210.7 184.2
C26 C27 H27A H27 119.4 120.1
C24 C26 C27 H27 50.2 60.0
C24 C26 C27 H27A 289.3 300.0
H26 C26 C24 H26A 120.6 120.0
H26 C26 C27 H27 170.2 180.0
H26 C26 C27 H27A 49.3 59.9
C24 C26 H26 H26A 240.5 240.0
H26A C26 C27 H27 290.8 300.1
H26A C26 C27 H27A 169.8 180.0
C24 C26 H26A H26 119.7 120.0
C23 C24 C26 H26 350.7 335.0
C23 C24 C26 H26A 230.1 215.0
C23 C24 C25 H25 183.1 184.0
C23 C24 C25 H25A 303.2 303.9
C23 C24 C25 H25B 63.1 64.0
C25 C24 C26 H26 171.1 155.0
C25 C24 C26 H26A 50.5 35.0
H25 C25 C24 H25A 240.0 240.1
H25 C25 C24 H25B 120.0 120.0
H25A C25 C24 H25B 240.0 239.9
C24 C25 H25 H25A 120.0 120.0
C24 C25 H25 H25B 240.0 240.0
H25A C25 H25 H25B 120.0 120.0
C24 C25 H25A H25 240.0 240.0
C24 C25 H25A H25B 120.0 120.1
H25 C25 H25A H25B 240.0 240.0
C24 C25 H25B H25 120.0 120.0
C24 C25 H25B H25A 240.0 240.0
H25 C25 H25B H25A 120.0 120.0
C21 C22 C23 H23 353.3 301.7
H22 C22 C21 H22A 120.6 120.0
H22 C22 C23 H23 113.3 61.7
C21 C22 H22 H22A 240.6 240.0
H22A C22 C23 H23 234.0 181.6
C21 C22 H22A H22 119.6 120.0
C19 C21 C22 H22 74.6 60.0
C19 C21 C22 H22A 314.0 300.0
H21 C21 C19 H21A 122.6 120.0
H21 C21 C22 H22 194.6 180.0
H21 C21 C22 H22A 74.0 60.0
C19 C21 H21 H21A 242.3 240.0
H21A C21 C22 H22 317.2 300.0
H21A C21 C22 H22A 196.6 180.0
C19 C21 H21A H21 118.4 120.0
C20 C19 C21 H21 52.8 155.0
C20 C19 C21 H21A 290.2 35.0
C18 C19 C21 H21 182.2 335.0
C18 C19 C21 H21A 59.6 215.0
H20A C20 H20 H20B 120.0 119.9
H20 C20 H20A H20B 240.1 240.1
H20 C20 H20B H20A 120.0 119.9
C16 C17 C18 H18 19.5 301.6
H17 C17 C16 H17A 121.5 120.0
H17 C17 C18 H18 139.5 61.7
C16 C17 H17 H17A 241.4 240.0
H17A C17 C18 H18 261.1 181.6
C16 C17 H17A H17 119.0 120.0
C14 C16 C17 H17 75.3 60.0
C14 C16 C17 H17A 313.8 300.0
H16 C16 C14 H16A 119.8 120.0
H16 C16 C17 H17 195.3 180.0
H16 C16 C17 H17A 73.8 60.0
C14 C16 H16 H16A 239.7 240.0
H16A C16 C17 H17 315.0 300.0
H16A C16 C17 H17A 193.5 180.0
C14 C16 H16A H16 120.2 120.0
C13 C14 C16 H16 19.3 335.0
C13 C14 C16 H16A 259.5 215.0
C15 C14 C16 H16 200.8 155.0
C15 C14 C16 H16A 81.0 35.0
H15A C15 H15 H15B 120.0 120.0
H15 C15 H15A H15B 240.0 239.9
H15 C15 H15B H15A 120.0 120.1
C11 C12 C13 H13 27.8 304.5
H12 C12 C11 H12A 121.8 120.0
H12 C12 C13 H13 147.8 64.5
C11 C12 H12 H12A 241.7 240.0
H12A C12 C13 H13 269.6 184.4
C11 C12 H12A H12 118.9 120.0
C9 C11 C12 H12 35.2 60.0
C9 C11 C12 H12A 273.4 300.0
H11 C11 C9 H11A 120.8 120.0
H11 C11 C12 H12 155.2 180.0
H11 C11 C12 H12A 33.4 60.0
C9 C11 H11 H11A 240.8 240.0
H11A C11 C12 H12 276.0 300.0
H11A C11 C12 H12A 154.2 180.0
C9 C11 H11A H11 119.5 120.0
C8 C9 C11 H11 21.8 335.0
C8 C9 C11 H11A 260.9 215.0
C10 C9 C11 H11 258.0 155.0
C10 C9 C11 H11A 137.2 35.0
H10A C10 H10 H10B 120.0 120.0
H10 C10 H10A H10B 240.0 240.0
H10 C10 H10B H10A 120.0 120.1
C6 C7 C8 H8 97.1 303.0
H7 C7 C6 H7A 121.7 120.0
H7 C7 C8 H8 217.1 63.0
C6 C7 H7 H7A 241.6 239.9
H7A C7 C8 H8 338.8 182.9
C6 C7 H7A H7 118.9 120.0
C1 C6 C7 H7 16.0 335.0
C1 C6 C7 H7A 254.3 215.0
C5 C6 C7 H7 196.3 154.8
C5 C6 C7 H7A 74.6 34.8
C2 C1 C1M H1M 311.6 270.0
C2 C1 C1M H1MA 71.6 30.0
C2 C1 C1M H1MB 191.6 150.0
H1M C1M C1 H1MA 240.0 240.0
H1M C1M C1 H1MB 120.0 120.0
H1MA C1M C1 H1MB 240.0 240.0
C1 C1M H1M H1MA 120.0 120.0
C1 C1M H1M H1MB 240.0 239.9
H1MA C1M H1M H1MB 120.0 119.9
C1 C1M H1MA H1M 240.0 240.0
C1 C1M H1MA H1MB 120.0 120.0
H1M C1M H1MA H1MB 240.0 240.1
C1 C1M H1MB H1M 120.0 120.0
C1 C1M H1MB H1MA 240.0 240.0
H1M C1M H1MB H1MA 120.0 120.0
O3 C3 C4 C5 180.2 179.7
O4 C4 C3 C5 180.4 180.2
C3 C4 C5 O5 180.6 180.0
C3M O3 C3 C4 264.8 246.5
H3MA C3M H3M H3MB 120.0 119.9
H3M C3M H3MA H3MB 240.0 240.1
H3M C3M H3MB H3MA 120.0 119.9
C3 C4 O4 C5 179.5 179.8
O4 C4 C5 O5 0.1 359.8
C4M O4 C4 C5 126.7 66.7
H4MA C4M H4M H4MB 120.0 120.0
H4M C4M H4MA H4MB 240.0 240.0
H4M C4M H4MB H4MA 120.0 120.0