Atom Nomenclature for UQ8

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for UQ8

Atom Name (V3) Atom Name (V2)
C45 C45
C44 C44
C46 C46
C43 C43
C42 C42
C41 C41
C39 C39
C40 C40
C38 C38
C37 C37
C36 C36
C34 C34
C35 C35
C33 C33
C32 C32
C31 C31
C29 C29
C30 C30
C28 C28
C27 C27
C26 C26
C24 C24
C25 C25
C23 C23
C22 C22
C21 C21
C19 C19
C20 C20
C18 C18
C17 C17
C16 C16
C14 C14
C15 C15
C13 C13
C12 C12
C11 C11
C9 C9
C10 C10
C8 C8
C7 C7
C6 C6
C1 C1
C1M C1M
C2 C2
O2 O2
C3 C3
O3 O3
C3M C3M
C4 C4
O4 O4
C4M C4M
C5 C5
O5 O5
H45 H45
H45A H45A
H45B H45B
H46 H46
H46A H46A
H46B H46B
H43 H43
H42 H42
H42A H42A
H41 H41
H41A H41A
H40 H40
H40A H40A
H40B H40B
H38 H38
H37 H37
H37A H37A
H36 H36
H36A H36A
H35 H35
H35A H35A
H35B H35B
H33 H33
H32 H32
H32A H32A
H31 H31
H31A H31A
H30 H30
H30A H30A
H30B H30B
H28 H28
H27 H27
H27A H27A
H26 H26
H26A H26A
H25 H25
H25A H25A
H25B H25B
H23 H23
H22 H22
H22A H22A
H21 H21
H21A H21A
H20 H20
H20A H20A
H20B H20B
H18 H18
H17 H17
H17A H17A
H16 H16
H16A H16A
H15 H15
H15A H15A
H15B H15B
H13 H13
H12 H12
H12A H12A
H11 H11
H11A H11A
H10 H10
H10A H10A
H10B H10B
H8 H8
H7 H7
H7A H7A
H1M H1M
H1MA H1MA
H1MB H1MB
H3M H3M
H3MA H3MA
H3MB H3MB
H4M H4M
H4MA H4MA
H4MB H4MB