Atom Nomenclature for UQ6

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for UQ6

Atom Name (V3) Atom Name (V2)
C1 C1
C1M C1M
C2 C2
O2 O2
C3 C3
C4 C4
C5 C5
O5 O5
C6 C6
O3 O3
C3M C3M
O4 O4
C4M C4M
C7 C7
C8 C8
C9 C9
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
C27 C27
C28 C28
C29 C29
C30 C30
C31 C31
C32 C32
C33 C33
C34 C34
C35 C35
C36 C36
H1M1 1H1M
H1M2 2H1M
H1M3 3H1M
HO2 HO2
HO5 HO5
H3M1 1H3M
H3M2 2H3M
H3M3 3H3M
H4M1 1H4M
H4M2 2H4M
H4M3 3H4M
H71 1H7
H72 2H7
H8 H8
H101 1H10
H102 2H10
H103 3H10
H111 1H11
H112 2H11
H121 1H12
H122 2H12
H13 H13
H151 1H15
H152 2H15
H153 3H15
H161 1H16
H162 2H16
H171 1H17
H172 2H17
H18 H18
H201 1H20
H202 2H20
H203 3H20
H211 1H21
H212 2H21
H221 1H22
H222 2H22
H23 H23
H251 1H25
H252 2H25
H253 3H25
H261 1H26
H262 2H26
H271 1H27
H272 2H27
H28 H28
H301 1H30
H302 2H30
H303 3H30
H311 1H31
H312 2H31
H321 1H32
H322 2H32
H33 H33
H351 1H35
H352 2H35
H353 3H35
H361 1H36
H362 2H36
H363 3H36