PDB Chemical Component UPV

Ideal Model

Chemical Description

Name 2'-O-{[(2,2-dimethylpropanoyl)oxy]methyl}uridine 5'-(dihydrogen phosphate)
Formula C15 H23 N2 O11 P
Formal charge 0
Molecular weight 438.324 g/mol
Component type RNA linking
Nonstandard Parent Id U

Chemical features

Atom count 52
Chiral atom count 4
Chiral atoms C1' C2' C3' C4'
Observed leaving atoms OP3 HOP3
Bond count 53
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-O-{[(2,2-dimethylpropanoyl)oxy]methyl}uridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3R,4R,5R)-2-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-4-oxidanyl-5-(phosphonooxymethyl)oxolan-3-yl]oxymethyl 2,2-dimethylpropanoate

Chemical Descriptors

Stereo SMILES (CACTVS) CC(C)(C)C(=O)OCO[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1N2C=CC(=O)NC2=O
SMILES (CACTVS) CC(C)(C)C(=O)OCO[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2C=CC(=O)NC2=O
Stereo SMILES (OpenEye) CC(C)(C)C(=O)OCO[C@@H]1[C@@H]([C@H](O[C@H]1N2C=CC(=O)NC2=O)COP(=O)(O)O)O
InChI descriptor InChI=1S/C15H23N2O11P/c1-15(2,3)13(20)26-7-25-11-10(19)8(6-27-29(22,23)24)28-12(11)17-5-4-9(18)16-14(17)21/h4-5,8,10-12,19H,6-7H2,1-3H3,(H,16,18,21)(H2,22,23,24)/t8-,10-,11-,12-/m1/s1
InChIKey descriptor AVEWAPSZWXGLGF-HJQYOEGKSA-N

Status Information

Last modified 2013-04-05
Created 2012-07-30
Release status REL
Model PDB code 2LVY
Processing site RCSB