PDB Chemical Component UPF

Ideal Model

Chemical Description

Name URIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUOROGALACTOSE
Synonyms URIDINE-5'-MONOPHOSPHATE 2-DEOXY-2-FLUORO-GALACTOPYRANOSYL-MONOPHOSPHATE ESTER
Formula C15 H23 F N2 O16 P2
Formal charge 0
Molecular weight 568.293 g/mol
Component type NON-POLYMER

Chemical features

Atom count 59
Chiral atom count 11
Chiral atoms C1D C2D C3D C4D PA PB C1' C2' C3' C4' C5'
Bond count 61
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3R,4S,5R,6R)-3-fluoro-4,5-dihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl dihydrogen diphosphate (non-preferred name)
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [[(2R,3R,4S,5R,6R)-3-fluoro-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-hydroxy-phosphoryl] hydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) OC[C@H]1O[C@H](O[P@@](O)(=O)O[P@@](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O)[C@H](F)[C@@H](O)[C@H]1O
SMILES (CACTVS) OC[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O)[CH](F)[CH](O)[CH]1O
Stereo SMILES (OpenEye) C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)O[P@@](=O)(O)O[C@@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O)F)O)O
InChI descriptor InChI=1S/C15H23FN2O16P2/c16-8-11(23)9(21)5(3-19)32-14(8)33-36(28,29)34-35(26,27)30-4-6-10(22)12(24)13(31-6)18-2-1-7(20)17-15(18)25/h1-2,5-6,8-14,19,21-24H,3-4H2,(H,26,27)(H,28,29)(H,17,20,25)/t5-,6-,8-,9+,10-,11-,12-,13-,14-/m1/s1
InChIKey descriptor NGTCPFGWXMBZEP-KBQKSTHMSA-N

Status Information

Last modified 2020-06-17
Created 2000-11-30
Release status REL
Model PDB code 1GA8
Processing site RCSB