Atom Nomenclature for UN9

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for UN9

Atom Name (V3) Atom Name (V2)
O18 O18
C16 C16
O17 O17
C15 C15
N14 N14
C12 C12
O13 O13
C9 C9
N8 N8
C7 C7
CL1 CL1
C2 C2
C10 C10
O19 O19
C3 C3
C4 C4
C5 C5
C6 C6
C1 C1
HO17 HO17
H151 1H15
H152 2H15
HN14 HN14
HO19 HO19
H4 H4
H5 H5
H6 H6
H1 H1