PDB Chemical Component UFT

Ideal Model

Chemical Description

Name 2'-deoxy-2'-fluorouridine 5'-(dihydrogen phosphate)
Formula C9 H12 F N2 O8 P
Formal charge 0
Molecular weight 326.172 g/mol
Component type DNA LINKING
Nonstandard Parent Id DU

Chemical features

Atom count 33
Chiral atom count 4
Chiral atoms C2' C4' C1' C3'
Observed leaving atoms OP3 HOP3 HO3'
Bond count 34
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-2'-fluorouridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3R,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-4-fluoro-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1[C@@H](F)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=CC(=O)NC2=O
SMILES (CACTVS) O[CH]1[CH](F)[CH](O[CH]1CO[P](O)(O)=O)N2C=CC(=O)NC2=O
Stereo SMILES (OpenEye) C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)F
InChI descriptor InChI=1S/C9H12FN2O8P/c10-6-7(14)4(3-19-21(16,17)18)20-8(6)12-2-1-5(13)11-9(12)15/h1-2,4,6-8,14H,3H2,(H,11,13,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1
InChIKey descriptor RTGGYPQTXNSBPD-XVFCMESISA-N

Status Information

Last modified 2011-06-04
Created 2008-07-07
Release status REL
Model PDB code 3DD2
Processing site RCSB