PDB Chemical Component UFT

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for UFT

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP3 P 1.607 1.609
OP1 P 1.467 1.481
P OP2 1.488 1.610
P O5' 1.595 1.610
OP3 HOP3 0.950 0.967
OP2 HOP2 0.950 0.967
O5' C5' 1.434 1.429
C6 N1 1.386 1.369
N1 C2 1.397 1.345
N1 C1' 1.477 1.464
C5 C6 1.342 1.350
C6 H6 1.080 1.080
N3 C2 1.377 1.346
C2 O2 1.229 1.216
C4 N3 1.387 1.348
O4 C4 1.239 1.218
C5 C4 1.436 1.416
C5 H5 1.080 1.079
C2' F2' 1.371 1.399
C3' C2' 1.529 1.545
C2' C1' 1.530 1.545
C2' H2' 1.100 1.090
C5' C4' 1.506 1.530
C5' H5' 1.100 1.090
C5' H5'A 1.100 1.091
C3' C4' 1.523 1.545
C4' O4' 1.453 1.444
C4' H4' 1.100 1.090
O4' C1' 1.422 1.444
C1' H1' 1.100 1.090
C3' O3' 1.426 1.429
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.967
N3 HN3 1.001 0.970

Bond Angles for UFT

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP3 P OP2 111.1 109.5
OP3 P O5' 103.1 109.5
P OP3 HOP3 109.5 114.0
OP1 P OP2 119.3 109.5
OP1 P O5' 109.4 109.5
OP2 P O5' 108.5 109.4
P OP2 HOP2 109.5 114.0
P O5' C5' 120.6 123.0
O5' C5' C4' 110.8 109.5
O5' C5' H5' 109.0 109.5
O5' C5' H5'A 108.7 109.5
C6 N1 C2 120.5 120.6
C6 N1 C1' 121.5 119.7
C2 N1 C1' 118.0 119.7
N1 C2 O2 123.2 119.5
N1 C1' C2' 112.5 110.4
N1 C1' O4' 109.0 110.3
N1 C1' H1' 107.1 110.3
C5 C6 H6 118.5 120.2
C4 N3 HN3 116.4 119.9
C3' C2' H2' 111.6 110.7
C1' C2' H2' 117.1 110.5
C2' C1' O4' 107.3 104.8
C2' C1' H1' 108.8 110.4
C4' C5' H5' 109.0 109.4
C4' C5' H5'A 108.7 109.5
C5' C4' O4' 109.9 110.4
C5' C4' H4' 102.7 110.3
H5' C5' H5'A 110.5 109.5
C3' C4' H4' 108.0 110.4
O4' C4' H4' 115.1 110.4
C4' O4' C1' 109.6 105.3
O4' C1' H1' 112.3 110.5
O3' C3' H3' 103.7 110.5
C3' O3' HO3' 109.5 114.0

Torsion Angles for UFT

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP3 OP2 129.7 240.0
OP1 P OP3 O5' 245.8 120.0
OP2 P OP3 O5' 116.0 240.0
OP3 P OP2 HOP2 235.5 59.9
OP3 P O5' C5' 96.4 175.0
OP3 P OP1 OP2 235.4 120.0
OP3 P OP1 O5' 109.7 240.0
OP1 P OP3 HOP3 30.4 300.0
OP2 P OP1 O5' 234.3 120.0
OP1 P OP2 HOP2 114.3 180.0
OP1 P O5' C5' 206.8 55.0
OP3 P OP2 O5' 247.3 120.0
OP2 P OP3 HOP3 260.7 60.1
OP1 P OP2 O5' 126.2 240.0
OP2 P O5' C5' 338.6 295.0
OP3 P O5' OP2 117.9 240.0
O5' P OP3 HOP3 144.6 180.0
OP1 P O5' OP2 228.3 120.0
O5' P OP2 HOP2 348.1 299.9
P O5' C5' C4' 190.7 180.0
P O5' C5' H5' 310.7 300.0
P O5' C5' H5'A 71.2 60.0
HOP3 OP3 P OP2 260.7 60.1
HOP3 OP3 P O5' 144.6 180.0
HOP2 OP2 P O5' 348.1 299.9
C4' C5' O5' H5' 240.0 240.1
C4' C5' O5' H5'A 119.4 120.1
O5' C5' C4' O4' 298.9 66.4
O5' C5' C4' H4' 176.0 304.2
H5' C5' O5' H5'A 239.5 240.0
C2 N1 C6 C1' 180.1 180.3
C6 N1 C2 O2 179.1 179.7
C6 N1 C1' C2' 259.6 295.3
C6 N1 C1' O4' 18.4 50.7
C6 N1 C1' H1' 140.1 173.1
C6 N1 C2 C1' 179.9 179.7
C2 N1 C1' C2' 79.5 115.0
C2 N1 C1' O4' 198.3 230.4
C2 N1 C1' H1' 320.0 352.7
C6 N1 C1' C2 180.1 180.3
C1' N1 C2 O2 359.2 0.0
N1 C1' C2' H2' 331.1 24.0
C2' C1' N1 O4' 241.2 244.6
C2' C1' N1 H1' 119.5 122.3
C4' O4' C1' N1 243.1 200.6
O4' C1' N1 H1' 238.3 237.6
C5 C6 N1 C1' 180.5 179.7
H6 C6 N1 C2 180.7 180.0
H6 C6 N1 C1' 0.5 359.7
N3 C2 N1 C1' 179.4 180.0
O2 C2 N1 C1' 359.2 0.0
O4 C4 N3 HN3 3.3 0.1
C4 C5 C6 H6 180.1 180.5
C5 C4 N3 HN3 180.5 180.5
H5 C5 C6 H6 0.1 360.0
N1 C1' C2' F2' 211.6 261.5
C1' C2' C3' H2' 234.4 241.3
C3' C2' C1' H1' 211.4 265.1
N1 C1' C2' O4' 119.8 118.8
N1 C1' C2' H1' 241.5 237.8
C3' C2' C1' H2' 121.8 118.8
C4' O4' C1' C2' 5.1 319.5
O4' C1' C2' H1' 121.7 118.9
H2' C2' C1' O4' 211.3 265.2
H2' C2' C1' H1' 89.6 146.2
O5' C5' C4' H5' 120.0 120.0
O5' C5' C4' H5'A 240.6 239.9
H5' C5' C4' H5'A 120.5 120.0
C3' C4' C5' H4' 242.1 237.7
O4' C4' C5' H4' 122.9 122.3
C5' C4' O4' C1' 145.4 159.4
O5' C5' H5' C4' 238.9 240.0
O5' C5' H5' H5'A 119.4 120.0
C4' C5' H5' H5'A 240.6 240.0
H5' C5' C4' O4' 178.9 306.5
H5' C5' C4' H4' 56.0 184.2
O5' C5' H5'A C4' 120.8 120.1
O5' C5' H5'A H5' 240.4 240.0
C4' C5' H5'A H5' 119.6 120.0
H5'A C5' C4' O4' 58.4 186.5
H5'A C5' C4' H4' 295.4 64.2
C4' C3' C2' H2' 162.7 118.7
C3' C4' C5' H5' 298.1 61.9
C3' C4' C5' H5'A 177.5 301.9
C5' C4' C3' H4' 115.0 122.2
O4' C4' C3' H4' 236.8 241.1
N1 C1' O4' C4' 243.1 200.6
C2' C1' O4' C4' 5.1 319.5
O4' C4' C5' H5' 178.9 306.5
O4' C4' C5' H5'A 58.4 186.5
C5' C4' O4' H4' 244.7 237.8
C3' C4' O4' H4' 118.5 118.9
C4' O4' C1' H1' 124.6 78.4
H4' C4' C5' H5' 56.0 184.2
H4' C4' C5' H5'A 295.4 64.2
C5' C4' H4' O4' 119.4 122.3
H4' C4' O4' C1' 260.7 281.6
N1 C1' O4' C2' 237.9 241.1
N1 C1' O4' H1' 118.5 122.3
O4' C1' C2' H2' 211.3 265.2
C2' C1' O4' H1' 240.5 241.1
C1' O4' C4' H4' 260.7 281.6
N1 C1' H1' C2' 121.8 122.3
N1 C1' H1' O4' 240.4 237.7
H1' C1' C2' H2' 89.6 146.2
C2' C1' H1' O4' 118.6 115.4
O3' C3' C2' H2' 280.7 237.4
O3' C3' C4' H4' 325.7 336.3
H3' C3' C2' H2' 38.0 0.1
H3' C3' C4' H4' 208.7 213.6
H3' C3' O3' HO3' 13.6 298.8
HO3' O3' C3' H3' 13.6 298.8