PDB Chemical Component UFT
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for UFT
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
OP3 |
P |
1.607 |
1.609 |
OP1 |
P |
1.467 |
1.481 |
P |
OP2 |
1.488 |
1.610 |
P |
O5' |
1.595 |
1.610 |
OP3 |
HOP3 |
0.950 |
0.967 |
OP2 |
HOP2 |
0.950 |
0.967 |
O5' |
C5' |
1.434 |
1.429 |
C6 |
N1 |
1.386 |
1.369 |
N1 |
C2 |
1.397 |
1.345 |
N1 |
C1' |
1.477 |
1.464 |
C5 |
C6 |
1.342 |
1.350 |
C6 |
H6 |
1.080 |
1.080 |
N3 |
C2 |
1.377 |
1.346 |
C2 |
O2 |
1.229 |
1.216 |
C4 |
N3 |
1.387 |
1.348 |
O4 |
C4 |
1.239 |
1.218 |
C5 |
C4 |
1.436 |
1.416 |
C5 |
H5 |
1.080 |
1.079 |
C2' |
F2' |
1.371 |
1.399 |
C3' |
C2' |
1.529 |
1.545 |
C2' |
C1' |
1.530 |
1.545 |
C2' |
H2' |
1.100 |
1.090 |
C5' |
C4' |
1.506 |
1.530 |
C5' |
H5' |
1.100 |
1.090 |
C5' |
H5'A |
1.100 |
1.091 |
C3' |
C4' |
1.523 |
1.545 |
C4' |
O4' |
1.453 |
1.444 |
C4' |
H4' |
1.100 |
1.090 |
O4' |
C1' |
1.422 |
1.444 |
C1' |
H1' |
1.100 |
1.090 |
C3' |
O3' |
1.426 |
1.429 |
C3' |
H3' |
1.100 |
1.090 |
O3' |
HO3' |
0.950 |
0.967 |
N3 |
HN3 |
1.001 |
0.970 |
Bond Angles for UFT
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
OP3 |
P |
OP2 |
111.1 |
109.5 |
OP3 |
P |
O5' |
103.1 |
109.5 |
P |
OP3 |
HOP3 |
109.5 |
114.0 |
OP1 |
P |
OP2 |
119.3 |
109.5 |
OP1 |
P |
O5' |
109.4 |
109.5 |
OP2 |
P |
O5' |
108.5 |
109.4 |
P |
OP2 |
HOP2 |
109.5 |
114.0 |
P |
O5' |
C5' |
120.6 |
123.0 |
O5' |
C5' |
C4' |
110.8 |
109.5 |
O5' |
C5' |
H5' |
109.0 |
109.5 |
O5' |
C5' |
H5'A |
108.7 |
109.5 |
C6 |
N1 |
C2 |
120.5 |
120.6 |
C6 |
N1 |
C1' |
121.5 |
119.7 |
C2 |
N1 |
C1' |
118.0 |
119.7 |
N1 |
C2 |
O2 |
123.2 |
119.5 |
N1 |
C1' |
C2' |
112.5 |
110.4 |
N1 |
C1' |
O4' |
109.0 |
110.3 |
N1 |
C1' |
H1' |
107.1 |
110.3 |
C5 |
C6 |
H6 |
118.5 |
120.2 |
C4 |
N3 |
HN3 |
116.4 |
119.9 |
C3' |
C2' |
H2' |
111.6 |
110.7 |
C1' |
C2' |
H2' |
117.1 |
110.5 |
C2' |
C1' |
O4' |
107.3 |
104.8 |
C2' |
C1' |
H1' |
108.8 |
110.4 |
C4' |
C5' |
H5' |
109.0 |
109.4 |
C4' |
C5' |
H5'A |
108.7 |
109.5 |
C5' |
C4' |
O4' |
109.9 |
110.4 |
C5' |
C4' |
H4' |
102.7 |
110.3 |
H5' |
C5' |
H5'A |
110.5 |
109.5 |
C3' |
C4' |
H4' |
108.0 |
110.4 |
O4' |
C4' |
H4' |
115.1 |
110.4 |
C4' |
O4' |
C1' |
109.6 |
105.3 |
O4' |
C1' |
H1' |
112.3 |
110.5 |
O3' |
C3' |
H3' |
103.7 |
110.5 |
C3' |
O3' |
HO3' |
109.5 |
114.0 |
Torsion Angles for UFT
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
OP1 |
P |
OP3 |
OP2 |
129.7 |
240.0 |
OP1 |
P |
OP3 |
O5' |
245.8 |
120.0 |
OP2 |
P |
OP3 |
O5' |
116.0 |
240.0 |
OP3 |
P |
OP2 |
HOP2 |
235.5 |
59.9 |
OP3 |
P |
O5' |
C5' |
96.4 |
175.0 |
OP3 |
P |
OP1 |
OP2 |
235.4 |
120.0 |
OP3 |
P |
OP1 |
O5' |
109.7 |
240.0 |
OP1 |
P |
OP3 |
HOP3 |
30.4 |
300.0 |
OP2 |
P |
OP1 |
O5' |
234.3 |
120.0 |
OP1 |
P |
OP2 |
HOP2 |
114.3 |
180.0 |
OP1 |
P |
O5' |
C5' |
206.8 |
55.0 |
OP3 |
P |
OP2 |
O5' |
247.3 |
120.0 |
OP2 |
P |
OP3 |
HOP3 |
260.7 |
60.1 |
OP1 |
P |
OP2 |
O5' |
126.2 |
240.0 |
OP2 |
P |
O5' |
C5' |
338.6 |
295.0 |
OP3 |
P |
O5' |
OP2 |
117.9 |
240.0 |
O5' |
P |
OP3 |
HOP3 |
144.6 |
180.0 |
OP1 |
P |
O5' |
OP2 |
228.3 |
120.0 |
O5' |
P |
OP2 |
HOP2 |
348.1 |
299.9 |
P |
O5' |
C5' |
C4' |
190.7 |
180.0 |
P |
O5' |
C5' |
H5' |
310.7 |
300.0 |
P |
O5' |
C5' |
H5'A |
71.2 |
60.0 |
HOP3 |
OP3 |
P |
OP2 |
260.7 |
60.1 |
HOP3 |
OP3 |
P |
O5' |
144.6 |
180.0 |
HOP2 |
OP2 |
P |
O5' |
348.1 |
299.9 |
C4' |
C5' |
O5' |
H5' |
240.0 |
240.1 |
C4' |
C5' |
O5' |
H5'A |
119.4 |
120.1 |
O5' |
C5' |
C4' |
O4' |
298.9 |
66.4 |
O5' |
C5' |
C4' |
H4' |
176.0 |
304.2 |
H5' |
C5' |
O5' |
H5'A |
239.5 |
240.0 |
C2 |
N1 |
C6 |
C1' |
180.1 |
180.3 |
C6 |
N1 |
C2 |
O2 |
179.1 |
179.7 |
C6 |
N1 |
C1' |
C2' |
259.6 |
295.3 |
C6 |
N1 |
C1' |
O4' |
18.4 |
50.7 |
C6 |
N1 |
C1' |
H1' |
140.1 |
173.1 |
C6 |
N1 |
C2 |
C1' |
179.9 |
179.7 |
C2 |
N1 |
C1' |
C2' |
79.5 |
115.0 |
C2 |
N1 |
C1' |
O4' |
198.3 |
230.4 |
C2 |
N1 |
C1' |
H1' |
320.0 |
352.7 |
C6 |
N1 |
C1' |
C2 |
180.1 |
180.3 |
C1' |
N1 |
C2 |
O2 |
359.2 |
0.0 |
N1 |
C1' |
C2' |
H2' |
331.1 |
24.0 |
C2' |
C1' |
N1 |
O4' |
241.2 |
244.6 |
C2' |
C1' |
N1 |
H1' |
119.5 |
122.3 |
C4' |
O4' |
C1' |
N1 |
243.1 |
200.6 |
O4' |
C1' |
N1 |
H1' |
238.3 |
237.6 |
C5 |
C6 |
N1 |
C1' |
180.5 |
179.7 |
H6 |
C6 |
N1 |
C2 |
180.7 |
180.0 |
H6 |
C6 |
N1 |
C1' |
0.5 |
359.7 |
N3 |
C2 |
N1 |
C1' |
179.4 |
180.0 |
O2 |
C2 |
N1 |
C1' |
359.2 |
0.0 |
O4 |
C4 |
N3 |
HN3 |
3.3 |
0.1 |
C4 |
C5 |
C6 |
H6 |
180.1 |
180.5 |
C5 |
C4 |
N3 |
HN3 |
180.5 |
180.5 |
H5 |
C5 |
C6 |
H6 |
0.1 |
360.0 |
N1 |
C1' |
C2' |
F2' |
211.6 |
261.5 |
C1' |
C2' |
C3' |
H2' |
234.4 |
241.3 |
C3' |
C2' |
C1' |
H1' |
211.4 |
265.1 |
N1 |
C1' |
C2' |
O4' |
119.8 |
118.8 |
N1 |
C1' |
C2' |
H1' |
241.5 |
237.8 |
C3' |
C2' |
C1' |
H2' |
121.8 |
118.8 |
C4' |
O4' |
C1' |
C2' |
5.1 |
319.5 |
O4' |
C1' |
C2' |
H1' |
121.7 |
118.9 |
H2' |
C2' |
C1' |
O4' |
211.3 |
265.2 |
H2' |
C2' |
C1' |
H1' |
89.6 |
146.2 |
O5' |
C5' |
C4' |
H5' |
120.0 |
120.0 |
O5' |
C5' |
C4' |
H5'A |
240.6 |
239.9 |
H5' |
C5' |
C4' |
H5'A |
120.5 |
120.0 |
C3' |
C4' |
C5' |
H4' |
242.1 |
237.7 |
O4' |
C4' |
C5' |
H4' |
122.9 |
122.3 |
C5' |
C4' |
O4' |
C1' |
145.4 |
159.4 |
O5' |
C5' |
H5' |
C4' |
238.9 |
240.0 |
O5' |
C5' |
H5' |
H5'A |
119.4 |
120.0 |
C4' |
C5' |
H5' |
H5'A |
240.6 |
240.0 |
H5' |
C5' |
C4' |
O4' |
178.9 |
306.5 |
H5' |
C5' |
C4' |
H4' |
56.0 |
184.2 |
O5' |
C5' |
H5'A |
C4' |
120.8 |
120.1 |
O5' |
C5' |
H5'A |
H5' |
240.4 |
240.0 |
C4' |
C5' |
H5'A |
H5' |
119.6 |
120.0 |
H5'A |
C5' |
C4' |
O4' |
58.4 |
186.5 |
H5'A |
C5' |
C4' |
H4' |
295.4 |
64.2 |
C4' |
C3' |
C2' |
H2' |
162.7 |
118.7 |
C3' |
C4' |
C5' |
H5' |
298.1 |
61.9 |
C3' |
C4' |
C5' |
H5'A |
177.5 |
301.9 |
C5' |
C4' |
C3' |
H4' |
115.0 |
122.2 |
O4' |
C4' |
C3' |
H4' |
236.8 |
241.1 |
N1 |
C1' |
O4' |
C4' |
243.1 |
200.6 |
C2' |
C1' |
O4' |
C4' |
5.1 |
319.5 |
O4' |
C4' |
C5' |
H5' |
178.9 |
306.5 |
O4' |
C4' |
C5' |
H5'A |
58.4 |
186.5 |
C5' |
C4' |
O4' |
H4' |
244.7 |
237.8 |
C3' |
C4' |
O4' |
H4' |
118.5 |
118.9 |
C4' |
O4' |
C1' |
H1' |
124.6 |
78.4 |
H4' |
C4' |
C5' |
H5' |
56.0 |
184.2 |
H4' |
C4' |
C5' |
H5'A |
295.4 |
64.2 |
C5' |
C4' |
H4' |
O4' |
119.4 |
122.3 |
H4' |
C4' |
O4' |
C1' |
260.7 |
281.6 |
N1 |
C1' |
O4' |
C2' |
237.9 |
241.1 |
N1 |
C1' |
O4' |
H1' |
118.5 |
122.3 |
O4' |
C1' |
C2' |
H2' |
211.3 |
265.2 |
C2' |
C1' |
O4' |
H1' |
240.5 |
241.1 |
C1' |
O4' |
C4' |
H4' |
260.7 |
281.6 |
N1 |
C1' |
H1' |
C2' |
121.8 |
122.3 |
N1 |
C1' |
H1' |
O4' |
240.4 |
237.7 |
H1' |
C1' |
C2' |
H2' |
89.6 |
146.2 |
C2' |
C1' |
H1' |
O4' |
118.6 |
115.4 |
O3' |
C3' |
C2' |
H2' |
280.7 |
237.4 |
O3' |
C3' |
C4' |
H4' |
325.7 |
336.3 |
H3' |
C3' |
C2' |
H2' |
38.0 |
0.1 |
H3' |
C3' |
C4' |
H4' |
208.7 |
213.6 |
H3' |
C3' |
O3' |
HO3' |
13.6 |
298.8 |
HO3' |
O3' |
C3' |
H3' |
13.6 |
298.8 |