PDB Chemical Component UDP

Ideal Model

Chemical Description

Name URIDINE-5'-DIPHOSPHATE
Formula C9 H14 N2 O12 P2
Formal charge 0
Molecular weight 404.161 g/mol
Component type RNA LINKING

Chemical features

Atom count 39
Chiral atom count 4
Chiral atoms C1' C2' C3' C4'
Observed leaving atoms O2B
Bond count 40
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) uridine 5'-(trihydrogen diphosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl phosphono hydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
SMILES (CACTVS) O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
Stereo SMILES (OpenEye) C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)OP(=O)(O)O)O)O
InChI descriptor InChI=1S/C9H14N2O12P2/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(22-8)3-21-25(19,20)23-24(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1
InChIKey descriptor XCCTYIAWTASOJW-XVFCMESISA-N

Status Information

Last modified 2011-06-04
Created 1999-07-08
Release status REL
Model PDB code 1NAH
Processing site RCSB