PDB Chemical Component UD5

Ideal Model

Chemical Description

Name 5-FLUOROURIDINE
Formula C9 H12 F N2 O8 P
Formal charge 0
Molecular weight 326.172 g/mol
Component type RNA LINKING
Nonstandard Parent Id U

Chemical features

Atom count 33
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Bond count 34
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5'-O-(dihydroxyphosphanyl)-5-fluorouridine
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-5-(5-fluoro-2,4-dioxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphite

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1[C@@H](O)[C@@H](O[C@@H]1COP(O)O)N2C=C(F)C(=O)NC2=O
SMILES (CACTVS) O[CH]1[CH](O)[CH](O[CH]1COP(O)O)N2C=C(F)C(=O)NC2=O
Stereo SMILES (OpenEye) C1=C(C(=O)NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)COP(O)O)O)O)F
InChI descriptor InChI=1S/C9H12FN2O8P/c10-3-1-12(9(16)11-7(3)15)8-6(14)5(13)4(20-8)2-19-21(17)18/h1,4-6,8,13-14,17-18H,2H2,(H,11,15,16)/t4-,5-,6-,8-/m1/s1
InChIKey descriptor OWIMOOFVTCJDCZ-UAKXSSHOSA-N

Status Information

Last modified 2011-06-04
Created 2005-06-01
Release status REL
Model PDB code 1ZL3
Processing site RCSB