PDB Chemical Component UCP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for UCP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.391 1.345
N1 C6 1.393 1.368
N1 C1' 1.567 1.464
C2 O2 1.197 1.215
C2 N3 1.384 1.346
N3 C4 1.352 1.349
N3 HN3 1.020 0.971
C4 O4 1.294 1.218
C4 C5 1.377 1.415
C5 C6 1.322 1.350
C5 H5 1.102 1.080
C6 H6 1.103 1.080
C1' C2' 1.542 1.545
C1' O4' 1.426 1.445
C1' H1' 1.116 1.089
C2' C3' 1.534 1.545
C2' H2'1 1.116 1.091
C2' H2'2 1.115 1.090
C3' O3' 1.434 1.429
C3' C4' 1.553 1.544
C3' H3' 1.114 1.091
O3' HO'3 0.950 0.966
C4' O4' 1.453 1.446
C4' C5' 1.451 1.530
C4' H4' 1.115 1.090
C5' O5' 1.294 1.429
C5' H5'1 1.115 1.090
C5' H5'2 1.115 1.090
O5' PA 1.540 1.609
PA O1A 1.528 1.479
PA O2A 1.578 1.610
PA O3A 1.610 1.609
O2A HOA2 0.949 0.966
O3A PB 1.502 1.610
PB O1B 1.463 1.480
PB O2B 1.631 1.609
PB CC 1.490 1.823
O2B HOB2 0.950 0.966
CC PG 1.640 1.822
CC HCC1 1.115 1.090
CC HCC2 1.115 1.090
PG O1G 1.575 1.480
PG O2G 1.450 1.610
PG O3G 1.464 1.608
O2G HOG2 0.949 0.967
O3G HOG3 0.949 0.966

Bond Angles for UCP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 116.7 120.6
C2 N1 C1' 150.2 119.7
N1 C2 O2 118.2 119.5
N1 C2 N3 119.9 120.9
C6 N1 C1' 93.1 119.7
N1 C6 C5 124.7 119.7
N1 C6 H6 120.4 120.1
N1 C1' C2' 113.2 110.4
N1 C1' O4' 108.0 110.5
N1 C1' H1' 108.1 110.4
O2 C2 N3 121.9 119.6
C2 N3 C4 119.1 120.3
C2 N3 HN3 121.6 119.9
C4 N3 HN3 119.3 119.8
N3 C4 O4 117.5 120.3
N3 C4 C5 123.0 119.4
O4 C4 C5 119.5 120.3
C4 C5 C6 116.6 119.1
C4 C5 H5 123.6 120.4
C6 C5 H5 119.8 120.4
C5 C6 H6 114.8 120.2
C2' C1' O4' 109.8 104.8
C2' C1' H1' 106.2 110.3
C1' C2' C3' 106.4 104.1
C1' C2' H2'1 113.3 110.5
C1' C2' H2'2 113.4 110.6
O4' C1' H1' 111.6 110.3
C1' O4' C4' 109.5 105.4
C3' C2' H2'1 113.4 110.5
C3' C2' H2'2 113.4 110.6
C2' C3' O3' 99.5 110.5
C2' C3' C4' 104.1 104.2
C2' C3' H3' 128.7 110.5
H2'1 C2' H2'2 97.1 110.5
O3' C3' C4' 130.1 110.5
O3' C3' H3' 101.6 110.5
C3' O3' HO'3 99.6 106.8
C4' C3' H3' 96.9 110.5
C3' C4' O4' 110.1 104.7
C3' C4' C5' 111.7 110.7
C3' C4' H4' 105.6 110.3
O4' C4' C5' 102.3 110.4
O4' C4' H4' 114.4 110.3
C5' C4' H4' 112.9 110.3
C4' C5' O5' 110.8 109.5
C4' C5' H5'1 111.7 109.5
C4' C5' H5'2 111.7 109.4
O5' C5' H5'1 111.7 109.5
O5' C5' H5'2 111.8 109.4
C5' O5' PA 109.3 106.8
H5'1 C5' H5'2 98.7 109.5
O5' PA O1A 101.0 109.5
O5' PA O2A 104.7 109.4
O5' PA O3A 105.5 109.5
O1A PA O2A 125.4 109.5
O1A PA O3A 111.0 109.5
O2A PA O3A 107.2 109.4
PA O2A HOA2 104.7 106.9
PA O3A PB 128.5 106.8
O3A PB O1B 109.6 109.5
O3A PB O2B 102.0 109.5
O3A PB CC 92.9 109.5
O1B PB O2B 122.5 109.5
O1B PB CC 115.9 109.4
O2B PB CC 108.8 109.5
PB O2B HOB2 102.0 106.8
PB CC PG 126.5 109.5
PB CC HCC1 106.2 109.5
PB CC HCC2 106.2 109.4
PG CC HCC1 106.3 109.5
PG CC HCC2 106.3 109.5
CC PG O1G 110.6 109.5
CC PG O2G 104.3 109.5
CC PG O3G 101.5 109.5
HCC1 CC HCC2 103.3 109.5
O1G PG O2G 117.2 109.4
O1G PG O3G 111.4 109.5
O2G PG O3G 110.5 109.4
PG O2G HOG2 104.3 106.9
PG O3G HOG3 101.5 106.9

Torsion Angles for UCP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 N1 C2 C1' 178.2 179.7
C2 N1 C6 C5 0.8 0.3
C2 N1 C6 H6 180.8 180.2
C2 N1 C1' C2' 112.9 299.7
C2 N1 C1' O4' 234.7 55.1
C2 N1 C1' H1' 355.6 177.4
O2 C2 N1 N3 180.1 180.5
N1 C2 N3 C4 0.3 0.6
N1 C2 N3 HN3 180.3 180.2
C2 N1 C6 C1' 180.9 180.3
C6 N1 C2 O2 179.5 180.0
C6 N1 C2 N3 359.3 359.4
C6 N1 C1' C2' 294.5 120.0
C6 N1 C1' O4' 56.3 235.4
C6 N1 C1' H1' 177.1 357.8
C4 C5 C6 N1 359.5 0.0
N1 C6 C5 H5 179.6 179.9
C5 C6 N1 H6 180.0 180.0
C2 N1 C1' C6 178.4 179.7
C1' N1 C2 O2 1.2 0.3
C1' N1 C2 N3 181.1 179.8
C1' N1 C6 C5 179.9 179.9
C1' N1 C6 H6 359.9 359.9
C2' C1' N1 O4' 238.2 244.6
C2' C1' N1 H1' 117.4 122.2
N1 C1' C2' C3' 117.3 142.9
N1 C1' C2' H2'1 242.5 24.3
N1 C1' C2' H2'2 352.0 261.7
O4' C1' N1 H1' 239.1 237.7
N1 C1' O4' C4' 238.1 200.7
O2 C2 N1 C6 179.5 180.0
O2 C2 N1 C1' 1.2 0.3
N1 C2 O2 N3 179.9 179.5
O2 C2 N3 C4 180.2 180.0
O2 C2 N3 HN3 0.2 359.7
N3 C2 N1 C6 359.3 359.4
N3 C2 N1 C1' 181.1 179.8
N1 C2 N3 O2 180.1 180.5
C4 N3 C2 HN3 180.0 180.3
C2 N3 C4 O4 179.5 179.7
C2 N3 C4 C5 0.0 359.7
C2 N3 C4 HN3 180.0 179.7
O4 C4 N3 C5 179.5 180.0
N3 C4 C5 C6 0.0 360.0
N3 C4 C5 H5 180.0 180.1
C2 N3 HN3 C4 180.0 180.3
HN3 N3 C4 O4 359.5 0.0
HN3 N3 C4 C5 180.0 180.1
O4 C4 N3 HN3 359.5 0.0
N3 C4 O4 C5 180.5 180.0
O4 C4 C5 C6 180.5 180.0
O4 C4 C5 H5 0.5 0.1
N1 C6 C5 C4 359.5 0.0
C5 C4 N3 HN3 180.0 180.1
N3 C4 C5 O4 179.5 180.0
C6 C5 C4 H5 180.1 179.9
C4 C5 C6 H6 179.5 180.1
C5 C6 N1 C1' 179.9 179.9
N1 C6 C5 H6 180.0 180.0
C4 C5 C6 H5 179.9 180.1
C4 C5 H5 C6 180.1 179.9
H5 C5 C6 H6 359.6 360.0
H6 C6 N1 C1' 359.9 359.9
N1 C6 H6 C5 180.0 180.0
H6 C6 C5 H5 359.6 360.0
N1 C1' C2' O4' 120.7 119.0
N1 C1' C2' H1' 241.5 237.7
O4' C1' C2' H1' 120.8 118.7
C2' C1' O4' C4' 1.9 319.6
C3' C2' C1' H2'1 234.7 118.7
C3' C2' C1' H2'2 125.3 241.3
C1' C2' C3' O3' 139.1 118.7
C1' C2' C3' C4' 3.4 359.9
C1' C2' C3' H3' 252.4 241.3
H2'1 C2' C1' H2'2 250.6 122.6
N1 C1' O4' C2' 236.2 241.1
N1 C1' O4' H1' 118.7 122.4
C2' C1' O4' H1' 242.5 241.3
O4' C1' C2' C3' 356.5 23.9
O4' C1' C2' H2'1 121.8 265.3
O4' C1' C2' H2'2 231.2 142.7
C3' C4' O4' C1' 0.4 40.3
C1' O4' C4' C5' 119.2 159.5
C1' O4' C4' H4' 241.7 281.6
N1 C1' H1' C2' 121.7 122.3
N1 C1' H1' O4' 241.4 237.6
C2' C1' H1' O4' 119.7 115.3
H1' C1' C2' C3' 235.7 265.2
H1' C1' C2' H2'1 1.0 146.5
H1' C1' C2' H2'2 110.4 23.9
H1' C1' O4' C4' 119.4 78.4
C3' C2' C1' O4' 356.5 23.9
C3' C2' C1' H1' 235.7 265.2
C1' C2' C3' H2'1 125.2 241.4
C1' C2' C3' H2'2 234.7 118.8
H2'1 C2' C3' H2'2 109.5 237.4
O3' C3' C2' C4' 135.7 118.7
O3' C3' C2' H3' 246.7 237.4
C2' C3' O3' HO'3 180.0 63.3
C4' C3' C2' H3' 111.0 118.7
C2' C3' C4' O4' 357.5 336.2
C2' C3' C4' C5' 244.6 217.2
C2' C3' C4' H4' 121.5 94.9
H2'1 C2' C1' O4' 121.8 265.3
H2'1 C2' C1' H1' 1.0 146.5
C1' C2' H2'1 C3' 238.6 114.7
C1' C2' H2'1 H2'2 119.3 237.4
C3' C2' H2'1 H2'2 240.7 122.7
H2'1 C2' C3' O3' 13.9 237.3
H2'1 C2' C3' C4' 238.2 118.6
H2'1 C2' C3' H3' 127.2 359.9
H2'2 C2' C1' O4' 231.2 142.7
H2'2 C2' C1' H1' 110.4 23.9
C1' C2' H2'2 C3' 121.5 245.3
C1' C2' H2'2 H2'1 240.8 122.6
C3' C2' H2'2 H2'1 119.3 237.3
H2'2 C2' C3' O3' 264.4 359.9
H2'2 C2' C3' C4' 128.7 241.2
H2'2 C2' C3' H3' 17.7 122.5
O3' C3' C2' H2'1 13.9 237.3
O3' C3' C2' H2'2 264.4 359.9
C2' C3' O3' C4' 242.4 245.2
C2' C3' O3' H3' 132.9 122.6
C4' C3' O3' H3' 250.6 237.4
O3' C3' C4' O4' 241.8 217.5
O3' C3' C4' C5' 128.8 98.5
O3' C3' C4' H4' 5.8 336.2
C1' O4' C4' C3' 0.4 40.3
C4' C3' C2' H2'1 238.2 118.6
C4' C3' C2' H2'2 128.7 241.2
C2' C3' C4' O3' 115.7 118.7
C2' C3' C4' H3' 227.2 241.3
O3' C3' C4' H3' 111.5 122.6
C4' C3' O3' HO'3 297.6 178.1
O4' C4' C3' C5' 113.0 118.9
O4' C4' C3' H4' 236.0 241.3
C5' C4' C3' H4' 123.1 122.4
C3' C4' C5' O5' 257.9 176.9
C3' C4' C5' H5'1 23.2 296.9
C3' C4' C5' H5'2 132.6 56.9
H3' C3' C2' H2'1 127.2 359.9
H3' C3' C2' H2'2 17.7 122.5
C2' C3' H3' O3' 247.6 237.4
C2' C3' H3' C4' 114.2 114.8
O3' C3' H3' C4' 226.6 237.4
H3' C3' O3' HO'3 47.1 300.7
H3' C3' C4' O4' 130.3 94.9
H3' C3' C4' C5' 17.3 335.9
H3' C3' C4' H4' 254.2 213.6
HO'3 O3' C3' C4' 297.6 178.1
HO'3 O3' C3' H3' 47.1 300.7
C4' O4' C1' H1' 119.4 78.4
O4' C4' C3' H3' 130.3 94.9
C3' C4' O4' C5' 241.1 240.8
C3' C4' O4' H4' 118.7 118.7
C5' C4' O4' H4' 237.5 237.9
O4' C4' C5' O5' 140.2 61.4
O4' C4' C5' H5'1 265.5 181.4
O4' C4' C5' H5'2 14.9 301.4
C5' C4' C3' H3' 17.3 335.9
C3' C4' C5' O4' 117.7 115.5
C3' C4' C5' H4' 241.2 237.6
O4' C4' C5' H4' 123.5 122.1
O5' C5' C4' H5'1 234.7 239.9
O5' C5' C4' H5'2 125.3 119.9
C4' C5' O5' PA 141.1 180.0
H5'1 C5' C4' H5'2 250.6 240.0
H4' C4' C3' H3' 254.2 213.6
C3' C4' H4' O4' 238.8 244.8
C3' C4' H4' C5' 122.3 122.6
O4' C4' H4' C5' 243.5 237.8
H4' C4' C5' O5' 16.7 299.2
H4' C4' C5' H5'1 142.0 59.3
H4' C4' C5' H5'2 251.4 179.3
O5' C5' C4' H4' 16.7 299.2
C4' C5' O5' H5'1 125.3 120.1
C4' C5' O5' H5'2 234.8 240.1
H5'1 C5' O5' H5'2 109.5 120.0
C5' O5' PA O1A 177.8 60.0
C5' O5' PA O2A 46.3 300.0
C5' O5' PA O3A 293.4 180.1
H5'1 C5' C4' H4' 142.0 59.3
C4' C5' H5'1 O5' 235.3 239.9
C4' C5' H5'1 H5'2 117.6 120.0
O5' C5' H5'1 H5'2 242.3 240.0
H5'1 C5' O5' PA 15.9 60.0
H5'2 C5' C4' H4' 251.4 179.3
C4' C5' H5'2 O5' 124.7 120.0
C4' C5' H5'2 H5'1 242.4 240.0
O5' C5' H5'2 H5'1 117.7 120.0
H5'2 C5' O5' PA 266.4 300.0
PA O5' C5' H5'1 15.9 60.0
PA O5' C5' H5'2 266.4 300.0
O1A PA O5' O2A 131.5 120.0
O1A PA O5' O3A 244.4 240.0
O2A PA O5' O3A 112.9 119.9
O5' PA O2A HOA2 180.0 300.0
O5' PA O3A PB 289.7 180.0
O5' PA O1A O2A 242.8 240.0
O5' PA O1A O3A 111.5 120.0
O2A PA O1A O3A 228.6 240.0
O1A PA O2A HOA2 64.6 180.0
O1A PA O3A PB 38.3 300.0
O5' PA O2A O1A 115.5 120.0
O5' PA O2A O3A 248.3 240.0
O1A PA O2A O3A 132.8 120.0
O2A PA O3A PB 178.5 60.0
O5' PA O3A O1A 251.4 240.0
O5' PA O3A O2A 111.2 120.0
O1A PA O3A O2A 219.8 240.0
O3A PA O2A HOA2 291.7 60.0
PA O3A PB O1B 131.7 60.0
PA O3A PB O2B 0.4 299.9
PA O3A PB CC 250.5 180.0
HOA2 O2A PA O3A 291.7 60.0
O1B PB O3A O2B 131.3 120.0
O1B PB O3A CC 241.2 240.0
O2B PB O3A CC 109.9 120.0
O3A PB O2B HOB2 180.0 300.0
O3A PB CC PG 103.2 180.0
O3A PB CC HCC1 228.5 300.0
O3A PB CC HCC2 338.0 60.0
O3A PB O1B O2B 240.7 240.0
O3A PB O1B CC 103.4 120.0
O2B PB O1B CC 222.7 240.0
O1B PB O2B HOB2 57.1 180.0
O1B PB CC PG 216.7 300.0
O1B PB CC HCC1 341.9 60.0
O1B PB CC HCC2 91.4 180.0
O3A PB O2B O1B 122.9 120.0
O3A PB O2B CC 262.7 240.0
O1B PB O2B CC 139.9 120.0
O2B PB CC PG 359.5 60.0
O2B PB CC HCC1 124.8 180.0
O2B PB CC HCC2 234.2 300.0
O3A PB CC O1B 246.6 240.0
O3A PB CC O2B 103.7 120.0
O1B PB CC O2B 217.2 240.0
CC PB O2B HOB2 277.2 60.0
PG CC PB HCC1 234.7 239.9
PG CC PB HCC2 125.3 120.0
PB CC PG O1G 357.8 60.0
PB CC PG O2G 124.6 180.0
PB CC PG O3G 239.5 300.0
HCC1 CC PB HCC2 250.5 240.1
HOB2 O2B PB CC 277.2 60.0
PB CC PG HCC1 125.2 120.0
PB CC PG HCC2 234.7 240.0
HCC1 CC PG HCC2 109.5 120.0
O1G PG CC O2G 233.2 240.0
O1G PG CC O3G 118.3 120.1
O2G PG CC O3G 245.1 240.0
CC PG O2G HOG2 180.0 180.1
CC PG O3G HOG3 180.0 300.0
PB CC HCC1 PG 223.1 240.0
PB CC HCC1 HCC2 111.5 119.9
PG CC HCC1 HCC2 248.4 239.9
HCC1 CC PG O1G 232.6 300.0
HCC1 CC PG O2G 359.4 60.0
HCC1 CC PG O3G 114.3 180.0
PB CC HCC2 PG 136.9 120.0
PB CC HCC2 HCC1 248.5 240.1
PG CC HCC2 HCC1 111.6 120.1
HCC2 CC PG O1G 123.1 180.0
HCC2 CC PG O2G 249.9 300.0
HCC2 CC PG O3G 4.8 59.9
O1G PG CC HCC1 232.6 300.0
O1G PG CC HCC2 123.1 180.0
CC PG O1G O2G 119.3 120.0
CC PG O1G O3G 247.9 240.0
O2G PG O1G O3G 128.6 120.0
O1G PG O2G HOG2 302.6 300.0
O1G PG O3G HOG3 62.3 180.0
O2G PG CC HCC1 359.4 60.0
O2G PG CC HCC2 249.9 300.0
CC PG O2G O1G 237.4 240.0
CC PG O2G O3G 108.4 120.0
O1G PG O2G O3G 231.0 240.0
O2G PG O3G HOG3 290.2 60.0
O3G PG CC HCC1 114.3 180.0
O3G PG CC HCC2 4.8 59.9
CC PG O3G O1G 117.7 120.0
CC PG O3G O2G 249.8 240.0
O1G PG O3G O2G 132.1 120.0
O3G PG O2G HOG2 71.7 60.0
HOG2 O2G PG O3G 71.7 60.0