PDB Chemical Component UCG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for UCG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O5 C8 1.202 1.215
N1 C8 1.315 1.347
N1 C7 1.314 1.348
O4 C7 1.225 1.218
C8 N 1.401 1.345
C7 C5 1.381 1.415
N C 1.469 1.465
N C6 1.323 1.369
C5 C6 1.380 1.350
O2 C1 1.392 1.429
N6 C12 1.328 1.372
C C1 1.521 1.549
C O 1.412 1.444
C1 C2 1.492 1.548
O14 P1 1.559 1.479
N3 C12 1.324 1.363
N3 C11 1.297 1.351
C12 N2 1.333 1.314
O9 C11 1.204 1.220
O C3 1.428 1.437
C11 C9 1.448 1.415
C2 O3 1.401 1.429
C2 C3 1.517 1.541
N2 C10 1.323 1.338
P1 O3 1.576 1.610
P1 O15 1.434 1.610
P1 O11 1.574 1.611
C3 C4 1.518 1.530
C9 C10 1.430 1.399
C9 N5 1.304 1.355
O16 P2 1.561 1.479
C10 N4 1.299 1.369
O11 C18 1.405 1.429
O12 C15 1.383 1.448
O12 P2 1.546 1.633
O8 P 1.595 1.480
C15 C16 1.490 1.548
C15 C14 1.486 1.543
N5 C13 1.321 1.301
C4 O1 1.409 1.429
N4 C13 1.309 1.365
N4 C14 1.440 1.465
P2 O13 1.576 1.628
P2 O17 1.426 1.610
C16 O13 1.396 1.432
C16 C17 1.508 1.547
O1 P 1.576 1.610
C18 C17 1.519 1.530
C14 O10 1.387 1.437
P O6 1.459 1.611
P O7 1.587 1.609
C17 O10 1.406 1.445
C5 H1 1.080 1.080
C6 H2 1.079 1.080
N1 H3 1.000 0.970
C H4 1.100 1.090
C1 H5 1.100 1.090
O2 H6 0.950 0.967
C3 H7 1.100 1.090
C4 H8 1.100 1.090
C4 H9 1.100 1.090
O6 H10 0.950 0.967
O7 H11 0.950 0.967
C2 H12 1.100 1.090
O15 H13 0.949 0.967
C18 H14 1.100 1.090
C18 H15 1.100 1.090
C17 H16 1.099 1.090
C16 H17 1.100 1.090
O17 H18 0.951 0.967
C15 H19 1.100 1.090
C14 H20 1.099 1.090
C13 H21 1.080 1.080
N6 H23 1.000 0.970
N6 H24 1.000 0.970
N3 H22 1.000 0.970

Bond Angles for UCG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O5 C8 N 118.2 119.6
N1 C8 N 123.3 120.9
C8 N1 H3 120.2 119.8
O4 C7 C5 118.5 120.3
C8 N C 121.5 119.7
C7 C5 C6 120.5 119.1
C7 C5 H1 119.8 120.5
N C C1 111.0 110.7
N C O 113.4 110.6
N C H4 108.9 110.5
N C6 H2 120.2 120.1
C6 C5 H1 119.8 120.4
C5 C6 H2 120.3 120.2
O2 C1 C2 104.5 110.9
O2 C1 H5 113.4 110.8
C1 C O 105.7 103.5
C C1 C2 105.9 102.1
C1 C H4 108.2 110.7
C C1 H5 111.3 110.9
C O C3 111.4 107.0
O C H4 109.7 110.7
C1 C2 O3 113.3 110.5
C1 C2 C3 102.5 104.2
C2 C1 H5 111.7 111.0
C1 C2 H12 110.2 110.5
O14 P1 O11 105.5 109.5
C11 N3 H22 118.7 119.8
O C3 C4 109.6 109.9
O C3 H7 109.4 109.9
O3 C2 H12 111.6 110.5
C2 C3 H7 108.3 110.0
O15 P1 O11 113.6 109.4
P1 O15 H13 109.5 114.0
P1 O11 C18 123.4 123.0
C3 C4 O1 112.1 109.5
C4 C3 H7 108.2 109.8
C3 C4 H8 108.8 109.5
C3 C4 H9 108.8 109.5
O16 P2 O13 112.0 110.9
O16 P2 O17 114.1 110.8
O11 C18 C17 108.7 109.5
O11 C18 H14 109.7 109.5
O11 C18 H15 109.7 109.6
O12 C15 C14 110.0 107.7
O12 C15 H19 113.3 112.3
O12 P2 O13 96.0 102.2
C15 C16 H17 111.7 111.7
C15 C14 O10 102.6 107.4
C14 C15 H19 111.6 112.8
C15 C14 H20 110.7 109.9
N5 C13 H21 124.3 125.1
C4 O1 P 124.5 123.0
O1 C4 H8 108.8 109.5
O1 C4 H9 108.8 109.5
N4 C13 H21 124.2 125.1
N4 C14 H20 111.5 109.9
O17 P2 O13 114.0 110.9
C16 O13 P2 111.2 105.0
P2 O17 H18 109.5 114.0
O13 C16 H17 113.2 111.1
C16 C17 O10 105.4 103.4
C16 C17 H16 109.4 110.8
O1 P O6 107.4 109.5
O1 P O7 111.8 109.5
C18 C17 O10 110.3 110.7
C17 C18 H14 109.7 109.4
C17 C18 H15 109.7 109.5
C18 C17 H16 109.3 110.6
O6 P O7 108.8 109.5
P O6 H10 109.5 114.0
P O7 H11 109.5 114.1
O10 C17 H16 110.9 110.5
H8 C4 H9 109.5 109.4
H14 C18 H15 109.5 109.4
H23 N6 H24 120.0 120.0

Torsion Angles for UCG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N1 C8 O5 N 181.4 180.0
O5 C8 N1 H3 359.5 360.0
O5 C8 N C 2.9 0.0
O5 C8 N1 N 178.5 180.0
N1 C8 N C 181.4 180.0
N1 C7 C5 H1 180.6 180.2
O4 C7 C5 C6 179.1 180.0
O4 C7 C5 H1 359.1 359.9
N C8 N1 H3 181.0 180.0
C8 N C C1 120.1 115.0
C8 N C O 238.8 229.1
C8 N C H4 1.2 352.0
C8 N C6 H2 180.4 179.8
C6 C5 C7 H1 180.0 180.1
C7 C5 C6 H2 179.7 180.0
C N C6 H2 358.2 360.0
C1 C N O 241.3 245.9
N C C1 C2 105.2 155.5
C1 C N H4 119.0 122.9
N C C1 H5 343.6 37.3
N C O C3 238.2 201.4
O C N H4 237.7 237.0
N C6 C5 H1 179.6 180.0
C5 C6 N H2 180.0 180.0
C7 C5 C6 H1 180.0 179.9
N C6 C5 H2 180.0 180.0
O2 C1 C O 94.2 155.2
C C1 O2 C2 246.9 247.3
O2 C1 C H4 336.8 36.6
C C1 O2 H5 125.0 123.6
O2 C1 C2 O3 29.3 339.6
O2 C1 C2 C3 272.0 220.9
C2 C1 O2 H5 238.1 236.3
O2 C1 C2 H12 155.1 102.1
N C C1 O 123.3 118.5
N C C1 H4 240.6 237.1
O2 C1 C C2 112.2 118.2
O2 C1 C H5 233.8 236.5
C1 C O C3 359.9 320.0
O C C1 H4 117.4 118.6
C C1 C2 O3 145.0 97.8
C C1 C2 C3 27.7 339.1
C2 C1 C H5 121.6 118.3
C C1 C2 H12 270.8 220.3
N C O C1 238.3 241.5
N C O H4 121.9 122.9
O C C1 C2 342.0 37.0
C1 C O H4 243.6 241.4
O C C1 H5 220.4 278.8
C O C3 C4 142.7 145.9
C O C3 H7 261.3 266.9
O2 C1 C2 H5 123.0 123.6
C2 C1 C O 342.0 37.0
C2 C1 C H4 224.6 278.4
C C1 C2 H5 238.7 241.8
O3 C2 C1 H12 234.2 237.5
C1 C2 C3 H7 89.4 117.5
O15 P1 O14 O11 234.2 240.0
O14 P1 O15 H13 360.0 180.0
O14 P1 O11 C18 181.0 305.1
O9 C11 N3 H22 359.7 359.5
C3 O C H4 116.3 78.6
C1 C2 C3 O 332.1 358.0
C2 C3 O H7 116.6 119.5
O C3 C4 O1 245.8 66.4
C4 C3 O H7 241.4 239.0
O C3 C4 H8 6.2 186.4
O C3 C4 H9 125.4 306.4
C1 C2 O3 C3 246.5 245.2
O3 C2 C1 H5 266.3 216.0
C1 C2 O3 H12 125.1 122.5
O3 C2 C3 H7 329.1 358.8
C1 C2 C3 O3 120.4 118.7
C3 C2 C1 H5 149.0 97.3
C1 C2 C3 H12 242.9 241.3
O C3 C2 H7 242.6 240.5
C4 C3 C2 H7 121.2 121.0
C2 C3 C4 H8 125.7 304.3
C2 C3 C4 H9 244.9 64.3
P1 O3 C2 H12 321.5 358.9
O14 P1 O15 O11 121.5 120.0
O15 P1 O11 C18 307.6 65.1
O11 P1 O15 H13 238.5 59.9
P1 O11 C18 C17 160.5 180.0
P1 O11 C18 H14 280.4 299.9
P1 O11 C18 H15 40.7 59.9
C1 C2 C3 C4 210.7 238.6
O C3 C4 H7 119.3 121.0
C2 C3 C4 H7 238.7 238.9
C3 C4 O1 P 129.4 180.0
O1 C4 C3 H8 239.6 240.0
O1 C4 C3 H9 120.4 120.0
H8 C4 C3 H9 240.8 240.0
C9 N5 C13 H21 180.1 180.0
O12 P2 O16 O13 103.2 112.8
O17 P2 O16 O13 228.6 236.4
C16 O13 P2 O16 85.5 97.5
O16 P2 O17 H18 0.0 303.6
C10 N4 C13 H21 180.6 180.2
C10 N4 C14 H20 187.6 323.7
O11 C18 C17 O10 285.7 66.4
C17 C18 O11 H14 240.1 240.1
C17 C18 O11 H15 119.9 120.1
O11 C18 C17 H16 163.6 303.5
H14 C18 O11 H15 239.7 240.0
C15 O12 P2 O13 5.2 34.5
O12 C15 C16 H17 93.9 147.7
O12 C15 C14 O10 156.6 115.7
C14 C15 O12 H19 125.8 124.7
O12 C15 C14 H20 36.6 356.2
O16 P2 O12 O13 245.2 241.7
O17 P2 O12 O13 119.5 118.2
C16 O13 P2 O12 336.3 339.2
O12 P2 O17 H18 120.9 67.3
O8 P O6 H10 0.0 180.0
O8 P O7 H11 360.0 60.0
O13 C16 C15 H17 238.3 235.9
C15 C16 C17 O10 8.4 323.1
C15 C16 C17 H16 127.7 81.6
O12 C15 C14 H19 233.3 235.6
C14 C15 C16 H17 209.6 261.7
N4 C14 C15 H20 236.7 238.9
N4 C13 N5 H21 180.0 179.9
O1 C4 C3 H7 126.5 305.4
C3 C4 O1 H8 120.4 120.0
C3 C4 O1 H9 239.6 240.0
C4 O1 P O6 16.9 65.0
C4 O1 P O7 136.1 185.0
H8 C4 O1 H9 119.2 120.0
N5 C13 N4 H21 180.0 180.1
C13 N4 C14 H20 8.4 144.0
N4 C14 C15 H19 40.1 359.6
C15 C14 N4 H20 122.8 121.0
O16 P2 O13 O17 228.6 236.5
O13 P2 O17 H18 229.6 180.0
P2 O13 C16 H17 271.6 235.9
O16 P2 O17 O13 130.4 123.6
O12 P2 O17 O13 251.3 247.2
C16 O13 P2 O17 216.9 221.0
O16 P2 O13 C16 85.5 97.5
O12 P2 O13 C16 336.3 339.2
C15 C16 O13 H17 120.6 124.4
O17 P2 O13 C16 216.9 221.0
O13 C16 C17 O10 257.8 205.9
O13 C16 C17 H16 17.1 324.4
C18 C17 C16 O10 240.3 241.5
C16 C17 C18 H14 282.7 60.5
C16 C17 C18 H15 162.4 300.5
C18 C17 C16 H16 121.0 123.0
O10 C17 C16 H16 240.7 241.5
P O1 C4 H8 9.0 60.0
P O1 C4 H9 249.8 300.0
O6 P O1 O7 240.8 240.0
O1 P O6 H10 240.1 60.0
O1 P O7 H11 119.2 180.0
O11 C18 C17 H14 119.9 119.9
O11 C18 C17 H15 240.1 239.9
C16 C17 C18 O10 116.8 114.0
C16 C17 C18 H16 238.9 236.9
O10 C17 C18 H16 122.1 122.8
H14 C18 C17 H15 120.3 119.9
O10 C14 C15 H19 283.4 240.1
C15 C14 O10 H20 241.1 240.6
C14 O10 C17 H16 260.8 281.3
O1 P O6 O7 121.2 120.0
O6 P O7 H11 237.6 300.0
O1 P O7 O6 241.6 240.0
O7 P O6 H10 118.9 300.0
C15 C14 O10 C17 321.0 333.6
C16 C17 O10 H16 118.3 118.6
O10 C17 C18 H14 165.9 306.4
O10 C17 C18 H15 45.6 186.5
C18 C17 O10 H16 238.9 237.1
C7 C5 H1 C6 180.0 180.1
H1 C5 C6 H2 359.7 0.0
H2 C6 C5 H1 359.7 0.0
H3 N1 C8 N 181.0 180.0
N C H4 C1 120.7 122.9
N C H4 O 235.4 237.1
C1 C H4 O 114.8 114.1
H4 C C1 C2 224.6 278.4
H4 C C1 H5 103.0 160.1
H4 C O C3 116.3 78.6
O2 C1 H5 C2 242.2 236.4
H5 C1 C O 220.4 278.8
C C1 H5 C2 118.1 112.8
H5 C1 C H4 103.0 160.1
H5 C1 C2 O3 266.3 216.0
H5 C1 C2 C3 149.0 97.3
H5 C1 C2 H12 32.1 338.6
H6 O2 C1 C2 293.2 174.1
H6 O2 C1 H5 55.1 297.8
O C3 H7 C4 240.6 239.0
H7 C3 C4 O1 126.5 305.4
H7 C3 C4 H8 246.9 65.4
H7 C3 C4 H9 6.1 185.4
C3 C4 H8 O1 237.6 240.0
H8 C4 C3 H7 246.9 65.4
C3 C4 H8 H9 118.8 120.0
H8 C4 O1 P 9.0 60.0
O1 C4 H8 H9 241.2 240.0
C3 C4 H9 O1 122.4 120.0
H9 C4 C3 H7 6.1 185.4
C3 C4 H9 H8 241.2 240.0
H9 C4 O1 P 249.8 300.0
O1 C4 H9 H8 118.8 120.0
H10 O6 P O7 118.9 300.0
C1 C2 H12 O3 233.2 237.4
C1 C2 H12 C3 112.2 114.8
H12 C2 C1 H5 32.1 338.6
H12 C2 C3 H7 206.6 236.2
H13 O15 P1 O11 238.5 59.9
O11 C18 H14 C17 240.7 240.1
O11 C18 H14 H15 120.4 120.1
H14 C18 C17 O10 165.9 306.4
C17 C18 H14 H15 239.6 240.0
H14 C18 C17 H16 43.8 183.6
O11 C18 H15 C17 119.2 120.1
O11 C18 H15 H14 239.6 240.0
H15 C18 C17 O10 45.6 186.5
C17 C18 H15 H14 120.4 119.9
H15 C18 C17 H16 283.5 63.7
C16 C17 H16 O10 244.1 246.0
C18 C17 H16 O10 121.8 122.9
H16 C17 C18 H14 43.8 183.6
H16 C17 C18 H15 283.5 63.7
H17 C16 O13 P2 271.6 235.9
H17 C16 C17 O10 128.7 82.6
H17 C16 C17 H16 248.0 201.0
H18 O17 P2 O13 229.6 180.0
O12 C15 H19 C14 124.9 121.9
H19 C15 C16 H17 328.6 23.9
H19 C15 C14 O10 283.4 240.1
H19 C15 C14 H20 163.3 120.7
C15 C14 H20 O10 114.1 117.9
H20 C14 C15 H19 163.3 120.7