PDB Chemical Component UBZ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for UBZ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C2 C1 1.391 1.383
C1 C6 1.391 1.382
C1 H1 1.080 1.080
C2 C3 1.391 1.382
C2 H2 1.080 1.080
C3 C4 1.383 1.382
C3 H3 1.080 1.080
C4 C7 1.510 1.507
C4 C5 1.395 1.383
C6 C5 1.386 1.382
C5 H5 1.080 1.080
C6 H6 1.080 1.081
C7 O8 1.424 1.452
C7 H7 1.100 1.090
C7 H7A 1.100 1.090
O8 C9 1.422 1.347
C9 O21 1.235 1.215
C9 N10 1.318 1.348
N10 C11 1.433 1.465
N10 HN10 1.000 0.970
C11 P12 1.789 1.822
C11 H11 1.100 1.090
C11 H11A 1.100 1.090
O22 P12 1.524 1.481
O23 P12 1.492 1.610
P12 N13 1.666 1.682
N13 C14 1.463 1.469
N13 HN13 1.000 1.009
C15 C14 1.501 1.507
C14 C20 1.527 1.530
C14 H14 1.100 1.090
N16 C15 1.342 1.348
C15 O24 1.238 1.212
C17 N16 1.469 1.465
N16 HN16 1.000 0.970
C18 C17 1.495 1.506
C17 C25 1.510 1.529
C17 H17 1.100 1.091
O32 C18 1.258 1.208
O19 C18 1.234 1.343
O19 HO19 0.950 0.967
C20 C21 1.534 1.530
C20 H20 1.101 1.090
C20 H20A 1.100 1.090
C23 C21 1.528 1.530
C21 C22 1.513 1.530
C21 H21 1.100 1.090
C22 H22 1.099 1.090
C22 H22A 1.100 1.090
C22 H22B 1.100 1.090
C23 H23 1.100 1.090
C23 H23A 1.100 1.090
C23 H23B 1.100 1.090
O23 HO23 0.950 0.967
C25 C26 1.472 1.530
C25 H25 1.100 1.089
C25 H25A 1.100 1.090
C26 H26 1.100 1.090
C26 H26A 1.100 1.090
C26 H26B 1.100 1.090

Bond Angles for UBZ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C6 118.8 120.0
C2 C1 H1 120.6 120.0
C1 C2 H2 119.4 120.0
C6 C1 H1 120.6 120.0
C1 C6 C5 120.2 120.0
C1 C6 H6 119.9 120.0
C2 C3 C4 119.7 120.0
C2 C3 H3 120.1 120.0
C4 C3 H3 120.2 120.0
C3 C4 C7 118.9 120.0
C3 C4 C5 119.5 120.0
C4 C7 O8 120.6 109.5
C4 C7 H7 105.9 109.5
C4 C7 H7A 105.9 109.4
C4 C5 H5 119.6 120.0
C6 C5 H5 119.7 120.0
C5 C6 H6 119.9 120.0
O8 C7 H7 105.9 109.5
O8 C7 H7A 105.9 109.5
C7 O8 C9 116.2 117.0
H7 C7 H7A 112.8 109.5
O8 C9 O21 120.1 120.0
O8 C9 N10 114.8 119.9
O21 C9 N10 125.1 120.1
C9 N10 C11 122.1 120.0
C9 N10 HN10 119.0 120.0
C11 N10 HN10 118.9 120.0
N10 C11 P12 113.6 109.5
N10 C11 H11 108.1 109.4
N10 C11 H11A 108.1 109.4
P12 C11 H11 108.1 109.5
P12 C11 H11A 108.1 109.5
C11 P12 N13 102.1 109.5
H11 C11 H11A 110.8 109.5
O22 P12 N13 107.5 109.4
O23 P12 N13 112.8 109.5
P12 N13 C14 122.1 111.0
P12 N13 HN13 105.4 111.0
C14 N13 HN13 105.5 111.0
N13 C14 C20 107.0 109.5
N13 C14 H14 108.9 109.5
C15 C14 C20 108.5 109.5
C15 C14 H14 107.5 109.5
C20 C14 H14 112.8 109.4
C14 C20 C21 114.4 109.5
C14 C20 H20 107.9 109.5
C14 C20 H20A 107.9 109.5
C17 N16 HN16 120.7 120.0
C18 C17 C25 116.7 109.5
C18 C17 H17 102.7 109.5
C25 C17 H17 104.1 109.4
C17 C25 C26 107.4 109.5
C17 C25 H25 110.2 109.5
C17 C25 H25A 110.2 109.5
C21 C20 H20 107.9 109.4
C21 C20 H20A 107.9 109.4
C20 C21 C22 110.0 109.5
C20 C21 H21 107.7 109.4
H20 C20 H20A 111.0 109.5
C23 C21 H21 106.6 109.4
C22 C21 H21 109.1 109.4
C21 C22 H22 109.5 109.4
C21 C22 H22A 109.5 109.5
C21 C22 H22B 109.5 109.4
H22 C22 H22A 109.5 109.5
H22 C22 H22B 109.4 109.5
H22A C22 H22B 109.5 109.5
H23 C23 H23A 109.5 109.5
H23 C23 H23B 109.4 109.4
H23A C23 H23B 109.5 109.5
C26 C25 H25 110.2 109.4
C26 C25 H25A 110.2 109.4
C25 C26 H26 109.5 109.4
C25 C26 H26A 109.5 109.5
C25 C26 H26B 109.5 109.5
H25 C25 H25A 108.7 109.4
H26 C26 H26A 109.5 109.5
H26 C26 H26B 109.4 109.4
H26A C26 H26B 109.5 109.4

Torsion Angles for UBZ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 C1 C2 H1 180.0 180.1
C2 C1 C6 C5 0.5 360.0
C2 C1 C6 H6 180.5 179.9
C1 C2 C3 C4 358.7 360.0
C1 C2 C3 H3 178.7 179.8
C2 C1 C6 H1 180.0 179.9
C6 C1 C2 H2 180.5 180.0
C1 C6 C5 H5 179.4 180.0
C5 C6 C1 H6 180.0 180.0
C2 C1 H1 C6 180.0 180.1
H1 C1 C2 H2 0.5 359.9
H1 C1 C6 C5 180.5 180.0
H1 C1 C6 H6 0.5 0.0
C4 C3 C2 H3 180.0 180.2
C2 C3 C4 C7 179.9 179.7
C2 C3 C4 C5 1.2 0.0
H2 C2 C1 C6 180.5 180.0
H2 C2 C1 H1 0.5 359.9
H2 C2 C3 C4 178.7 180.0
H2 C2 C3 H3 358.7 359.7
C2 C3 C4 H3 180.0 179.8
C3 C4 C7 O8 90.5 90.0
C3 C4 C7 H7 210.5 210.0
C3 C4 C7 H7A 330.5 330.0
C3 C4 C5 H5 179.7 180.0
C2 C3 H3 C4 180.0 180.2
H3 C3 C4 C7 359.9 360.0
H3 C3 C4 C5 181.2 180.3
C7 C4 C3 H3 359.9 360.0
C3 C4 C7 C5 181.3 180.3
C7 C4 C5 H5 1.1 0.3
O8 C7 C4 H7 240.0 240.0
O8 C7 C4 H7A 120.0 120.0
C4 C7 O8 C9 94.5 180.0
H7 C7 C4 H7A 240.0 240.0
C5 C4 C3 H3 181.2 180.3
C3 C4 C5 C7 178.7 179.7
C6 C5 C4 H5 180.0 179.9
C4 C5 C6 H6 179.4 180.1
C5 C6 C1 H1 180.5 180.0
C1 C6 C5 H6 180.0 180.0
C3 C4 C5 C6 359.7 359.9
C4 C5 C6 H5 180.0 180.1
H5 C5 C6 H6 359.4 0.0
H6 C6 C1 H1 0.5 0.0
C1 C6 H6 C5 180.0 180.0
H6 C6 C5 H5 359.4 0.0
C4 C7 O8 H7 120.0 120.0
C4 C7 O8 H7A 240.0 240.0
H7 C7 O8 H7A 120.0 120.0
C7 O8 C9 O21 357.1 0.0
C7 O8 C9 N10 179.4 180.0
C4 C7 H7 O8 230.8 240.0
C4 C7 H7 H7A 115.4 120.0
O8 C7 H7 H7A 244.6 240.0
H7 C7 O8 C9 334.5 60.0
C4 C7 H7A O8 129.2 120.0
C4 C7 H7A H7 244.6 240.0
O8 C7 H7A H7 115.4 120.0
H7A C7 O8 C9 214.5 300.0
C9 O8 C7 H7 334.5 60.0
C9 O8 C7 H7A 214.5 300.0
O21 C9 O8 N10 177.7 180.0
O8 C9 N10 C11 181.4 180.0
O8 C9 N10 HN10 1.3 359.9
O8 C9 O21 N10 182.6 180.0
O21 C9 N10 C11 3.8 0.1
O21 C9 N10 HN10 183.8 180.0
O8 C9 N10 O21 177.5 180.0
C11 N10 C9 HN10 180.0 180.1
C9 N10 C11 P12 208.1 95.0
C9 N10 C11 H11 328.1 215.0
C9 N10 C11 H11A 88.1 335.0
C9 N10 C11 HN10 180.0 179.9
P12 C11 N10 H11 240.0 240.0
P12 C11 N10 H11A 120.0 120.0
N10 C11 P12 N13 187.7 180.0
H11 C11 N10 H11A 240.0 240.0
C9 N10 HN10 C11 180.0 180.1
HN10 N10 C11 P12 28.1 275.1
HN10 N10 C11 H11 148.1 35.1
HN10 N10 C11 H11A 268.1 155.1
P12 C11 N10 HN10 28.1 275.1
N10 C11 P12 H11 120.0 120.0
N10 C11 P12 H11A 240.0 240.0
H11 C11 P12 H11A 120.0 120.1
O22 P12 C11 N13 114.4 120.0
O23 P12 C11 N13 240.2 240.0
C11 P12 N13 C14 133.9 175.2
C11 P12 N13 HN13 254.0 299.1
H11 C11 N10 HN10 148.1 35.1
N10 C11 H11 P12 236.6 239.9
N10 C11 H11 H11A 118.3 119.9
P12 C11 H11 H11A 241.7 240.0
H11 C11 P12 N13 67.7 60.0
H11A C11 N10 HN10 268.1 155.1
N10 C11 H11A P12 123.4 120.0
N10 C11 H11A H11 241.7 240.1
P12 C11 H11A H11 118.3 120.1
H11A C11 P12 N13 307.7 300.0
O22 P12 C11 H11 182.2 180.0
O22 P12 C11 H11A 62.1 59.9
C11 P12 O22 N13 249.0 240.0
O23 P12 O22 N13 125.2 120.0
O22 P12 N13 C14 16.7 55.2
O22 P12 N13 HN13 136.7 179.2
O23 P12 C11 H11 308.0 300.0
O23 P12 C11 H11A 187.9 179.9
C11 P12 O23 N13 112.9 120.0
O22 P12 O23 N13 237.7 240.0
O23 P12 N13 C14 251.3 295.2
O23 P12 N13 HN13 11.3 59.2
N13 P12 C11 H11 67.7 60.0
N13 P12 C11 H11A 307.7 300.0
C14 N13 P12 HN13 240.0 236.0
P12 N13 C14 C20 159.9 95.0
P12 N13 C14 H14 37.7 335.1
P12 N13 C14 HN13 120.0 124.0
C15 C14 N13 C20 118.9 120.0
C15 C14 N13 H14 241.1 240.0
C20 C14 N13 H14 122.2 120.0
N13 C14 C20 C21 184.1 185.8
N13 C14 C20 H20 304.1 305.8
N13 C14 C20 H20A 64.1 65.8
P12 N13 HN13 C14 229.6 236.0
HN13 N13 C14 C20 39.9 331.1
HN13 N13 C14 H14 277.7 211.1
C15 C14 N13 HN13 158.8 91.1
N13 C14 C15 C20 242.0 240.0
N13 C14 C15 H14 119.8 120.1
C20 C14 C15 H14 237.8 240.0
C15 C14 C20 C21 62.8 65.8
C15 C14 C20 H20 182.8 185.8
C15 C14 C20 H20A 302.8 305.8
C20 C14 N13 HN13 39.9 331.1
N13 C14 C20 H14 240.3 240.0
C15 C14 C20 H14 118.9 120.0
C21 C20 C14 H20 240.0 240.0
C21 C20 C14 H20A 120.0 120.0
C14 C20 C21 C22 193.3 66.9
C14 C20 C21 H21 312.1 306.9
H20 C20 C14 H20A 240.0 240.0
H14 C14 N13 HN13 277.7 211.1
N13 C14 H14 C20 118.6 120.0
C15 C14 H14 C20 240.5 240.0
H14 C14 C20 C21 303.9 305.8
H14 C14 C20 H20 63.8 65.8
H14 C14 C20 H20A 183.8 185.8
N16 C15 C14 H14 205.6 46.2
O24 C15 C14 C20 265.2 106.2
O24 C15 C14 H14 27.4 226.2
C18 C17 N16 HN16 43.6 95.0
C25 C17 C18 H17 246.9 240.0
C18 C17 C25 C26 290.2 175.0
C18 C17 C25 H25 50.3 295.0
C18 C17 C25 H25A 170.2 55.0
C25 C17 N16 HN16 271.2 334.9
C18 C17 C25 H17 112.3 120.0
C26 C25 C17 H25 240.0 240.0
C26 C25 C17 H25A 120.0 120.0
C17 C25 C26 H26 180.0 60.0
C17 C25 C26 H26A 300.0 180.0
C17 C25 C26 H26B 60.0 300.0
H25 C25 C17 H25A 240.0 240.0
H17 C17 N16 HN16 156.9 215.0
C18 C17 H17 C25 238.0 240.0
H17 C17 C25 C26 178.0 55.0
H17 C17 C25 H25 298.0 175.0
H17 C17 C25 H25A 58.0 295.0
O32 C18 C17 C25 123.1 120.0
O32 C18 C17 H17 236.2 240.0
O19 C18 C17 H17 52.1 60.0
C21 C20 C14 H14 303.9 305.8
C14 C20 C21 H20 120.0 120.0
C14 C20 C21 H20A 240.0 239.9
H20 C20 C21 H20A 120.0 119.9
C23 C21 C20 H21 117.1 240.0
C22 C21 C20 H21 241.2 120.0
C20 C21 C22 H22 180.0 184.2
C20 C21 C22 H22A 300.0 304.2
C20 C21 C22 H22B 60.0 64.2
H20 C20 C14 H14 63.8 65.8
C14 C20 H20 C21 236.0 240.0
C14 C20 H20 H20A 118.0 120.1
C21 C20 H20 H20A 242.0 240.1
H20 C20 C21 C22 73.3 306.9
H20 C20 C21 H21 192.1 186.9
H20A C20 C14 H14 183.8 185.8
C14 C20 H20A C21 124.0 120.0
C14 C20 H20A H20 242.0 240.0
C21 C20 H20A H20 118.0 119.9
H20A C20 C21 C22 313.3 186.9
H20A C20 C21 H21 72.1 67.0
C23 C21 C20 H20 309.1 67.0
C23 C21 C20 H20A 189.2 307.0
C20 C21 C23 H21 242.3 120.0
C22 C21 C23 H21 118.7 240.0
C23 C21 C22 H22 304.8 64.1
C23 C21 C22 H22A 64.8 184.2
C23 C21 C22 H22B 184.9 304.1
C22 C21 C20 H20 73.3 306.9
C22 C21 C20 H20A 313.3 186.9
C20 C21 C22 H21 117.9 240.0
C23 C21 C22 H21 242.8 120.0
H22 C22 C21 H22A 240.0 240.0
H22 C22 C21 H22B 120.0 120.0
H22A C22 C21 H22B 240.0 240.0
H21 C21 C20 H20 192.1 186.9
H21 C21 C20 H20A 72.1 67.0
C20 C21 H21 C22 240.6 120.0
H21 C21 C22 H22 62.0 304.2
H21 C21 C22 H22A 182.0 64.2
H21 C21 C22 H22B 302.1 184.2
H22 C22 C21 H21 62.0 304.2
C21 C22 H22 H22A 120.0 120.0
C21 C22 H22 H22B 240.0 240.1
H22A C22 H22 H22B 120.0 120.1
H22A C22 C21 H21 182.0 64.2
C21 C22 H22A H22 240.0 240.0
C21 C22 H22A H22B 120.0 119.9
H22 C22 H22A H22B 240.0 239.9
H22B C22 C21 H21 302.1 184.2
C21 C22 H22B H22 120.0 119.9
C21 C22 H22B H22A 240.0 240.0
H22 C22 H22B H22A 120.0 120.1
H23 C23 C21 H21 297.7 299.9
H23A C23 H23 H23B 120.0 120.0
H23A C23 C21 H21 57.7 60.0
H23 C23 H23A H23B 240.0 240.0
H23B C23 C21 H21 177.7 180.0
H23 C23 H23B H23A 120.0 120.0
HO23 O23 P12 N13 122.3 304.9
C26 C25 C17 H17 178.0 55.0
C17 C25 C26 H25 120.0 120.0
C17 C25 C26 H25A 240.0 239.9
H25 C25 C26 H25A 120.0 119.9
H26 C26 C25 H26A 240.0 240.0
H26 C26 C25 H26B 120.0 120.0
H26A C26 C25 H26B 240.0 240.0
H25 C25 C17 H17 298.0 175.0
C17 C25 H25 C26 241.7 240.0
C17 C25 H25 H25A 120.8 120.1
C26 C25 H25 H25A 239.1 240.1
H25 C25 C26 H26 60.0 300.0
H25 C25 C26 H26A 180.0 60.0
H25 C25 C26 H26B 300.0 180.0
H25A C25 C17 H17 58.0 295.0
C17 C25 H25A C26 118.3 120.1
C17 C25 H25A H25 239.2 240.0
C26 C25 H25A H25 120.9 119.9
H25A C25 C26 H26 300.0 180.1
H25A C25 C26 H26A 60.0 300.1
H25A C25 C26 H26B 180.0 60.1
H26 C26 C25 H25 60.0 300.0
H26 C26 C25 H25A 300.0 180.1
C25 C26 H26 H26A 120.0 120.0
C25 C26 H26 H26B 240.0 240.0
H26A C26 H26 H26B 120.0 120.0
H26A C26 C25 H25 180.0 60.0
H26A C26 C25 H25A 60.0 300.1
C25 C26 H26A H26 240.0 240.0
C25 C26 H26A H26B 120.0 120.0
H26 C26 H26A H26B 240.0 240.0
H26B C26 C25 H25 300.0 180.0
H26B C26 C25 H25A 180.0 60.1
C25 C26 H26B H26 120.0 120.0
C25 C26 H26B H26A 240.0 240.0
H26 C26 H26B H26A 120.0 120.0