PDB Chemical Component UBX
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for UBX
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.391 |
1.382 |
| C1 |
H1 |
1.080 |
1.080 |
| C2 |
H2 |
1.080 |
1.080 |
| C3 |
C2 |
1.393 |
1.382 |
| C3 |
H3 |
1.081 |
1.079 |
| C4 |
C3 |
1.390 |
1.382 |
| C5 |
C4 |
1.395 |
1.382 |
| C5 |
C6 |
1.390 |
1.382 |
| C5 |
H5 |
1.080 |
1.079 |
| C6 |
C1 |
1.389 |
1.383 |
| C6 |
H6 |
1.080 |
1.080 |
| C7 |
C4 |
1.510 |
1.506 |
| C7 |
H7 |
1.100 |
1.091 |
| C7 |
H7A |
1.100 |
1.090 |
| O8 |
C7 |
1.430 |
1.452 |
| C9 |
O8 |
1.449 |
1.347 |
| N10 |
C9 |
1.326 |
1.348 |
| N10 |
HN10 |
1.001 |
0.970 |
| C11 |
N10 |
1.450 |
1.464 |
| C11 |
H11 |
1.100 |
1.091 |
| C11 |
H11A |
1.100 |
1.089 |
| P12 |
C11 |
1.797 |
1.824 |
| P12 |
O21 |
1.503 |
1.480 |
| P12 |
O20 |
1.523 |
1.610 |
| N13 |
P12 |
1.677 |
1.683 |
| N13 |
HN13 |
1.000 |
1.008 |
| C14 |
N13 |
1.463 |
1.469 |
| C14 |
C15 |
1.507 |
1.506 |
| C14 |
H14 |
1.100 |
1.090 |
| C15 |
O23 |
1.226 |
1.214 |
| C15 |
N16 |
1.333 |
1.348 |
| N16 |
C17 |
1.462 |
1.465 |
| C17 |
H17 |
1.100 |
1.090 |
| C17 |
H17A |
1.100 |
1.091 |
| O19 |
C9 |
1.212 |
1.215 |
| O20 |
HO20 |
0.950 |
0.966 |
| C22 |
C14 |
1.528 |
1.531 |
| C22 |
H22 |
1.100 |
1.091 |
| C22 |
H22A |
1.100 |
1.090 |
| C27 |
C22 |
1.534 |
1.530 |
| C27 |
C29 |
1.526 |
1.529 |
| C27 |
H27 |
1.100 |
1.090 |
| C28 |
C27 |
1.526 |
1.530 |
| C28 |
H28 |
1.100 |
1.090 |
| C28 |
H28A |
1.100 |
1.091 |
| C28 |
H28B |
1.100 |
1.090 |
| C29 |
H29 |
1.100 |
1.090 |
| C29 |
H29A |
1.100 |
1.090 |
| C29 |
H29B |
1.100 |
1.090 |
| N16 |
H25 |
1.000 |
0.970 |
| C17 |
H26 |
1.100 |
1.090 |
Bond Angles for UBX
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
C2 |
H2 |
119.9 |
120.0 |
| C6 |
C1 |
H1 |
120.0 |
120.0 |
| C3 |
C2 |
H2 |
119.9 |
120.0 |
| C2 |
C3 |
H3 |
120.1 |
120.0 |
| C4 |
C3 |
H3 |
120.1 |
120.0 |
| C4 |
C5 |
H5 |
120.0 |
120.0 |
| C5 |
C6 |
H6 |
120.1 |
120.0 |
| H7 |
C7 |
H7A |
109.4 |
109.4 |
| O8 |
C7 |
H7 |
109.5 |
109.4 |
| O8 |
C7 |
H7A |
109.5 |
109.5 |
| C11 |
N10 |
HN10 |
117.9 |
120.0 |
| H11 |
C11 |
H11A |
109.6 |
109.5 |
| P12 |
C11 |
H11 |
109.4 |
109.4 |
| P12 |
C11 |
H11A |
109.3 |
109.5 |
| O21 |
P12 |
O20 |
113.3 |
109.5 |
| P12 |
O20 |
HO20 |
109.5 |
114.0 |
| C14 |
N13 |
HN13 |
105.6 |
111.1 |
| C15 |
C14 |
H14 |
107.5 |
109.5 |
| C14 |
C15 |
O23 |
119.4 |
120.0 |
| C14 |
C15 |
N16 |
117.7 |
120.1 |
| C22 |
C14 |
H14 |
113.7 |
109.4 |
| N16 |
C15 |
O23 |
122.9 |
120.0 |
| C15 |
N16 |
C17 |
123.9 |
120.0 |
| C15 |
N16 |
H25 |
118.0 |
119.9 |
| N16 |
C17 |
H17 |
109.5 |
109.5 |
| N16 |
C17 |
H17A |
109.5 |
109.5 |
| C17 |
N16 |
H25 |
118.0 |
120.1 |
| N16 |
C17 |
H26 |
109.5 |
109.4 |
| H17 |
C17 |
H17A |
109.5 |
109.5 |
| H17 |
C17 |
H26 |
109.4 |
109.5 |
| H17A |
C17 |
H26 |
109.5 |
109.4 |
| H22 |
C22 |
H22A |
110.4 |
109.4 |
| C27 |
C22 |
H22 |
108.5 |
109.5 |
| C27 |
C22 |
H22A |
108.5 |
109.5 |
| C29 |
C27 |
H27 |
107.4 |
109.5 |
| C28 |
C27 |
C29 |
110.1 |
109.5 |
| C27 |
C29 |
H29 |
109.5 |
109.5 |
| C27 |
C29 |
H29A |
109.5 |
109.5 |
| C27 |
C29 |
H29B |
109.5 |
109.5 |
| C28 |
C27 |
H27 |
109.4 |
109.5 |
| H28 |
C28 |
H28A |
109.4 |
109.5 |
| H28 |
C28 |
H28B |
109.5 |
109.5 |
| H28A |
C28 |
H28B |
109.5 |
109.4 |
| H29 |
C29 |
H29A |
109.5 |
109.4 |
| H29 |
C29 |
H29B |
109.5 |
109.5 |
| H29A |
C29 |
H29B |
109.5 |
109.4 |
Torsion Angles for UBX
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
| C1 |
C2 |
C3 |
H3 |
179.7 |
180.0 |
| H1 |
C1 |
C2 |
H2 |
0.1 |
360.0 |
| H2 |
C2 |
C3 |
H3 |
359.7 |
0.1 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.2 |
| H3 |
C3 |
C2 |
H2 |
359.7 |
0.1 |
| C4 |
C3 |
C2 |
H2 |
179.7 |
180.3 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
179.8 |
| C5 |
C4 |
C3 |
H3 |
180.5 |
179.6 |
| C4 |
C5 |
C6 |
H6 |
180.4 |
179.7 |
| C5 |
C6 |
C1 |
H1 |
179.8 |
180.0 |
| H5 |
C5 |
C6 |
H6 |
0.4 |
0.3 |
| C6 |
C1 |
C2 |
H2 |
180.2 |
180.0 |
| H6 |
C6 |
C1 |
H1 |
359.8 |
0.0 |
| C7 |
C4 |
C3 |
H3 |
359.9 |
0.3 |
| C7 |
C4 |
C5 |
H5 |
0.1 |
359.4 |
| O8 |
C7 |
H7 |
H7A |
240.0 |
240.0 |
| O8 |
C7 |
H7A |
H7 |
120.0 |
119.9 |
| H7 |
C7 |
O8 |
H7A |
120.0 |
119.9 |
| C9 |
O8 |
C7 |
H7 |
12.7 |
60.0 |
| C9 |
O8 |
C7 |
H7A |
252.7 |
300.1 |
| H11 |
C11 |
N10 |
HN10 |
89.8 |
35.0 |
| P12 |
C11 |
H11 |
H11A |
240.1 |
240.0 |
| H11A |
C11 |
N10 |
HN10 |
209.8 |
155.0 |
| P12 |
C11 |
H11A |
H11 |
119.9 |
120.0 |
| P12 |
C11 |
N10 |
HN10 |
329.7 |
275.0 |
| H11 |
C11 |
P12 |
H11A |
120.0 |
120.0 |
| O21 |
P12 |
C11 |
H11 |
286.7 |
300.0 |
| O21 |
P12 |
C11 |
H11A |
166.7 |
180.1 |
| O21 |
P12 |
O20 |
HO20 |
360.0 |
180.1 |
| O20 |
P12 |
C11 |
H11 |
159.9 |
180.0 |
| O20 |
P12 |
C11 |
H11A |
39.9 |
60.1 |
| N13 |
P12 |
C11 |
H11 |
44.9 |
60.0 |
| N13 |
P12 |
C11 |
H11A |
284.9 |
300.0 |
| N13 |
P12 |
O20 |
HO20 |
236.6 |
60.0 |
| C15 |
C14 |
N13 |
HN13 |
161.4 |
141.0 |
| C22 |
C14 |
C15 |
H14 |
236.8 |
240.1 |
| N16 |
C15 |
C14 |
O23 |
179.4 |
180.0 |
| C14 |
C15 |
N16 |
C17 |
181.0 |
180.0 |
| C14 |
C15 |
N16 |
H25 |
1.1 |
0.0 |
| H14 |
C14 |
N13 |
HN13 |
281.0 |
261.1 |
| H14 |
C14 |
C15 |
O23 |
22.6 |
240.0 |
| H14 |
C14 |
C15 |
N16 |
202.0 |
60.0 |
| O23 |
C15 |
C14 |
H14 |
22.6 |
240.0 |
| C14 |
C15 |
O23 |
N16 |
179.3 |
180.0 |
| O23 |
C15 |
N16 |
C17 |
0.4 |
360.0 |
| O23 |
C15 |
N16 |
H25 |
180.4 |
180.0 |
| N16 |
C15 |
C14 |
H14 |
202.0 |
60.0 |
| C14 |
C15 |
N16 |
O23 |
180.6 |
180.0 |
| C15 |
N16 |
C17 |
H17 |
180.0 |
300.0 |
| C15 |
N16 |
C17 |
H17A |
300.0 |
60.0 |
| C17 |
N16 |
C15 |
H25 |
180.0 |
180.0 |
| C15 |
N16 |
C17 |
H26 |
60.0 |
180.0 |
| C17 |
N16 |
C15 |
O23 |
0.4 |
360.0 |
| C15 |
N16 |
C17 |
H25 |
180.0 |
180.0 |
| H17 |
C17 |
N16 |
H17A |
240.0 |
240.0 |
| H17 |
C17 |
N16 |
H26 |
120.0 |
120.1 |
| H17A |
C17 |
N16 |
H26 |
240.0 |
240.1 |
| N16 |
C17 |
H17 |
H17A |
120.0 |
120.0 |
| H17 |
C17 |
N16 |
H25 |
360.0 |
120.0 |
| N16 |
C17 |
H17 |
H26 |
240.0 |
240.0 |
| H17A |
C17 |
H17 |
H26 |
120.0 |
120.0 |
| N16 |
C17 |
H17A |
H17 |
239.9 |
240.0 |
| H17A |
C17 |
N16 |
H25 |
120.0 |
240.0 |
| N16 |
C17 |
H17A |
H26 |
120.0 |
119.9 |
| H17 |
C17 |
H17A |
H26 |
240.1 |
240.0 |
| C22 |
C14 |
N13 |
HN13 |
44.1 |
21.0 |
| C15 |
C14 |
C22 |
H14 |
119.3 |
120.0 |
| C22 |
C14 |
C15 |
O23 |
259.4 |
120.0 |
| H22 |
C22 |
C14 |
H14 |
64.5 |
175.0 |
| C27 |
C22 |
H22 |
H22A |
241.2 |
240.0 |
| H22A |
C22 |
C14 |
H14 |
184.5 |
294.9 |
| C27 |
C22 |
H22A |
H22 |
118.8 |
120.1 |
| C27 |
C22 |
C14 |
H14 |
304.5 |
55.0 |
| H22 |
C22 |
C27 |
H22A |
120.0 |
120.0 |
| C29 |
C27 |
C22 |
H22 |
310.1 |
175.0 |
| C29 |
C27 |
C22 |
H22A |
190.1 |
55.0 |
| C28 |
C27 |
C29 |
H27 |
119.0 |
239.9 |
| H29 |
C29 |
C27 |
H29A |
240.0 |
240.1 |
| H29 |
C29 |
C27 |
H29B |
120.0 |
120.1 |
| H29A |
C29 |
C27 |
H29B |
240.0 |
240.0 |
| H27 |
C27 |
C22 |
H22 |
192.5 |
295.0 |
| H27 |
C27 |
C22 |
H22A |
72.5 |
175.0 |
| C28 |
C27 |
H27 |
C29 |
240.6 |
120.0 |
| H27 |
C27 |
C29 |
H29 |
297.3 |
180.1 |
| H27 |
C27 |
C29 |
H29A |
57.3 |
300.0 |
| H27 |
C27 |
C29 |
H29B |
177.3 |
60.0 |
| C28 |
C27 |
C22 |
H22 |
73.6 |
55.0 |
| C28 |
C27 |
C22 |
H22A |
313.6 |
295.0 |
| C29 |
C27 |
C28 |
H27 |
242.2 |
120.1 |
| C28 |
C27 |
C29 |
H29 |
56.3 |
60.0 |
| C28 |
C27 |
C29 |
H29A |
176.3 |
180.0 |
| C28 |
C27 |
C29 |
H29B |
296.3 |
299.9 |
| H28 |
C28 |
C27 |
C29 |
304.8 |
300.0 |
| H28 |
C28 |
C27 |
H27 |
62.6 |
180.0 |
| H28A |
C28 |
H28 |
H28B |
120.0 |
119.9 |
| H28A |
C28 |
C27 |
C29 |
64.8 |
60.0 |
| H28A |
C28 |
C27 |
H27 |
182.5 |
300.0 |
| H28 |
C28 |
H28A |
H28B |
240.0 |
240.0 |
| H28B |
C28 |
C27 |
C29 |
184.8 |
180.0 |
| H28B |
C28 |
C27 |
H27 |
302.5 |
59.9 |
| H28 |
C28 |
H28B |
H28A |
120.0 |
120.0 |
| H29 |
C29 |
C27 |
H27 |
297.3 |
180.1 |
| C27 |
C29 |
H29 |
H29A |
120.0 |
120.0 |
| C27 |
C29 |
H29 |
H29B |
240.0 |
239.9 |
| H29A |
C29 |
H29 |
H29B |
120.0 |
119.9 |
| H29A |
C29 |
C27 |
H27 |
57.3 |
300.0 |
| C27 |
C29 |
H29A |
H29 |
240.0 |
240.0 |
| C27 |
C29 |
H29A |
H29B |
120.0 |
120.0 |
| H29 |
C29 |
H29A |
H29B |
240.0 |
240.0 |
| H29B |
C29 |
C27 |
H27 |
177.3 |
60.0 |
| C27 |
C29 |
H29B |
H29 |
120.0 |
120.1 |
| C27 |
C29 |
H29B |
H29A |
240.0 |
240.0 |
| H29 |
C29 |
H29B |
H29A |
120.0 |
119.9 |
| H25 |
N16 |
C15 |
O23 |
180.4 |
180.0 |
| C15 |
N16 |
H25 |
C17 |
180.0 |
180.0 |
| H25 |
N16 |
C17 |
H17 |
360.0 |
120.0 |
| H25 |
N16 |
C17 |
H17A |
120.0 |
240.0 |
| H25 |
N16 |
C17 |
H26 |
240.0 |
359.9 |
| N16 |
C17 |
H26 |
H17 |
120.0 |
120.1 |
| N16 |
C17 |
H26 |
H17A |
240.0 |
240.0 |
| H26 |
C17 |
N16 |
H25 |
240.0 |
359.9 |
| H17 |
C17 |
H26 |
H17A |
120.0 |
120.0 |