PDB Chemical Component UBV
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for UBV
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C |
C29 |
1.527 |
1.530 |
| C |
H |
1.100 |
1.090 |
| C |
HA |
1.100 |
1.090 |
| C |
HB |
1.100 |
1.090 |
| C6 |
C1 |
1.392 |
1.382 |
| C1 |
C2 |
1.391 |
1.383 |
| C1 |
H1 |
1.080 |
1.080 |
| C3 |
C2 |
1.392 |
1.381 |
| C2 |
H2 |
1.080 |
1.080 |
| C4 |
C3 |
1.387 |
1.382 |
| C3 |
H3 |
1.080 |
1.080 |
| C5 |
C4 |
1.392 |
1.382 |
| C7 |
C4 |
1.507 |
1.508 |
| C5 |
C6 |
1.390 |
1.383 |
| C5 |
H5 |
1.080 |
1.080 |
| C6 |
H6 |
1.080 |
1.080 |
| O8 |
C7 |
1.424 |
1.452 |
| C7 |
H7 |
1.100 |
1.090 |
| C7 |
H7A |
1.100 |
1.090 |
| C9 |
O8 |
1.443 |
1.347 |
| N10 |
C9 |
1.319 |
1.348 |
| O21 |
C9 |
1.224 |
1.214 |
| C11 |
N10 |
1.443 |
1.465 |
| N10 |
HN10 |
1.001 |
0.970 |
| P12 |
C11 |
1.800 |
1.823 |
| C11 |
H11 |
1.100 |
1.091 |
| C11 |
H11A |
1.100 |
1.090 |
| N13 |
P12 |
1.726 |
1.683 |
| P12 |
O22 |
1.501 |
1.480 |
| P12 |
O23 |
1.499 |
1.610 |
| C14 |
N13 |
1.450 |
1.469 |
| N13 |
HN13 |
1.000 |
1.009 |
| C24 |
C14 |
1.517 |
1.530 |
| C14 |
C15 |
1.510 |
1.506 |
| C14 |
H14 |
1.100 |
1.090 |
| C15 |
O28 |
1.226 |
1.213 |
| C15 |
N16 |
1.333 |
1.348 |
| N16 |
C17 |
1.460 |
1.466 |
| N16 |
HN16 |
1.000 |
0.970 |
| C29 |
C17 |
1.539 |
1.530 |
| C17 |
C18 |
1.506 |
1.508 |
| C17 |
H17 |
1.100 |
1.089 |
| C18 |
O19 |
1.257 |
1.208 |
| C18 |
O20 |
1.247 |
1.341 |
| O20 |
HO20 |
0.950 |
0.967 |
| O23 |
HO23 |
0.950 |
0.967 |
| C25 |
C24 |
1.523 |
1.529 |
| C24 |
H24 |
1.099 |
1.090 |
| C24 |
H24A |
1.100 |
1.090 |
| C27 |
C25 |
1.530 |
1.530 |
| C25 |
C26 |
1.525 |
1.530 |
| C25 |
H25 |
1.100 |
1.090 |
| C26 |
H26 |
1.100 |
1.090 |
| C26 |
H26A |
1.100 |
1.090 |
| C26 |
H26B |
1.100 |
1.090 |
| C27 |
H27 |
1.100 |
1.090 |
| C27 |
H27A |
1.100 |
1.090 |
| C27 |
H27B |
1.100 |
1.090 |
| C30 |
C29 |
1.527 |
1.530 |
| C29 |
H29 |
1.100 |
1.090 |
| C31 |
C30 |
1.517 |
1.530 |
| C30 |
H30 |
1.099 |
1.091 |
| C30 |
H30A |
1.100 |
1.089 |
| C31 |
H31 |
1.100 |
1.090 |
| C31 |
H31A |
1.100 |
1.090 |
| C31 |
H31B |
1.100 |
1.090 |
Bond Angles for UBV
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C |
C29 |
H29 |
108.0 |
109.5 |
| H |
C |
HA |
109.5 |
109.5 |
| H |
C |
HB |
109.5 |
109.5 |
| HA |
C |
HB |
109.5 |
109.4 |
| C6 |
C1 |
H1 |
120.0 |
120.0 |
| C1 |
C2 |
H2 |
120.0 |
119.9 |
| C3 |
C2 |
H2 |
120.0 |
120.0 |
| C2 |
C3 |
H3 |
120.0 |
120.0 |
| C4 |
C3 |
H3 |
120.1 |
120.0 |
| C4 |
C5 |
H5 |
120.1 |
120.0 |
| C5 |
C6 |
H6 |
120.0 |
120.0 |
| O8 |
C7 |
H7 |
109.4 |
109.5 |
| O8 |
C7 |
H7A |
109.4 |
109.5 |
| H7 |
C7 |
H7A |
109.5 |
109.5 |
| C11 |
N10 |
HN10 |
117.9 |
120.0 |
| P12 |
C11 |
H11 |
109.1 |
109.5 |
| P12 |
C11 |
H11A |
109.1 |
109.5 |
| H11 |
C11 |
H11A |
109.8 |
109.4 |
| O22 |
P12 |
O23 |
114.6 |
109.4 |
| P12 |
O23 |
HO23 |
109.5 |
114.0 |
| C14 |
N13 |
HN13 |
105.8 |
111.0 |
| C24 |
C14 |
H14 |
112.2 |
109.5 |
| C15 |
C14 |
H14 |
105.3 |
109.5 |
| C14 |
C15 |
O28 |
120.7 |
120.0 |
| C14 |
C15 |
N16 |
115.9 |
120.0 |
| O28 |
C15 |
N16 |
123.4 |
120.0 |
| C15 |
N16 |
C17 |
122.3 |
120.0 |
| C15 |
N16 |
HN16 |
118.9 |
120.0 |
| C17 |
N16 |
HN16 |
118.9 |
120.0 |
| N16 |
C17 |
C18 |
110.8 |
109.5 |
| N16 |
C17 |
H17 |
108.4 |
109.5 |
| C29 |
C17 |
H17 |
108.3 |
109.5 |
| C18 |
C17 |
H17 |
107.9 |
109.5 |
| C17 |
C18 |
O19 |
120.0 |
120.0 |
| C17 |
C18 |
O20 |
117.4 |
120.0 |
| O19 |
C18 |
O20 |
122.6 |
120.0 |
| C18 |
O20 |
HO20 |
109.5 |
117.0 |
| C25 |
C24 |
H24 |
107.9 |
109.5 |
| C25 |
C24 |
H24A |
107.9 |
109.5 |
| H24 |
C24 |
H24A |
111.0 |
109.4 |
| C27 |
C25 |
H25 |
108.0 |
109.4 |
| C26 |
C25 |
H25 |
106.6 |
109.4 |
| C25 |
C26 |
H26 |
109.5 |
109.5 |
| C25 |
C26 |
H26A |
109.5 |
109.5 |
| C25 |
C26 |
H26B |
109.4 |
109.5 |
| H26 |
C26 |
H26A |
109.5 |
109.5 |
| H26 |
C26 |
H26B |
109.5 |
109.5 |
| H26A |
C26 |
H26B |
109.5 |
109.5 |
| H27 |
C27 |
H27A |
109.5 |
109.5 |
| H27 |
C27 |
H27B |
109.5 |
109.5 |
| H27A |
C27 |
H27B |
109.4 |
109.5 |
| C30 |
C29 |
H29 |
106.0 |
109.5 |
| C31 |
C30 |
H30 |
108.8 |
109.4 |
| C31 |
C30 |
H30A |
108.8 |
109.5 |
| H30 |
C30 |
H30A |
110.1 |
109.5 |
| H31 |
C31 |
H31A |
109.5 |
109.5 |
| H31 |
C31 |
H31B |
109.5 |
109.4 |
| H31A |
C31 |
H31B |
109.5 |
109.5 |
Torsion Angles for UBV
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C |
C29 |
C17 |
H17 |
50.4 |
185.0 |
| C30 |
C29 |
C |
H29 |
116.0 |
120.0 |
| H |
C |
C29 |
H29 |
295.8 |
60.0 |
| HA |
C |
H |
HB |
120.0 |
119.9 |
| HA |
C |
C29 |
H29 |
55.8 |
180.0 |
| H |
C |
HA |
HB |
240.0 |
240.0 |
| HB |
C |
C29 |
H29 |
175.8 |
300.0 |
| H |
C |
HB |
HA |
120.0 |
120.0 |
| C6 |
C1 |
C2 |
H2 |
180.3 |
180.0 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
| C1 |
C2 |
C3 |
H3 |
179.9 |
180.0 |
| H1 |
C1 |
C2 |
H2 |
0.3 |
360.0 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.3 |
| H2 |
C2 |
C3 |
H3 |
359.8 |
0.0 |
| C4 |
C3 |
C2 |
H2 |
179.9 |
180.3 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
179.7 |
| H3 |
C3 |
C2 |
H2 |
359.8 |
0.0 |
| C5 |
C4 |
C3 |
H3 |
179.7 |
179.7 |
| C4 |
C5 |
C6 |
H6 |
179.5 |
179.8 |
| C7 |
C4 |
C3 |
H3 |
0.6 |
0.3 |
| C7 |
C4 |
C5 |
H5 |
359.7 |
359.5 |
| C5 |
C6 |
C1 |
H1 |
180.1 |
180.0 |
| H5 |
C5 |
C6 |
H6 |
359.5 |
0.3 |
| H6 |
C6 |
C1 |
H1 |
0.1 |
359.9 |
| H7 |
C7 |
O8 |
H7A |
120.0 |
120.0 |
| O8 |
C7 |
H7 |
H7A |
240.0 |
239.9 |
| O8 |
C7 |
H7A |
H7 |
119.9 |
120.0 |
| C9 |
O8 |
C7 |
H7 |
349.1 |
60.0 |
| C9 |
O8 |
C7 |
H7A |
229.1 |
300.0 |
| P12 |
C11 |
N10 |
HN10 |
25.7 |
275.1 |
| H11 |
C11 |
P12 |
H11A |
120.0 |
120.0 |
| H11 |
C11 |
N10 |
HN10 |
145.8 |
35.1 |
| P12 |
C11 |
H11 |
H11A |
240.5 |
239.9 |
| H11A |
C11 |
N10 |
HN10 |
265.7 |
155.0 |
| P12 |
C11 |
H11A |
H11 |
119.6 |
120.1 |
| N13 |
P12 |
C11 |
H11 |
60.0 |
60.0 |
| N13 |
P12 |
C11 |
H11A |
300.1 |
300.0 |
| N13 |
P12 |
O23 |
HO23 |
234.9 |
60.0 |
| O22 |
P12 |
C11 |
H11 |
301.2 |
300.0 |
| O22 |
P12 |
C11 |
H11A |
181.3 |
180.0 |
| O22 |
P12 |
O23 |
HO23 |
0.0 |
180.0 |
| O23 |
P12 |
C11 |
H11 |
173.3 |
180.0 |
| O23 |
P12 |
C11 |
H11A |
53.3 |
60.0 |
| C24 |
C14 |
N13 |
HN13 |
37.8 |
19.9 |
| C15 |
C14 |
C24 |
H14 |
117.4 |
120.1 |
| C24 |
C14 |
C15 |
N16 |
81.1 |
300.0 |
| C15 |
C14 |
N13 |
HN13 |
159.0 |
139.9 |
| C24 |
C14 |
C15 |
H14 |
238.5 |
239.9 |
| O28 |
C15 |
C14 |
N16 |
180.7 |
180.0 |
| C14 |
C15 |
N16 |
C17 |
179.4 |
180.0 |
| C14 |
C15 |
N16 |
HN16 |
359.4 |
0.1 |
| H14 |
C14 |
N13 |
HN13 |
276.3 |
259.9 |
| H14 |
C14 |
C15 |
O28 |
23.3 |
240.0 |
| H14 |
C14 |
C15 |
N16 |
202.7 |
60.0 |
| O28 |
C15 |
C14 |
H14 |
23.3 |
240.0 |
| C14 |
C15 |
O28 |
N16 |
179.3 |
180.0 |
| O28 |
C15 |
N16 |
C17 |
358.7 |
0.0 |
| O28 |
C15 |
N16 |
HN16 |
178.7 |
180.1 |
| N16 |
C15 |
C14 |
H14 |
202.7 |
60.0 |
| C14 |
C15 |
N16 |
O28 |
180.7 |
180.0 |
| C17 |
N16 |
C15 |
HN16 |
180.0 |
179.9 |
| C15 |
N16 |
C17 |
C18 |
223.8 |
275.0 |
| C15 |
N16 |
C17 |
H17 |
342.0 |
35.0 |
| C15 |
N16 |
C17 |
HN16 |
180.0 |
180.1 |
| C29 |
C17 |
N16 |
H17 |
118.5 |
120.0 |
| C18 |
C17 |
N16 |
H17 |
241.8 |
240.0 |
| N16 |
C17 |
C18 |
O19 |
348.9 |
0.0 |
| N16 |
C17 |
C18 |
O20 |
168.1 |
180.0 |
| C15 |
N16 |
HN16 |
C17 |
180.0 |
179.9 |
| HN16 |
N16 |
C17 |
C18 |
43.8 |
94.9 |
| HN16 |
N16 |
C17 |
H17 |
162.0 |
215.0 |
| C29 |
C17 |
N16 |
HN16 |
280.5 |
335.0 |
| N16 |
C17 |
C29 |
H17 |
241.5 |
240.0 |
| C18 |
C17 |
C29 |
H17 |
118.2 |
120.0 |
| C29 |
C17 |
C18 |
O20 |
291.1 |
300.0 |
| C18 |
C17 |
N16 |
HN16 |
43.8 |
94.9 |
| N16 |
C17 |
C18 |
H17 |
118.5 |
120.0 |
| C29 |
C17 |
C18 |
H17 |
241.5 |
240.0 |
| O19 |
C18 |
C17 |
O20 |
180.8 |
180.0 |
| C17 |
C18 |
O20 |
HO20 |
180.8 |
180.0 |
| H17 |
C17 |
N16 |
HN16 |
162.0 |
215.0 |
| N16 |
C17 |
H17 |
C18 |
239.9 |
240.0 |
| H17 |
C17 |
C18 |
O19 |
230.4 |
240.0 |
| H17 |
C17 |
C18 |
O20 |
49.6 |
60.0 |
| O19 |
C18 |
C17 |
H17 |
230.4 |
240.0 |
| C17 |
C18 |
O19 |
O20 |
179.1 |
180.0 |
| O19 |
C18 |
O20 |
HO20 |
360.0 |
360.0 |
| O20 |
C18 |
C17 |
H17 |
49.6 |
60.0 |
| C17 |
C18 |
O20 |
O19 |
180.9 |
180.0 |
| C25 |
C24 |
C14 |
H14 |
304.1 |
54.1 |
| H24 |
C24 |
C25 |
H24A |
120.0 |
120.0 |
| H24 |
C24 |
C14 |
H14 |
64.2 |
174.1 |
| C25 |
C24 |
H24 |
H24A |
242.0 |
240.0 |
| H24A |
C24 |
C14 |
H14 |
184.1 |
294.1 |
| C25 |
C24 |
H24A |
H24 |
118.0 |
120.0 |
| C27 |
C25 |
C24 |
H24 |
70.4 |
174.3 |
| C27 |
C25 |
C24 |
H24A |
310.4 |
54.4 |
| C26 |
C25 |
C27 |
H25 |
242.9 |
240.1 |
| C27 |
C25 |
C26 |
H26 |
56.4 |
300.0 |
| C27 |
C25 |
C26 |
H26A |
176.4 |
60.0 |
| C27 |
C25 |
C26 |
H26B |
296.4 |
180.0 |
| C26 |
C25 |
C24 |
H24 |
305.6 |
54.4 |
| C26 |
C25 |
C24 |
H24A |
185.7 |
294.4 |
| C27 |
C25 |
C26 |
H25 |
117.9 |
119.9 |
| H26 |
C26 |
C25 |
H26A |
240.0 |
240.0 |
| H26 |
C26 |
C25 |
H26B |
120.0 |
120.0 |
| H26A |
C26 |
C25 |
H26B |
240.0 |
240.0 |
| H25 |
C25 |
C24 |
H24 |
188.5 |
294.3 |
| H25 |
C25 |
C24 |
H24A |
68.5 |
174.4 |
| H25 |
C25 |
C26 |
H26 |
298.5 |
180.0 |
| H25 |
C25 |
C26 |
H26A |
58.5 |
300.0 |
| H25 |
C25 |
C26 |
H26B |
178.5 |
60.0 |
| H26 |
C26 |
C25 |
H25 |
298.5 |
180.0 |
| C25 |
C26 |
H26 |
H26A |
120.0 |
120.0 |
| C25 |
C26 |
H26 |
H26B |
240.0 |
240.0 |
| H26A |
C26 |
H26 |
H26B |
120.0 |
120.0 |
| H26A |
C26 |
C25 |
H25 |
58.5 |
300.0 |
| C25 |
C26 |
H26A |
H26 |
240.0 |
240.0 |
| C25 |
C26 |
H26A |
H26B |
120.0 |
120.0 |
| H26 |
C26 |
H26A |
H26B |
240.0 |
240.0 |
| H26B |
C26 |
C25 |
H25 |
178.5 |
60.0 |
| C25 |
C26 |
H26B |
H26 |
120.0 |
120.0 |
| C25 |
C26 |
H26B |
H26A |
240.0 |
240.0 |
| H26 |
C26 |
H26B |
H26A |
120.0 |
120.0 |
| H27 |
C27 |
C25 |
H25 |
61.4 |
179.9 |
| H27A |
C27 |
H27 |
H27B |
120.0 |
120.0 |
| H27A |
C27 |
C25 |
H25 |
181.5 |
299.9 |
| H27 |
C27 |
H27A |
H27B |
240.0 |
240.0 |
| H27B |
C27 |
C25 |
H25 |
301.4 |
59.9 |
| H27 |
C27 |
H27B |
H27A |
120.0 |
120.0 |
| C |
C29 |
C30 |
H29 |
242.7 |
240.0 |
| C30 |
C29 |
C17 |
H17 |
177.5 |
305.0 |
| H29 |
C29 |
C17 |
H17 |
293.2 |
65.0 |
| C31 |
C30 |
C29 |
H29 |
54.0 |
55.0 |
| H30 |
C30 |
C31 |
H30A |
120.0 |
120.0 |
| H30 |
C30 |
C29 |
H29 |
174.0 |
174.9 |
| C31 |
C30 |
H30 |
H30A |
240.8 |
240.0 |
| H30A |
C30 |
C29 |
H29 |
294.0 |
295.0 |
| C31 |
C30 |
H30A |
H30 |
119.2 |
120.0 |
| H31 |
C31 |
C30 |
H30 |
60.0 |
180.0 |
| H31 |
C31 |
C30 |
H30A |
300.0 |
60.0 |
| H31A |
C31 |
H31 |
H31B |
120.0 |
120.0 |
| H31A |
C31 |
C30 |
H30 |
180.0 |
300.0 |
| H31A |
C31 |
C30 |
H30A |
60.0 |
180.0 |
| H31 |
C31 |
H31A |
H31B |
240.0 |
240.1 |
| H31B |
C31 |
C30 |
H30 |
300.0 |
60.0 |
| H31B |
C31 |
C30 |
H30A |
180.0 |
300.0 |
| H31 |
C31 |
H31B |
H31A |
120.0 |
120.0 |