PDB Chemical Component UBU

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for UBU

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C23 C1 1.390 1.382
C1 C2 1.512 1.507
C1 C19 1.391 1.382
C2 O3 1.424 1.452
C2 H2 1.100 1.090
C2 H2A 1.100 1.090
O3 C4 1.440 1.347
C4 O26 1.222 1.216
C4 N5 1.324 1.347
N5 C6 1.447 1.464
N5 HN5 1.000 0.970
C6 P7 1.806 1.823
C6 H6 1.100 1.090
C6 H6A 1.100 1.090
O24 P7 1.516 1.481
O8 P7 1.584 1.610
P7 N9 1.674 1.683
O8 HO8 0.950 0.967
N9 C10 1.460 1.468
N9 HN9 1.000 1.009
C11 C10 1.509 1.507
C10 C15 1.524 1.530
C10 H10 1.100 1.090
N12 C11 1.335 1.348
O25 C11 1.226 1.213
C13 N12 1.455 1.465
N12 HN12 1.000 0.970
C13 C14 1.514 1.530
C13 H13 1.100 1.089
C13 H13A 1.100 1.089
C14 H14 1.100 1.090
C14 H14A 1.101 1.091
C14 H14B 1.100 1.090
C15 C16 1.529 1.530
C15 H15 1.100 1.090
C15 H15A 1.100 1.090
C17 C16 1.520 1.531
C16 C18 1.527 1.529
C16 H16 1.100 1.090
C17 H17 1.100 1.090
C17 H17A 1.100 1.089
C17 H17B 1.100 1.090
C18 H18 1.100 1.090
C18 H18A 1.100 1.091
C18 H18B 1.100 1.090
C20 C19 1.392 1.382
C19 H19 1.080 1.079
C21 C20 1.392 1.382
C20 H20 1.080 1.080
C22 C21 1.388 1.382
C21 H21 1.080 1.080
C22 C23 1.393 1.382
C22 H22 1.080 1.080
C23 H23 1.079 1.080

Bond Angles for UBU

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C23 C1 C2 120.4 120.0
C23 C1 C19 120.1 120.0
C22 C23 C1 119.7 120.0
C1 C23 H23 120.2 120.0
C1 C2 O3 108.2 109.5
C1 C2 H2 109.9 109.5
C1 C2 H2A 109.9 109.5
C1 C19 H19 119.9 120.0
O3 C2 H2 109.9 109.5
O3 C2 H2A 109.9 109.4
C2 O3 C4 119.7 117.0
H2 C2 H2A 109.0 109.4
O3 C4 O26 119.1 120.0
O3 C4 N5 116.6 120.0
O26 C4 N5 124.3 120.0
C4 N5 C6 120.0 120.0
C4 N5 HN5 120.0 120.0
C6 N5 HN5 120.0 120.0
N5 C6 P7 111.2 109.5
N5 C6 H6 108.9 109.5
N5 C6 H6A 108.9 109.5
P7 C6 H6 108.9 109.4
P7 C6 H6A 108.9 109.5
C6 P7 N9 104.5 109.5
H6 C6 H6A 110.1 109.5
O24 P7 N9 108.3 109.4
O8 P7 N9 111.0 109.5
P7 N9 C10 122.0 111.0
P7 N9 HN9 105.5 111.0
C10 N9 HN9 105.5 111.0
N9 C10 C15 104.7 109.5
N9 C10 H10 110.8 109.5
C11 C10 C15 109.2 109.5
C11 C10 H10 106.6 109.4
C15 C10 H10 113.6 109.5
C10 C15 C16 112.5 109.5
C10 C15 H15 108.5 109.5
C10 C15 H15A 108.5 109.5
C13 N12 HN12 118.7 120.0
C14 C13 H13 108.9 109.5
C14 C13 H13A 108.9 109.5
C13 C14 H14 109.5 109.5
C13 C14 H14A 109.5 109.5
C13 C14 H14B 109.5 109.5
H13 C13 H13A 110.1 109.5
H14 C14 H14A 109.5 109.5
H14 C14 H14B 109.4 109.5
H14A C14 H14B 109.5 109.4
C16 C15 H15 108.5 109.4
C16 C15 H15A 108.5 109.5
C15 C16 C18 110.4 109.5
C15 C16 H16 107.5 109.5
H15 C15 H15A 110.4 109.5
C17 C16 C18 109.8 109.4
C17 C16 H16 108.1 109.4
C18 C16 H16 109.4 109.5
C16 C18 H18 109.5 109.5
C16 C18 H18A 109.5 109.5
C16 C18 H18B 109.4 109.5
H17 C17 H17A 109.5 109.5
H17 C17 H17B 109.4 109.4
H17A C17 H17B 109.5 109.4
H18 C18 H18A 109.4 109.4
H18 C18 H18B 109.5 109.5
H18A C18 H18B 109.5 109.5
C20 C19 H19 119.9 120.0
C21 C20 C19 119.8 120.0
C19 C20 H20 120.1 120.0
C21 C20 H20 120.1 120.0
C22 C21 C20 119.9 120.0
C20 C21 H21 120.0 120.0
C22 C21 H21 120.0 120.0
C21 C22 H22 119.8 120.0
C22 C23 H23 120.2 120.0

Torsion Angles for UBU

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C23 C1 C2 O3 97.2 90.0
C23 C1 C2 H2 217.2 210.0
C23 C1 C2 H2A 337.2 330.0
C23 C1 C19 H19 179.7 180.0
C22 C23 C1 H23 180.0 179.7
C23 C1 C2 C19 180.5 180.3
C22 C23 C1 C2 180.1 179.7
C2 C1 C23 H23 0.1 0.0
C2 C1 C19 H19 0.3 0.3
O3 C2 C1 H2 240.0 240.0
O3 C2 C1 H2A 120.0 120.0
C1 C2 O3 C4 112.2 180.0
H2 C2 C1 H2A 240.0 240.0
C23 C1 C19 C2 179.5 179.7
C22 C23 C1 C19 0.6 0.0
C19 C1 C23 H23 180.6 180.3
C20 C19 C1 H19 180.0 180.0
C1 C19 C20 H20 179.7 180.1
C1 C2 O3 H2 120.0 120.0
C1 C2 O3 H2A 240.0 240.0
H2 C2 O3 H2A 120.0 119.9
C2 O3 C4 O26 338.4 0.0
C2 O3 C4 N5 160.0 180.0
C1 C2 H2 O3 241.1 240.0
C1 C2 H2 H2A 120.5 120.0
O3 C2 H2 H2A 239.5 240.1
H2 C2 O3 C4 352.2 60.0
C1 C2 H2A O3 118.9 120.0
C1 C2 H2A H2 239.5 240.0
O3 C2 H2A H2 120.5 119.9
H2A C2 O3 C4 232.2 300.0
C4 O3 C2 H2 352.2 60.0
C4 O3 C2 H2A 232.2 300.0
O26 C4 O3 N5 178.4 180.0
O3 C4 N5 C6 175.3 180.0
O3 C4 N5 HN5 355.3 0.0
O3 C4 O26 N5 181.7 180.0
O26 C4 N5 C6 357.0 360.0
O26 C4 N5 HN5 177.0 180.0
O3 C4 N5 O26 178.3 180.0
C6 N5 C4 HN5 180.0 180.0
C4 N5 C6 P7 208.5 95.0
C4 N5 C6 H6 328.5 215.0
C4 N5 C6 H6A 88.5 335.0
C4 N5 C6 HN5 180.0 180.0
P7 C6 N5 H6 240.0 240.0
P7 C6 N5 H6A 120.0 120.0
N5 C6 P7 N9 185.1 180.0
H6 C6 N5 H6A 240.0 240.0
C4 N5 HN5 C6 180.0 180.0
HN5 N5 C6 P7 28.5 275.0
HN5 N5 C6 H6 148.5 35.0
HN5 N5 C6 H6A 268.5 155.0
P7 C6 N5 HN5 28.5 275.0
N5 C6 P7 H6 120.0 120.0
N5 C6 P7 H6A 240.0 240.0
H6 C6 P7 H6A 120.0 120.0
O24 P7 C6 N9 116.1 120.0
O8 P7 C6 N9 241.9 240.0
C6 P7 N9 C10 132.1 174.9
C6 P7 N9 HN9 252.1 298.9
H6 C6 N5 HN5 148.5 35.0
N5 C6 H6 P7 238.6 240.0
N5 C6 H6 H6A 119.3 120.0
P7 C6 H6 H6A 240.7 240.0
H6 C6 P7 N9 65.1 60.0
H6A C6 N5 HN5 268.5 155.0
N5 C6 H6A P7 121.4 120.0
N5 C6 H6A H6 240.7 240.0
P7 C6 H6A H6 119.3 120.0
H6A C6 P7 N9 305.1 300.0
O24 P7 C6 H6 181.2 180.0
O24 P7 C6 H6A 61.2 60.0
C6 P7 O24 N9 246.3 240.0
O8 P7 O24 N9 124.5 120.0
O24 P7 N9 C10 14.7 54.9
O24 P7 N9 HN9 134.7 178.8
O8 P7 C6 H6 307.0 300.0
O8 P7 C6 H6A 187.0 180.0
C6 P7 O8 N9 113.8 120.1
O24 P7 O8 N9 236.9 240.1
O8 P7 N9 C10 248.0 295.0
O8 P7 N9 HN9 8.0 58.9
N9 P7 C6 H6 65.1 60.0
N9 P7 C6 H6A 305.1 300.0
C10 N9 P7 HN9 240.0 236.1
P7 N9 C10 C15 162.1 143.8
P7 N9 C10 H10 39.3 23.8
HO8 O8 P7 N9 123.1 304.9
P7 N9 C10 HN9 120.0 123.9
C11 C10 N9 C15 118.2 120.0
C11 C10 N9 H10 241.1 240.0
C15 C10 N9 H10 122.9 120.0
N9 C10 C15 C16 181.8 294.8
N9 C10 C15 H15 301.8 54.8
N9 C10 C15 H15A 61.8 174.8
P7 N9 HN9 C10 229.7 236.0
HN9 N9 C10 C15 42.1 19.9
HN9 N9 C10 H10 279.2 259.9
C11 C10 N9 HN9 160.4 139.9
N9 C10 C11 C15 244.4 240.0
N9 C10 C11 H10 121.4 120.0
C15 C10 C11 H10 236.9 240.0
C11 C10 C15 C16 61.7 174.8
C11 C10 C15 H15 181.6 294.8
C11 C10 C15 H15A 301.6 54.8
C15 C10 N9 HN9 42.1 19.9
N9 C10 C15 H10 238.9 240.0
C11 C10 C15 H10 118.8 120.0
C16 C15 C10 H15 240.0 240.0
C16 C15 C10 H15A 120.0 120.0
C10 C15 C16 C18 195.7 293.9
C10 C15 C16 H16 314.9 54.0
H15 C15 C10 H15A 240.0 240.0
H10 C10 N9 HN9 279.2 259.9
N9 C10 H10 C15 117.6 120.0
C11 C10 H10 C15 239.8 240.0
H10 C10 C15 C16 302.9 54.9
H10 C10 C15 H15 62.9 174.8
H10 C10 C15 H15A 182.9 294.9
N12 C11 C10 C15 80.9 300.0
N12 C11 C10 H10 204.0 60.0
O25 C11 C10 H10 24.6 240.0
C14 C13 N12 HN12 297.4 0.0
H13 C13 C14 H13A 120.0 120.0
H14 C14 C13 H14A 240.0 240.0
H14 C14 C13 H14B 120.0 120.0
H14A C14 C13 H14B 240.0 240.0
H13 C13 N12 HN12 57.5 120.0
C14 C13 H13 H13A 240.7 240.0
H13 C13 C14 H14 60.0 180.0
H13 C13 C14 H14A 180.0 300.0
H13 C13 C14 H14B 300.0 60.0
H13A C13 N12 HN12 177.4 240.0
C14 C13 H13A H13 119.3 120.0
H13A C13 C14 H14 300.0 60.0
H13A C13 C14 H14A 60.0 180.0
H13A C13 C14 H14B 180.0 300.0
H14 C14 C13 H13 60.0 180.0
H14 C14 C13 H13A 300.0 60.0
C13 C14 H14 H14A 120.0 120.0
C13 C14 H14 H14B 240.0 240.0
H14A C14 H14 H14B 120.0 120.0
H14A C14 C13 H13 180.0 300.0
H14A C14 C13 H13A 60.0 180.0
C13 C14 H14A H14 240.0 240.0
C13 C14 H14A H14B 120.0 120.0
H14 C14 H14A H14B 240.0 240.0
H14B C14 C13 H13 300.0 60.0
H14B C14 C13 H13A 180.0 300.0
C13 C14 H14B H14 120.0 120.0
C13 C14 H14B H14A 240.0 240.0
H14 C14 H14B H14A 120.0 120.0
C16 C15 C10 H10 302.9 54.9
C10 C15 C16 H15 120.0 120.0
C10 C15 C16 H15A 240.0 240.0
H15 C15 C16 H15A 120.0 120.0
C17 C16 C15 C18 237.6 240.0
C17 C16 C15 H16 118.4 119.9
C18 C16 C15 H16 240.8 239.9
C15 C16 C18 H18 180.0 300.0
C15 C16 C18 H18A 300.0 60.0
C15 C16 C18 H18B 60.0 180.0
H15 C15 C10 H10 62.9 174.8
C10 C15 H15 C16 237.5 240.0
C10 C15 H15 H15A 118.8 120.0
C16 C15 H15 H15A 241.3 240.0
H15 C15 C16 C18 75.7 173.9
H15 C15 C16 H16 194.9 294.0
H15A C15 C10 H10 182.9 294.9
C10 C15 H15A C16 122.5 120.0
C10 C15 H15A H15 241.2 240.0
C16 C15 H15A H15 118.7 120.0
H15A C15 C16 C18 315.7 53.9
H15A C15 C16 H16 75.0 174.0
C17 C16 C15 H15 313.3 53.9
C17 C16 C15 H15A 193.4 293.9
C15 C16 C17 C18 122.7 120.0
C15 C16 C17 H16 241.9 240.0
C18 C16 C17 H16 119.2 120.0
C17 C16 C18 H18 303.4 60.0
C17 C16 C18 H18A 63.4 180.0
C17 C16 C18 H18B 183.4 300.0
C18 C16 C15 H15 75.7 173.9
C18 C16 C15 H15A 315.7 53.9
C15 C16 C18 H16 118.1 120.0
C17 C16 C18 H16 241.5 240.0
H18 C18 C16 H18A 240.0 240.0
H18 C18 C16 H18B 120.0 120.0
H18A C18 C16 H18B 240.0 240.0
H16 C16 C15 H15 194.9 294.0
H16 C16 C15 H15A 75.0 174.0
C15 C16 H16 C18 240.1 239.9
C17 C16 H16 C18 119.5 120.0
H16 C16 C18 H18 61.9 180.0
H16 C16 C18 H18A 181.9 300.0
H16 C16 C18 H18B 301.8 60.0
H17 C17 C16 C18 57.3 300.0
H17 C17 C16 H16 298.0 179.9
H17A C17 H17 H17B 120.0 120.0
H17A C17 C16 C18 177.3 60.0
H17A C17 C16 H16 58.1 300.0
H17 C17 H17A H17B 240.1 240.1
H17B C17 C16 C18 297.3 180.0
H17B C17 C16 H16 178.1 60.0
H17 C17 H17B H17A 120.0 120.0
H18 C18 C16 H16 61.9 180.0
C16 C18 H18 H18A 120.0 120.0
C16 C18 H18 H18B 240.0 239.9
H18A C18 H18 H18B 120.0 119.9
H18A C18 C16 H16 181.9 300.0
C16 C18 H18A H18 240.0 240.0
C16 C18 H18A H18B 120.0 120.0
H18 C18 H18A H18B 240.0 240.1
H18B C18 C16 H16 301.8 60.0
C16 C18 H18B H18 120.1 120.1
C16 C18 H18B H18A 240.0 240.0
H18 C18 H18B H18A 120.0 119.9
C23 C1 C19 C20 359.7 359.9
C1 C19 C20 H19 180.0 180.0
C21 C20 C19 H20 180.0 180.0
C22 C21 C20 C19 0.5 360.0
C19 C20 C21 H21 180.5 180.0
C21 C20 C19 H19 179.7 180.0
H19 C19 C20 H20 359.7 0.1
C19 C20 C21 H20 180.0 180.0
C22 C21 C20 H21 180.0 179.9
C20 C21 C22 H22 179.9 180.0
H20 C20 C19 H19 359.7 0.1
C21 C20 H20 C19 180.0 180.0
C22 C21 C20 H20 180.5 179.9
H20 C20 C21 H21 0.5 360.0
C21 C22 C23 C1 359.5 360.0
C20 C21 C22 H21 180.0 180.1
C21 C22 C23 H23 179.6 179.7
H21 C21 C20 C19 180.5 180.0
H21 C21 C20 H20 0.5 360.0
C22 C21 H21 C20 180.0 180.1
H21 C21 C22 H22 359.9 359.9
C1 C23 C22 H23 180.0 180.3
H22 C22 C23 C1 179.5 180.0
H22 C22 C21 C20 179.9 180.0
H22 C22 C21 H21 359.9 359.9
H22 C22 C23 H23 359.5 359.7
H23 C23 C1 C2 0.1 0.0
H23 C23 C1 C19 180.6 180.3
C22 C23 H23 C1 180.0 180.3