PDB Chemical Component UBT
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for UBT
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C6 |
C1 |
1.391 |
1.383 |
| C1 |
C2 |
1.393 |
1.382 |
| C1 |
H1 |
1.080 |
1.081 |
| C2 |
C3 |
1.390 |
1.383 |
| C2 |
H2 |
1.080 |
1.080 |
| C4 |
C3 |
1.391 |
1.382 |
| C3 |
H3 |
1.080 |
1.080 |
| C5 |
C4 |
1.389 |
1.382 |
| C4 |
C7 |
1.510 |
1.507 |
| C6 |
C5 |
1.391 |
1.382 |
| C5 |
H5 |
1.080 |
1.080 |
| C6 |
H6 |
1.080 |
1.080 |
| C7 |
O8 |
1.429 |
1.452 |
| C7 |
H7 |
1.100 |
1.090 |
| C7 |
H7A |
1.100 |
1.090 |
| O8 |
C9 |
1.448 |
1.346 |
| C9 |
O19 |
1.214 |
1.215 |
| C9 |
N10 |
1.329 |
1.348 |
| N10 |
C11 |
1.456 |
1.465 |
| N10 |
HN10 |
1.000 |
0.969 |
| C11 |
P12 |
1.806 |
1.822 |
| C11 |
H11 |
1.100 |
1.090 |
| C11 |
H11A |
1.100 |
1.090 |
| O20 |
P12 |
1.517 |
1.480 |
| O21 |
P12 |
1.514 |
1.610 |
| P12 |
N13 |
1.675 |
1.683 |
| N13 |
C14 |
1.462 |
1.469 |
| N13 |
HN13 |
1.000 |
1.009 |
| C15 |
C14 |
1.507 |
1.507 |
| C14 |
C18 |
1.527 |
1.530 |
| C14 |
H14 |
1.101 |
1.090 |
| N16 |
C15 |
1.337 |
1.347 |
| O23 |
C15 |
1.230 |
1.213 |
| C17 |
N16 |
1.459 |
1.465 |
| N16 |
HN16 |
1.000 |
0.971 |
| C27 |
C17 |
1.511 |
1.507 |
| C17 |
H17 |
1.100 |
1.091 |
| C17 |
H17A |
1.101 |
1.090 |
| C18 |
C20 |
1.535 |
1.531 |
| C18 |
H18 |
1.100 |
1.090 |
| C18 |
H18A |
1.100 |
1.090 |
| C22 |
C20 |
1.524 |
1.530 |
| C20 |
C24 |
1.529 |
1.530 |
| C20 |
H20 |
1.100 |
1.089 |
| O21 |
HO21 |
0.950 |
0.967 |
| C22 |
H22 |
1.100 |
1.090 |
| C22 |
H22A |
1.100 |
1.090 |
| C22 |
H22B |
1.099 |
1.090 |
| C24 |
H24 |
1.100 |
1.090 |
| C24 |
H24A |
1.100 |
1.090 |
| C24 |
H24B |
1.100 |
1.091 |
| O28 |
C27 |
1.252 |
1.208 |
| O31 |
C27 |
1.256 |
1.343 |
| O31 |
HO31 |
0.950 |
0.967 |
Bond Angles for UBT
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
H1 |
120.1 |
120.0 |
| C1 |
C2 |
H2 |
120.2 |
120.0 |
| C2 |
C3 |
H3 |
119.8 |
120.0 |
| C4 |
C3 |
H3 |
119.8 |
120.0 |
| C5 |
C4 |
C7 |
120.3 |
120.0 |
| C6 |
C5 |
C4 |
119.6 |
120.0 |
| C4 |
C5 |
H5 |
120.1 |
120.0 |
| C4 |
C7 |
O8 |
109.3 |
109.5 |
| C4 |
C7 |
H7 |
109.6 |
109.5 |
| C4 |
C7 |
H7A |
109.6 |
109.5 |
| C6 |
C5 |
H5 |
120.2 |
120.0 |
| C5 |
C6 |
H6 |
119.8 |
120.0 |
| O8 |
C7 |
H7 |
109.5 |
109.4 |
| O8 |
C7 |
H7A |
109.5 |
109.5 |
| C7 |
O8 |
C9 |
118.1 |
117.0 |
| H7 |
C7 |
H7A |
109.4 |
109.4 |
| O8 |
C9 |
O19 |
117.0 |
120.0 |
| O8 |
C9 |
N10 |
120.7 |
120.0 |
| O19 |
C9 |
N10 |
122.3 |
120.0 |
| C9 |
N10 |
C11 |
125.4 |
120.0 |
| C9 |
N10 |
HN10 |
117.3 |
120.0 |
| C11 |
N10 |
HN10 |
117.3 |
120.0 |
| N10 |
C11 |
P12 |
111.3 |
109.5 |
| N10 |
C11 |
H11 |
108.9 |
109.4 |
| N10 |
C11 |
H11A |
108.9 |
109.5 |
| P12 |
C11 |
H11 |
108.9 |
109.5 |
| P12 |
C11 |
H11A |
108.9 |
109.5 |
| C11 |
P12 |
N13 |
102.9 |
109.5 |
| H11 |
C11 |
H11A |
110.1 |
109.5 |
| O20 |
P12 |
N13 |
107.6 |
109.5 |
| O21 |
P12 |
N13 |
111.0 |
109.5 |
| P12 |
N13 |
C14 |
121.0 |
111.0 |
| P12 |
N13 |
HN13 |
105.8 |
111.0 |
| C14 |
N13 |
HN13 |
105.8 |
111.0 |
| N13 |
C14 |
C18 |
105.2 |
109.5 |
| N13 |
C14 |
H14 |
109.5 |
109.5 |
| C15 |
C14 |
C18 |
108.2 |
109.5 |
| C15 |
C14 |
H14 |
106.6 |
109.5 |
| C18 |
C14 |
H14 |
114.3 |
109.4 |
| C14 |
C18 |
C20 |
112.9 |
109.5 |
| C14 |
C18 |
H18 |
108.3 |
109.5 |
| C14 |
C18 |
H18A |
108.3 |
109.5 |
| C17 |
N16 |
HN16 |
118.3 |
119.9 |
| C27 |
C17 |
H17 |
108.4 |
109.4 |
| C27 |
C17 |
H17A |
108.4 |
109.4 |
| H17 |
C17 |
H17A |
110.6 |
109.5 |
| C20 |
C18 |
H18 |
108.4 |
109.5 |
| C20 |
C18 |
H18A |
108.3 |
109.4 |
| C18 |
C20 |
C24 |
111.0 |
109.4 |
| C18 |
C20 |
H20 |
106.6 |
109.5 |
| H18 |
C18 |
H18A |
110.5 |
109.5 |
| C22 |
C20 |
C24 |
110.2 |
109.5 |
| C22 |
C20 |
H20 |
107.4 |
109.5 |
| C24 |
C20 |
H20 |
109.1 |
109.5 |
| C20 |
C24 |
H24 |
109.5 |
109.5 |
| C20 |
C24 |
H24A |
109.5 |
109.5 |
| C20 |
C24 |
H24B |
109.5 |
109.5 |
| H22 |
C22 |
H22A |
109.5 |
109.5 |
| H22 |
C22 |
H22B |
109.5 |
109.4 |
| H22A |
C22 |
H22B |
109.5 |
109.5 |
| H24 |
C24 |
H24A |
109.5 |
109.5 |
| H24 |
C24 |
H24B |
109.5 |
109.4 |
| H24A |
C24 |
H24B |
109.4 |
109.4 |
Torsion Angles for UBT
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
H2 |
180.3 |
180.0 |
| C1 |
C2 |
C3 |
H3 |
179.8 |
180.0 |
| H1 |
C1 |
C2 |
H2 |
0.3 |
360.0 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.3 |
| H2 |
C2 |
C3 |
H3 |
359.8 |
360.0 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
179.7 |
| C5 |
C4 |
C3 |
H3 |
179.7 |
179.8 |
| C5 |
C4 |
C7 |
O8 |
87.1 |
90.0 |
| C5 |
C4 |
C7 |
H7 |
207.1 |
209.9 |
| C5 |
C4 |
C7 |
H7A |
327.1 |
329.9 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
180.2 |
| C4 |
C5 |
C6 |
H6 |
179.5 |
179.8 |
| C7 |
C4 |
C3 |
H3 |
0.2 |
0.2 |
| C6 |
C5 |
C4 |
C7 |
180.2 |
180.0 |
| C7 |
C4 |
C5 |
H5 |
0.2 |
359.8 |
| O8 |
C7 |
C4 |
H7 |
240.0 |
240.0 |
| O8 |
C7 |
C4 |
H7A |
120.0 |
120.1 |
| C4 |
C7 |
O8 |
C9 |
128.7 |
180.0 |
| H7 |
C7 |
C4 |
H7A |
240.0 |
240.0 |
| C5 |
C6 |
C1 |
H1 |
180.1 |
180.0 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
179.8 |
| H5 |
C5 |
C4 |
C7 |
0.2 |
359.8 |
| C6 |
C5 |
H5 |
C4 |
180.0 |
179.8 |
| H5 |
C5 |
C6 |
H6 |
359.5 |
0.0 |
| H6 |
C6 |
C1 |
H1 |
0.1 |
360.0 |
| H6 |
C6 |
C5 |
C4 |
179.5 |
179.8 |
| H6 |
C6 |
C5 |
H5 |
359.5 |
0.0 |
| C4 |
C7 |
O8 |
H7 |
120.0 |
120.0 |
| C4 |
C7 |
O8 |
H7A |
240.0 |
239.9 |
| H7 |
C7 |
O8 |
H7A |
120.0 |
120.0 |
| C7 |
O8 |
C9 |
O19 |
34.9 |
359.9 |
| C7 |
O8 |
C9 |
N10 |
214.6 |
180.0 |
| C4 |
C7 |
H7 |
O8 |
240.1 |
240.0 |
| C4 |
C7 |
H7 |
H7A |
120.1 |
120.0 |
| O8 |
C7 |
H7 |
H7A |
239.9 |
240.0 |
| H7 |
C7 |
O8 |
C9 |
8.6 |
60.1 |
| C4 |
C7 |
H7A |
O8 |
119.8 |
120.1 |
| C4 |
C7 |
H7A |
H7 |
239.9 |
240.0 |
| O8 |
C7 |
H7A |
H7 |
120.1 |
120.0 |
| H7A |
C7 |
O8 |
C9 |
248.7 |
300.1 |
| C9 |
O8 |
C7 |
H7 |
8.6 |
60.1 |
| C9 |
O8 |
C7 |
H7A |
248.7 |
300.1 |
| O19 |
C9 |
O8 |
N10 |
180.3 |
180.0 |
| O8 |
C9 |
N10 |
C11 |
180.0 |
180.0 |
| O8 |
C9 |
N10 |
HN10 |
360.0 |
360.0 |
| O8 |
C9 |
O19 |
N10 |
179.7 |
180.0 |
| O19 |
C9 |
N10 |
C11 |
359.7 |
0.0 |
| O19 |
C9 |
N10 |
HN10 |
179.6 |
180.0 |
| O8 |
C9 |
N10 |
O19 |
180.3 |
180.0 |
| C11 |
N10 |
C9 |
HN10 |
180.0 |
180.0 |
| C9 |
N10 |
C11 |
P12 |
157.0 |
95.0 |
| C9 |
N10 |
C11 |
H11 |
277.0 |
215.0 |
| C9 |
N10 |
C11 |
H11A |
37.0 |
335.0 |
| C9 |
N10 |
C11 |
HN10 |
180.0 |
180.0 |
| P12 |
C11 |
N10 |
H11 |
240.0 |
240.0 |
| P12 |
C11 |
N10 |
H11A |
120.0 |
120.0 |
| N10 |
C11 |
P12 |
N13 |
167.1 |
180.0 |
| H11 |
C11 |
N10 |
H11A |
240.0 |
240.0 |
| C9 |
N10 |
HN10 |
C11 |
180.0 |
180.0 |
| HN10 |
N10 |
C11 |
P12 |
337.0 |
275.0 |
| HN10 |
N10 |
C11 |
H11 |
97.0 |
35.0 |
| HN10 |
N10 |
C11 |
H11A |
217.0 |
155.0 |
| P12 |
C11 |
N10 |
HN10 |
337.0 |
275.0 |
| N10 |
C11 |
P12 |
H11 |
120.0 |
120.0 |
| N10 |
C11 |
P12 |
H11A |
240.0 |
240.0 |
| H11 |
C11 |
P12 |
H11A |
120.0 |
120.0 |
| O20 |
P12 |
C11 |
N13 |
114.9 |
120.0 |
| O21 |
P12 |
C11 |
N13 |
242.2 |
240.0 |
| C11 |
P12 |
N13 |
C14 |
132.7 |
175.2 |
| C11 |
P12 |
N13 |
HN13 |
252.7 |
299.2 |
| H11 |
C11 |
N10 |
HN10 |
97.0 |
35.0 |
| N10 |
C11 |
H11 |
P12 |
238.5 |
240.0 |
| N10 |
C11 |
H11 |
H11A |
119.3 |
120.0 |
| P12 |
C11 |
H11 |
H11A |
240.7 |
240.0 |
| H11 |
C11 |
P12 |
N13 |
47.1 |
60.0 |
| H11A |
C11 |
N10 |
HN10 |
217.0 |
155.0 |
| N10 |
C11 |
H11A |
P12 |
121.5 |
120.0 |
| N10 |
C11 |
H11A |
H11 |
240.8 |
240.0 |
| P12 |
C11 |
H11A |
H11 |
119.3 |
120.0 |
| H11A |
C11 |
P12 |
N13 |
287.1 |
300.0 |
| O20 |
P12 |
C11 |
H11 |
162.0 |
180.0 |
| O20 |
P12 |
C11 |
H11A |
42.0 |
60.0 |
| C11 |
P12 |
O20 |
N13 |
248.1 |
240.0 |
| O21 |
P12 |
O20 |
N13 |
124.1 |
120.0 |
| O20 |
P12 |
N13 |
C14 |
15.3 |
55.2 |
| O20 |
P12 |
N13 |
HN13 |
135.3 |
179.2 |
| O21 |
P12 |
C11 |
H11 |
289.3 |
300.0 |
| O21 |
P12 |
C11 |
H11A |
169.3 |
180.0 |
| C11 |
P12 |
O21 |
N13 |
112.5 |
120.0 |
| O20 |
P12 |
O21 |
N13 |
237.7 |
240.0 |
| O21 |
P12 |
N13 |
C14 |
248.9 |
295.2 |
| O21 |
P12 |
N13 |
HN13 |
8.9 |
59.2 |
| N13 |
P12 |
C11 |
H11 |
47.1 |
60.0 |
| N13 |
P12 |
C11 |
H11A |
287.1 |
300.0 |
| C14 |
N13 |
P12 |
HN13 |
240.0 |
236.0 |
| P12 |
N13 |
C14 |
C18 |
162.8 |
95.1 |
| P12 |
N13 |
C14 |
H14 |
39.5 |
335.1 |
| P12 |
N13 |
C14 |
HN13 |
120.0 |
124.0 |
| C15 |
C14 |
N13 |
C18 |
118.0 |
120.0 |
| C15 |
C14 |
N13 |
H14 |
241.3 |
240.0 |
| C18 |
C14 |
N13 |
H14 |
123.3 |
120.0 |
| N13 |
C14 |
C18 |
C20 |
182.6 |
185.7 |
| N13 |
C14 |
C18 |
H18 |
302.7 |
305.7 |
| N13 |
C14 |
C18 |
H18A |
62.6 |
65.7 |
| P12 |
N13 |
HN13 |
C14 |
230.5 |
236.0 |
| HN13 |
N13 |
C14 |
C18 |
42.8 |
331.1 |
| HN13 |
N13 |
C14 |
H14 |
279.5 |
211.2 |
| C15 |
C14 |
N13 |
HN13 |
160.8 |
91.2 |
| N13 |
C14 |
C15 |
C18 |
243.8 |
240.0 |
| N13 |
C14 |
C15 |
H14 |
120.4 |
120.0 |
| C18 |
C14 |
C15 |
H14 |
236.6 |
240.0 |
| C15 |
C14 |
C18 |
C20 |
61.4 |
65.6 |
| C15 |
C14 |
C18 |
H18 |
181.4 |
185.7 |
| C15 |
C14 |
C18 |
H18A |
301.4 |
305.7 |
| C18 |
C14 |
N13 |
HN13 |
42.8 |
331.1 |
| N13 |
C14 |
C18 |
H14 |
239.8 |
240.0 |
| C15 |
C14 |
C18 |
H14 |
118.6 |
120.0 |
| C20 |
C18 |
C14 |
H18 |
240.0 |
240.0 |
| C20 |
C18 |
C14 |
H18A |
120.0 |
120.0 |
| C14 |
C18 |
C20 |
C24 |
192.7 |
187.0 |
| C14 |
C18 |
C20 |
H20 |
311.3 |
306.9 |
| H18 |
C18 |
C14 |
H18A |
240.0 |
240.0 |
| H14 |
C14 |
N13 |
HN13 |
279.5 |
211.2 |
| N13 |
C14 |
H14 |
C18 |
117.8 |
120.0 |
| C15 |
C14 |
H14 |
C18 |
240.5 |
240.0 |
| H14 |
C14 |
C18 |
C20 |
302.8 |
305.7 |
| H14 |
C14 |
C18 |
H18 |
62.8 |
65.7 |
| H14 |
C14 |
C18 |
H18A |
182.8 |
185.7 |
| N16 |
C15 |
C14 |
H14 |
204.4 |
46.1 |
| O23 |
C15 |
C14 |
C18 |
260.9 |
106.1 |
| O23 |
C15 |
C14 |
H14 |
24.3 |
226.1 |
| C27 |
C17 |
N16 |
HN16 |
46.0 |
0.0 |
| H17 |
C17 |
C27 |
H17A |
120.0 |
120.0 |
| H17 |
C17 |
N16 |
HN16 |
166.0 |
120.0 |
| C27 |
C17 |
H17 |
H17A |
241.4 |
240.0 |
| H17A |
C17 |
N16 |
HN16 |
286.0 |
240.0 |
| C27 |
C17 |
H17A |
H17 |
118.6 |
120.0 |
| C20 |
C18 |
C14 |
H14 |
302.8 |
305.7 |
| C14 |
C18 |
C20 |
H18 |
120.0 |
120.0 |
| C14 |
C18 |
C20 |
H18A |
240.0 |
240.0 |
| H18 |
C18 |
C20 |
H18A |
120.0 |
120.0 |
| C22 |
C20 |
C18 |
C24 |
236.1 |
240.0 |
| C22 |
C20 |
C18 |
H20 |
117.4 |
120.1 |
| C24 |
C20 |
C18 |
H20 |
241.4 |
240.0 |
| C18 |
C20 |
C24 |
H24 |
180.0 |
60.0 |
| C18 |
C20 |
C24 |
H24A |
300.0 |
180.1 |
| C18 |
C20 |
C24 |
H24B |
60.0 |
300.0 |
| H18 |
C18 |
C14 |
H14 |
62.8 |
65.7 |
| C14 |
C18 |
H18 |
C20 |
237.1 |
240.0 |
| C14 |
C18 |
H18 |
H18A |
118.6 |
120.0 |
| C20 |
C18 |
H18 |
H18A |
241.4 |
240.0 |
| H18 |
C18 |
C20 |
C24 |
72.7 |
66.9 |
| H18 |
C18 |
C20 |
H20 |
191.3 |
186.9 |
| H18A |
C18 |
C14 |
H14 |
182.8 |
185.7 |
| C14 |
C18 |
H18A |
C20 |
122.9 |
120.0 |
| C14 |
C18 |
H18A |
H18 |
241.4 |
240.0 |
| C20 |
C18 |
H18A |
H18 |
118.6 |
120.0 |
| H18A |
C18 |
C20 |
C24 |
312.7 |
306.9 |
| H18A |
C18 |
C20 |
H20 |
71.3 |
66.9 |
| C22 |
C20 |
C18 |
H18 |
308.7 |
307.0 |
| C22 |
C20 |
C18 |
H18A |
188.8 |
187.0 |
| C18 |
C20 |
C22 |
C24 |
124.4 |
120.0 |
| C18 |
C20 |
C22 |
H20 |
243.0 |
240.0 |
| C24 |
C20 |
C22 |
H20 |
118.7 |
120.0 |
| C22 |
C20 |
C24 |
H24 |
305.3 |
180.0 |
| C22 |
C20 |
C24 |
H24A |
65.3 |
300.0 |
| C22 |
C20 |
C24 |
H24B |
185.3 |
59.9 |
| C24 |
C20 |
C18 |
H18 |
72.7 |
66.9 |
| C24 |
C20 |
C18 |
H18A |
312.7 |
306.9 |
| C18 |
C20 |
C24 |
H20 |
117.1 |
120.0 |
| C22 |
C20 |
C24 |
H20 |
242.4 |
239.9 |
| H24 |
C24 |
C20 |
H24A |
240.0 |
240.0 |
| H24 |
C24 |
C20 |
H24B |
120.0 |
120.0 |
| H24A |
C24 |
C20 |
H24B |
240.0 |
240.1 |
| H20 |
C20 |
C18 |
H18 |
191.3 |
186.9 |
| H20 |
C20 |
C18 |
H18A |
71.3 |
66.9 |
| C18 |
C20 |
H20 |
C24 |
240.2 |
240.0 |
| C22 |
C20 |
H20 |
C24 |
119.4 |
120.1 |
| H20 |
C20 |
C24 |
H24 |
62.9 |
300.0 |
| H20 |
C20 |
C24 |
H24A |
182.9 |
60.1 |
| H20 |
C20 |
C24 |
H24B |
302.9 |
180.0 |
| HO21 |
O21 |
P12 |
N13 |
122.3 |
304.9 |
| H22 |
C22 |
C20 |
C24 |
55.6 |
64.2 |
| H22 |
C22 |
C20 |
H20 |
297.0 |
304.1 |
| H22A |
C22 |
H22 |
H22B |
120.0 |
120.0 |
| H22A |
C22 |
C20 |
C24 |
175.6 |
184.2 |
| H22A |
C22 |
C20 |
H20 |
56.9 |
64.1 |
| H22 |
C22 |
H22A |
H22B |
240.0 |
240.0 |
| H22B |
C22 |
C20 |
C24 |
295.6 |
304.2 |
| H22B |
C22 |
C20 |
H20 |
177.0 |
184.2 |
| H22 |
C22 |
H22B |
H22A |
120.0 |
120.0 |
| H24 |
C24 |
C20 |
H20 |
62.9 |
300.0 |
| C20 |
C24 |
H24 |
H24A |
120.0 |
120.0 |
| C20 |
C24 |
H24 |
H24B |
240.0 |
239.9 |
| H24A |
C24 |
H24 |
H24B |
120.0 |
119.9 |
| H24A |
C24 |
C20 |
H20 |
182.9 |
60.1 |
| C20 |
C24 |
H24A |
H24 |
240.0 |
239.9 |
| C20 |
C24 |
H24A |
H24B |
120.0 |
120.0 |
| H24 |
C24 |
H24A |
H24B |
240.0 |
240.1 |
| H24B |
C24 |
C20 |
H20 |
302.9 |
180.0 |
| C20 |
C24 |
H24B |
H24 |
120.0 |
120.1 |
| C20 |
C24 |
H24B |
H24A |
240.0 |
240.0 |
| H24 |
C24 |
H24B |
H24A |
120.0 |
119.9 |
| O28 |
C27 |
C17 |
H17 |
230.0 |
240.0 |
| O28 |
C27 |
C17 |
H17A |
110.0 |
120.0 |
| O31 |
C27 |
C17 |
H17 |
49.2 |
60.0 |
| O31 |
C27 |
C17 |
H17A |
289.2 |
300.0 |