PDB Chemical Component UBC

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for UBC

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O1	C10	1.255	1.348
O1	HO1	0.950	0.966
C10	O2	1.255	1.215
C10	C22	1.500	1.477
C22	C23	1.395	1.397
C22	C21	1.482	1.396
C23	C24	1.401	1.378
C23	H23	1.080	1.081
C24	C25	1.393	1.384
C24	H24	1.080	1.080
C25	C26	1.386	1.382
C25	H25	1.080	1.080
C26	C21	1.382	1.380
C26	H26	1.080	1.080
C21	C17	1.506	1.507
C17	N6	1.471	1.465
C17	H171	1.100	1.090
C17	H172	1.100	1.090
N6	C5	1.402	1.346
N6	C1	1.397	1.348
C5	O8	1.254	1.216
C5	N4	1.421	1.346
C1	O7	1.234	1.219
C1	C2	1.386	1.415
C2	C3	1.394	1.350
C2	H2	1.080	1.080
C3	N4	1.343	1.369
C3	H3	1.080	1.080
N4	CB	1.469	1.465
CB	CA	1.543	1.531
CB	HB1	1.100	1.089
CB	HB2	1.100	1.090
CA	N	1.463	1.469
CA	C	1.503	1.507
CA	HA	1.100	1.090
N	HN1	1.000	1.009
N	HN2	1.000	1.009
C	O	1.248	1.343
C	OXT	1.256	1.208
O	HO	0.950	0.967

Bond Angles for UBC

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C10	O1	HO1	109.5	120.0
O1	C10	O2	123.0	120.0
O1	C10	C22	118.8	120.0
O2	C10	C22	118.1	120.0
C10	C22	C23	121.0	120.2
C10	C22	C21	120.8	120.2
C23	C22	C21	118.1	119.7
C22	C23	C24	119.4	119.8
C22	C23	H23	120.3	120.0
C22	C21	C26	120.3	119.8
C22	C21	C17	119.4	120.1
C24	C23	H23	120.3	120.1
C23	C24	C25	121.7	120.2
C23	C24	H24	119.1	119.9
C25	C24	H24	119.2	119.9
C24	C25	C26	120.7	120.3
C24	C25	H25	119.6	119.8
C26	C25	H25	119.6	119.9
C25	C26	C21	119.7	120.2
C25	C26	H26	120.1	120.0
C21	C26	H26	120.1	119.9
C26	C21	C17	120.3	120.1
C21	C17	N6	113.0	109.5
C21	C17	H171	107.5	109.4
C21	C17	H172	108.3	109.5
N6	C17	H171	107.5	109.5
N6	C17	H172	108.3	109.5
C17	N6	C5	124.0	119.9
C17	N6	C1	116.7	119.9
H171	C17	H172	112.3	109.5
C5	N6	C1	119.3	120.2
N6	C5	O8	120.9	119.6
N6	C5	N4	118.4	120.9
N6	C1	O7	116.9	120.3
N6	C1	C2	121.2	119.4
O8	C5	N4	120.7	119.5
C5	N4	C3	121.0	120.6
C5	N4	CB	119.5	119.7
O7	C1	C2	121.9	120.3
C1	C2	C3	118.8	119.1
C1	C2	H2	120.6	120.5
C3	C2	H2	120.6	120.4
C2	C3	N4	121.4	119.6
C2	C3	H3	119.3	120.2
N4	C3	H3	119.3	120.2
C3	N4	CB	119.4	119.7
N4	CB	CA	106.6	109.5
N4	CB	HB1	111.0	109.5
N4	CB	HB2	110.4	109.5
CA	CB	HB1	111.1	109.4
CA	CB	HB2	110.4	109.4
CB	CA	N	112.4	109.4
CB	CA	C	108.9	109.5
CB	CA	HA	108.0	109.5
HB1	CB	HB2	107.3	109.5
N	CA	C	109.9	109.5
N	CA	HA	107.0	109.4
CA	N	HN1	109.5	106.7
CA	N	HN2	109.5	106.7
C	CA	HA	110.6	109.5
CA	C	O	118.0	120.0
CA	C	OXT	119.8	120.0
HN1	N	HN2	109.4	106.7
O	C	OXT	122.2	120.0
C	O	HO	109.5	120.0

Torsion Angles for UBC

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O2	C10	O1	C22	179.7	180.0
O1	C10	C22	C23	220.2	5.9
O1	C10	C22	C21	40.8	185.3
HO1	O1	C10	O2	0.0	360.0
HO1	O1	C10	C22	180.3	179.9
O2	C10	O1	HO1	0.0	360.0
O1	C10	O2	C22	180.3	180.0
O2	C10	C22	C23	40.5	185.8
O2	C10	C22	C21	221.0	5.3
C22	C10	O1	HO1	180.3	179.9
O1	C10	C22	O2	179.7	180.0
C23	C22	C10	C21	179.4	180.6
C10	C22	C23	C24	180.4	180.0
C10	C22	C23	H23	0.5	359.7
C10	C22	C21	C26	180.1	180.0
C10	C22	C21	C17	359.3	0.3
C10	C22	C23	C21	180.6	179.4
C23	C22	C21	C26	0.6	359.4
C23	C22	C21	C17	179.9	179.7
C24	C23	C22	H23	180.0	180.3
C22	C23	C24	C25	359.9	359.7
C22	C23	C24	H24	179.9	179.7
C10	C22	C21	C23	179.4	180.6
C21	C22	C23	C24	359.9	0.6
C21	C22	C23	H23	179.9	180.3
C25	C26	C21	C22	359.1	0.3
C22	C21	C26	H26	179.1	180.3
C26	C21	C22	C17	180.7	179.7
C22	C21	C17	N6	150.5	182.4
C22	C21	C17	H171	32.0	62.4
C22	C21	C17	H172	270.5	302.4
C24	C23	C22	C21	359.9	0.6
C22	C23	C24	H23	180.0	179.7
C25	C24	C23	H24	180.0	180.0
C23	C24	C25	C26	359.9	0.0
C23	C24	C25	H25	179.9	180.1
H23	C23	C22	C21	179.9	180.3
C22	C23	H23	C24	180.0	180.3
H23	C23	C24	C25	179.8	180.0
H23	C23	C24	H24	359.8	0.0
C25	C24	C23	H23	179.8	180.0
C23	C24	C25	H24	180.0	180.0
C26	C25	C24	H25	180.0	180.0
C24	C25	C26	C21	0.6	360.0
C24	C25	C26	H26	180.6	180.0
H24	C24	C23	H23	359.8	0.0
C23	C24	H24	C25	180.0	180.0
H24	C24	C25	C26	179.9	180.0
H24	C24	C25	H25	359.9	0.1
C22	C21	C26	C25	359.1	0.3
C26	C25	C24	H24	179.9	180.0
C24	C25	C26	H25	180.0	180.0
C21	C26	C25	H26	180.0	180.0
C25	C26	C21	C17	179.9	180.0
H25	C25	C24	H24	359.9	0.1
C24	C25	H25	C26	180.0	180.0
H25	C25	C26	C21	180.6	179.9
H25	C25	C26	H26	0.6	359.9
C22	C21	C26	C17	179.3	180.3
C21	C26	C25	H25	180.6	179.9
C25	C26	C21	H26	180.0	180.0
C26	C21	C17	N6	329.8	2.7
C26	C21	C17	H171	211.3	242.7
C26	C21	C17	H172	89.8	122.7
H26	C26	C25	H25	0.6	359.9
C25	C26	H26	C21	180.0	180.0
H26	C26	C21	C17	359.9	0.0
C22	C21	C17	C26	180.7	179.7
C17	C21	C26	H26	359.9	0.0
N6	C17	C21	H171	118.5	120.0
N6	C17	C21	H172	240.0	240.0
C21	C17	N6	C5	282.7	266.6
C21	C17	N6	C1	104.8	86.3
H171	C17	C21	H172	121.5	120.0
C21	C17	N6	H171	241.5	240.0
C21	C17	N6	H172	120.0	120.0
H171	C17	N6	H172	238.5	239.9
C5	N6	C17	C1	177.8	180.3
C17	N6	C5	O8	2.1	359.7
C17	N6	C5	N4	181.0	180.3
C17	N6	C1	O7	358.9	360.0
C17	N6	C1	C2	178.8	180.0
C21	C17	H171	N6	122.0	120.0
C21	C17	H171	H172	241.0	240.0
N6	C17	H171	H172	119.0	120.0
H171	C17	N6	C5	41.1	26.5
H171	C17	N6	C1	223.3	206.2
C21	C17	H172	N6	237.1	240.0
C21	C17	H172	H171	118.5	120.0
N6	C17	H172	H171	241.4	240.0
H172	C17	N6	C5	162.7	146.6
H172	C17	N6	C1	344.9	326.3
C5	N6	C17	H171	41.1	26.5
C5	N6	C17	H172	162.7	146.6
C17	N6	C5	C1	182.2	179.7
C5	N6	C1	O7	181.0	179.7
C5	N6	C1	C2	0.8	359.7
O8	C5	N6	N4	181.2	179.5
N6	C5	N4	C3	1.5	359.5
N6	C5	N4	CB	178.9	179.8
C1	N6	C17	H171	223.3	206.2
C1	N6	C17	H172	344.9	326.3
C17	N6	C1	C5	177.9	180.3
C1	N6	C5	O8	179.9	180.0
C1	N6	C5	N4	358.7	0.5
O7	C1	N6	C2	180.2	180.0
N6	C1	C2	C3	359.4	0.0
N6	C1	C2	H2	179.4	180.0
O8	C5	N6	C1	179.9	180.0
N6	C5	O8	N4	178.8	180.5
O8	C5	N4	C3	180.3	180.0
O8	C5	N4	CB	357.7	0.3
N4	C5	N6	C1	358.7	0.5
N6	C5	N4	O8	181.2	179.5
C2	C3	N4	C5	358.7	0.2
C5	N4	C3	H3	178.7	180.3
C3	N4	C5	CB	182.6	179.8
C5	N4	CB	CA	280.9	269.7
C5	N4	CB	HB1	159.8	149.8
C5	N4	CB	HB2	40.9	29.7
N6	C1	O7	C2	179.8	180.0
O7	C1	C2	C3	179.3	180.0
O7	C1	C2	H2	359.3	360.0
N6	C1	C2	O7	180.2	180.0
C3	C2	C1	H2	180.0	180.0
C1	C2	C3	N4	0.8	0.0
C1	C2	C3	H3	180.8	180.0
C5	N4	C3	C2	358.7	0.2
C1	C2	C3	H2	180.0	180.0
N4	C3	C2	H3	180.0	180.1
C2	C3	N4	CB	181.4	180.0
C1	C2	H2	C3	180.0	180.0
H2	C2	C3	N4	180.8	180.0
H2	C2	C3	H3	0.8	360.0
C5	N4	C3	CB	177.4	180.2
N4	C3	C2	H2	180.8	180.0
C2	C3	N4	H3	180.0	179.9
C3	N4	CB	CA	98.3	90.0
C3	N4	CB	HB1	337.2	330.0
C3	N4	CB	HB2	218.3	210.0
H3	C3	C2	H2	0.8	360.0
C2	C3	H3	N4	180.0	180.1
H3	C3	N4	CB	1.4	0.0
C5	N4	CB	C3	182.6	179.8
CB	N4	C3	H3	1.4	0.0
CA	CB	N4	HB1	121.1	120.0
CA	CB	N4	HB2	240.0	240.0
N4	CB	CA	N	309.9	305.0
N4	CB	CA	C	187.9	185.0
N4	CB	CA	HA	67.7	64.9
HB1	CB	N4	HB2	118.9	120.1
N4	CB	CA	HB1	238.9	239.9
N4	CB	CA	HB2	120.0	120.0
HB1	CB	CA	HB2	241.1	240.0
N	CA	CB	C	122.0	120.0
N	CA	CB	HA	242.2	240.1
CB	CA	N	HN1	98.3	300.0
CB	CA	N	HN2	338.3	53.8
C	CA	CB	HA	120.2	120.1
CB	CA	C	O	119.7	280.0
CB	CA	C	OXT	300.0	100.0
N4	CB	HB1	CA	118.5	120.0
N4	CB	HB1	HB2	239.2	240.0
CA	CB	HB1	HB2	120.8	119.9
HB1	CB	CA	N	71.0	65.0
HB1	CB	CA	C	309.0	305.1
HB1	CB	CA	HA	188.8	185.0
N4	CB	HB2	CA	242.3	240.0
N4	CB	HB2	HB1	121.2	120.1
CA	CB	HB2	HB1	238.8	240.1
HB2	CB	CA	N	189.9	185.0
HB2	CB	CA	C	67.9	65.0
HB2	CB	CA	HA	307.7	305.0
N	CA	CB	HB1	71.0	65.0
N	CA	CB	HB2	189.9	185.0
CB	CA	N	C	238.5	240.0
CB	CA	N	HA	118.4	120.0
C	CA	N	HA	239.9	240.0
N	CA	C	O	356.2	160.0
N	CA	C	OXT	176.5	340.0
HN1	N	CA	HN2	120.0	246.2
C	CA	CB	HB1	309.0	305.1
C	CA	CB	HB2	67.9	65.0
CB	CA	C	N	123.5	120.0
CB	CA	C	HA	241.4	240.0
N	CA	C	HA	117.9	120.0
C	CA	N	HN1	219.7	60.0
C	CA	N	HN2	99.7	173.8
O	C	CA	OXT	179.7	180.0
CA	C	O	HO	180.3	180.0
HA	CA	CB	HB1	188.8	185.0
HA	CA	CB	HB2	307.7	305.0
CB	CA	HA	N	238.8	240.1
CB	CA	HA	C	119.1	120.1
N	CA	HA	C	240.3	240.0
HA	CA	N	HN1	339.8	180.1
HA	CA	N	HN2	219.8	293.8
HA	CA	C	O	238.3	40.0
HA	CA	C	OXT	58.6	220.0
HN1	N	CA	C	219.7	60.0
HN1	N	CA	HA	339.8	180.1
CA	N	HN1	HN2	239.9	113.8
HN2	N	CA	C	99.7	173.8
HN2	N	CA	HA	219.8	293.8
CA	N	HN2	HN1	120.0	246.2
O	C	CA	HA	238.3	40.0
CA	C	O	OXT	180.3	180.0
OXT	C	CA	HA	58.6	220.0
CA	C	OXT	O	179.7	180.0
OXT	C	O	HO	0.0	0.1
HO	O	C	OXT	0.0	0.1