PDB Chemical Component UB3
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for UB3
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
C1 |
1.398 |
1.382 |
| C1 |
C31 |
1.399 |
1.383 |
| C1 |
H1 |
1.080 |
1.079 |
| C3 |
C2 |
1.395 |
1.383 |
| C2 |
H2 |
1.080 |
1.081 |
| C3 |
C4 |
1.400 |
1.382 |
| C3 |
H3 |
1.080 |
1.080 |
| C5 |
C4 |
1.535 |
1.507 |
| C4 |
C30 |
1.400 |
1.384 |
| O6 |
C5 |
1.440 |
1.452 |
| C5 |
H5 |
1.100 |
1.090 |
| C5 |
H5A |
1.100 |
1.090 |
| C7 |
O6 |
1.342 |
1.347 |
| N8 |
C7 |
1.352 |
1.347 |
| O29 |
C7 |
1.219 |
1.215 |
| C9 |
N8 |
1.458 |
1.465 |
| N8 |
HN8 |
1.000 |
0.970 |
| P10 |
C9 |
1.829 |
1.823 |
| C9 |
H9 |
1.100 |
1.090 |
| C9 |
H9A |
1.100 |
1.090 |
| N13 |
P10 |
1.634 |
1.683 |
| P10 |
O12 |
1.494 |
1.479 |
| P10 |
O11 |
1.488 |
1.611 |
| O11 |
HO11 |
0.950 |
0.967 |
| C14 |
N13 |
1.484 |
1.469 |
| N13 |
HN13 |
1.000 |
1.008 |
| C15 |
C14 |
1.564 |
1.530 |
| C14 |
C18 |
1.519 |
1.506 |
| C14 |
H14 |
1.100 |
1.089 |
| C16 |
C15 |
1.549 |
1.530 |
| C17 |
C15 |
1.550 |
1.529 |
| C15 |
H15 |
1.100 |
1.090 |
| C16 |
H16 |
1.100 |
1.090 |
| C16 |
H16A |
1.100 |
1.090 |
| C16 |
H16B |
1.100 |
1.090 |
| C17 |
H17 |
1.100 |
1.091 |
| C17 |
H17A |
1.100 |
1.090 |
| C17 |
H17B |
1.100 |
1.090 |
| O28 |
C18 |
1.218 |
1.213 |
| C18 |
N19 |
1.357 |
1.348 |
| N19 |
C20 |
1.448 |
1.465 |
| N19 |
HN19 |
1.000 |
0.969 |
| C24 |
C20 |
1.523 |
1.530 |
| C20 |
C21 |
1.505 |
1.507 |
| C20 |
H20 |
1.100 |
1.091 |
| C21 |
O22 |
1.266 |
1.209 |
| C21 |
O23 |
1.263 |
1.343 |
| O23 |
HO23 |
0.950 |
0.967 |
| C30 |
C31 |
1.399 |
1.382 |
| C30 |
H30 |
1.080 |
1.079 |
| C31 |
H31 |
1.080 |
1.080 |
| C25 |
C24 |
1.537 |
1.530 |
| C24 |
H24 |
1.100 |
1.090 |
| C24 |
H24A |
1.100 |
1.090 |
| C27 |
C25 |
1.561 |
1.529 |
| C26 |
C25 |
1.549 |
1.529 |
| C25 |
H25 |
1.100 |
1.090 |
| C26 |
H26 |
1.101 |
1.090 |
| C26 |
H26A |
1.099 |
1.090 |
| C26 |
H26B |
1.100 |
1.091 |
| C27 |
H27 |
1.100 |
1.090 |
| C27 |
H27A |
1.100 |
1.090 |
| C27 |
H27B |
1.100 |
1.090 |
Bond Angles for UB3
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
H1 |
119.9 |
120.0 |
| C1 |
C31 |
H31 |
120.0 |
120.0 |
| C3 |
C2 |
H2 |
120.1 |
120.0 |
| C5 |
C4 |
C30 |
121.1 |
120.0 |
| O6 |
C5 |
C4 |
108.0 |
109.5 |
| C4 |
C5 |
H5 |
110.0 |
109.5 |
| C4 |
C5 |
H5A |
110.0 |
109.5 |
| C4 |
C30 |
C31 |
120.0 |
120.0 |
| C4 |
C30 |
H30 |
120.0 |
120.0 |
| O6 |
C5 |
H5 |
109.9 |
109.4 |
| O6 |
C5 |
H5A |
109.9 |
109.4 |
| C7 |
O6 |
C5 |
114.8 |
117.0 |
| H5 |
C5 |
H5A |
109.0 |
109.5 |
| O29 |
C7 |
O6 |
123.3 |
120.0 |
| C9 |
N8 |
HN8 |
120.5 |
119.9 |
| P10 |
C9 |
H9 |
108.8 |
109.5 |
| P10 |
C9 |
H9A |
108.8 |
109.5 |
| H9 |
C9 |
H9A |
110.1 |
109.4 |
| O12 |
P10 |
O11 |
108.9 |
109.4 |
| P10 |
O11 |
HO11 |
109.5 |
114.0 |
| C14 |
N13 |
HN13 |
106.7 |
111.1 |
| C15 |
C14 |
H14 |
107.8 |
109.5 |
| C18 |
C14 |
H14 |
112.0 |
109.5 |
| C14 |
C18 |
N19 |
121.0 |
120.0 |
| C16 |
C15 |
H15 |
109.6 |
109.5 |
| C17 |
C15 |
H15 |
106.8 |
109.5 |
| H16 |
C16 |
H16A |
109.5 |
109.5 |
| H16 |
C16 |
H16B |
109.4 |
109.5 |
| H16A |
C16 |
H16B |
109.5 |
109.5 |
| H17 |
C17 |
H17A |
109.4 |
109.5 |
| H17 |
C17 |
H17B |
109.5 |
109.4 |
| H17A |
C17 |
H17B |
109.5 |
109.4 |
| O28 |
C18 |
N19 |
121.5 |
120.0 |
| C18 |
N19 |
C20 |
122.4 |
120.0 |
| C18 |
N19 |
HN19 |
118.8 |
120.0 |
| C20 |
N19 |
HN19 |
118.8 |
120.0 |
| N19 |
C20 |
C21 |
112.4 |
109.5 |
| N19 |
C20 |
H20 |
102.9 |
109.5 |
| C24 |
C20 |
H20 |
98.3 |
109.4 |
| C21 |
C20 |
H20 |
106.6 |
109.4 |
| C20 |
C21 |
O22 |
120.3 |
120.0 |
| C20 |
C21 |
O23 |
115.4 |
120.0 |
| O22 |
C21 |
O23 |
124.3 |
120.0 |
| C21 |
O23 |
HO23 |
109.5 |
117.0 |
| C31 |
C30 |
H30 |
120.0 |
120.1 |
| C30 |
C31 |
H31 |
120.1 |
120.0 |
| C25 |
C24 |
H24 |
104.6 |
109.5 |
| C25 |
C24 |
H24A |
104.6 |
109.5 |
| H24 |
C24 |
H24A |
113.9 |
109.4 |
| C27 |
C25 |
H25 |
111.9 |
109.5 |
| C26 |
C25 |
H25 |
105.7 |
109.5 |
| H26 |
C26 |
H26A |
109.4 |
109.5 |
| H26 |
C26 |
H26B |
109.4 |
109.4 |
| H26A |
C26 |
H26B |
109.5 |
109.4 |
| H27 |
C27 |
H27A |
109.4 |
109.5 |
| H27 |
C27 |
H27B |
109.5 |
109.4 |
| H27A |
C27 |
H27B |
109.5 |
109.4 |
Torsion Angles for UB3
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C31 |
H31 |
180.3 |
179.7 |
| C1 |
C31 |
C30 |
H30 |
178.3 |
179.9 |
| C30 |
C31 |
C1 |
H31 |
180.0 |
180.3 |
| H1 |
C1 |
C31 |
H31 |
0.3 |
0.0 |
| C3 |
C2 |
C1 |
H1 |
180.1 |
179.8 |
| H2 |
C2 |
C1 |
H1 |
0.1 |
359.7 |
| C3 |
C4 |
C5 |
H5 |
30.1 |
210.0 |
| C3 |
C4 |
C5 |
H5A |
150.2 |
330.1 |
| C3 |
C4 |
C30 |
H30 |
182.9 |
180.0 |
| H3 |
C3 |
C2 |
H2 |
1.0 |
0.0 |
| C5 |
C4 |
C30 |
C31 |
179.2 |
180.1 |
| C5 |
C4 |
C30 |
H30 |
359.1 |
0.0 |
| O6 |
C5 |
C4 |
H5 |
240.0 |
240.0 |
| O6 |
C5 |
C4 |
H5A |
120.0 |
120.0 |
| C7 |
O6 |
C5 |
C4 |
122.4 |
180.0 |
| H5 |
C5 |
C4 |
H5A |
240.0 |
239.9 |
| O6 |
C5 |
C4 |
C30 |
93.9 |
270.0 |
| C30 |
C4 |
C5 |
H5 |
213.9 |
30.0 |
| C30 |
C4 |
C5 |
H5A |
333.9 |
150.1 |
| C31 |
C30 |
C4 |
H30 |
180.0 |
180.0 |
| C4 |
C30 |
C31 |
H31 |
178.2 |
180.2 |
| C4 |
C5 |
O6 |
H5 |
120.0 |
120.0 |
| C4 |
C5 |
O6 |
H5A |
240.0 |
240.0 |
| H5 |
C5 |
O6 |
H5A |
120.0 |
120.0 |
| O29 |
C7 |
O6 |
C5 |
2.0 |
0.1 |
| H5 |
C5 |
C4 |
C30 |
213.9 |
30.0 |
| O6 |
C5 |
H5 |
C4 |
118.8 |
120.0 |
| C4 |
C5 |
H5 |
H5A |
120.6 |
120.1 |
| O6 |
C5 |
H5 |
H5A |
239.4 |
240.0 |
| C7 |
O6 |
C5 |
H5 |
2.4 |
60.0 |
| H5A |
C5 |
C4 |
C30 |
333.9 |
150.1 |
| O6 |
C5 |
H5A |
C4 |
241.2 |
240.0 |
| C4 |
C5 |
H5A |
H5 |
239.4 |
239.9 |
| O6 |
C5 |
H5A |
H5 |
120.6 |
120.0 |
| C7 |
O6 |
C5 |
H5A |
242.4 |
300.0 |
| P10 |
C9 |
N8 |
HN8 |
3.3 |
275.0 |
| H9 |
C9 |
P10 |
H9A |
120.0 |
120.0 |
| H9 |
C9 |
N8 |
HN8 |
123.4 |
35.1 |
| P10 |
C9 |
H9 |
H9A |
240.9 |
240.0 |
| H9A |
C9 |
N8 |
HN8 |
243.3 |
155.0 |
| P10 |
C9 |
H9A |
H9 |
119.2 |
120.0 |
| N13 |
P10 |
C9 |
H9 |
55.4 |
60.0 |
| N13 |
P10 |
C9 |
H9A |
295.4 |
300.0 |
| N13 |
P10 |
O11 |
HO11 |
237.6 |
60.0 |
| O12 |
P10 |
C9 |
H9 |
297.1 |
299.9 |
| O12 |
P10 |
C9 |
H9A |
177.1 |
180.0 |
| O12 |
P10 |
O11 |
HO11 |
360.0 |
180.0 |
| O11 |
P10 |
C9 |
H9 |
179.7 |
180.0 |
| O11 |
P10 |
C9 |
H9A |
59.7 |
60.0 |
| C15 |
C14 |
N13 |
HN13 |
27.9 |
330.4 |
| C18 |
C14 |
C15 |
H14 |
121.6 |
120.1 |
| C15 |
C14 |
C18 |
N19 |
102.6 |
284.2 |
| C18 |
C14 |
N13 |
HN13 |
147.3 |
90.4 |
| C15 |
C14 |
C18 |
H14 |
241.0 |
240.0 |
| O28 |
C18 |
C14 |
N19 |
180.3 |
180.0 |
| C14 |
C18 |
N19 |
C20 |
168.0 |
185.0 |
| C14 |
C18 |
N19 |
HN19 |
348.0 |
5.0 |
| H14 |
C14 |
N13 |
HN13 |
268.9 |
210.5 |
| H14 |
C14 |
C18 |
N19 |
221.6 |
44.2 |
| C16 |
C15 |
C14 |
H14 |
193.6 |
185.8 |
| C17 |
C15 |
C16 |
H15 |
116.9 |
120.0 |
| C17 |
C15 |
C14 |
H14 |
318.7 |
305.7 |
| C16 |
C15 |
C17 |
H15 |
241.3 |
240.0 |
| H15 |
C15 |
C14 |
H14 |
75.1 |
65.8 |
| H16 |
C16 |
C15 |
H15 |
295.4 |
183.0 |
| H16A |
C16 |
H16 |
H16B |
120.0 |
120.1 |
| H16A |
C16 |
C15 |
H15 |
55.5 |
303.0 |
| H16 |
C16 |
H16A |
H16B |
240.0 |
240.0 |
| H16B |
C16 |
C15 |
H15 |
175.5 |
63.0 |
| H16 |
C16 |
H16B |
H16A |
120.0 |
120.0 |
| H17 |
C17 |
C15 |
H15 |
64.9 |
306.7 |
| H17A |
C17 |
H17 |
H17B |
120.0 |
119.9 |
| H17A |
C17 |
C15 |
H15 |
184.9 |
66.7 |
| H17 |
C17 |
H17A |
H17B |
240.0 |
240.1 |
| H17B |
C17 |
C15 |
H15 |
304.8 |
186.7 |
| H17 |
C17 |
H17B |
H17A |
120.0 |
119.9 |
| O28 |
C18 |
C14 |
H14 |
42.0 |
224.2 |
| C14 |
C18 |
O28 |
N19 |
179.7 |
180.0 |
| O28 |
C18 |
N19 |
C20 |
347.7 |
5.0 |
| O28 |
C18 |
N19 |
HN19 |
167.7 |
185.0 |
| N19 |
C18 |
C14 |
H14 |
221.6 |
44.2 |
| C20 |
N19 |
C18 |
HN19 |
180.0 |
180.0 |
| C18 |
N19 |
C20 |
C21 |
227.0 |
275.0 |
| C18 |
N19 |
C20 |
H20 |
341.3 |
35.0 |
| C18 |
N19 |
C20 |
HN19 |
180.0 |
180.0 |
| C24 |
C20 |
N19 |
H20 |
106.9 |
120.0 |
| C21 |
C20 |
N19 |
H20 |
245.7 |
240.0 |
| N19 |
C20 |
C21 |
O22 |
349.2 |
360.0 |
| N19 |
C20 |
C21 |
O23 |
169.9 |
180.0 |
| C18 |
N19 |
HN19 |
C20 |
180.0 |
180.0 |
| HN19 |
N19 |
C20 |
C21 |
47.0 |
95.0 |
| HN19 |
N19 |
C20 |
H20 |
161.3 |
215.0 |
| C24 |
C20 |
N19 |
HN19 |
268.2 |
335.0 |
| N19 |
C20 |
C24 |
H20 |
250.5 |
240.0 |
| C21 |
C20 |
C24 |
H20 |
112.9 |
119.9 |
| C24 |
C20 |
C21 |
O23 |
309.9 |
300.0 |
| C21 |
C20 |
N19 |
HN19 |
47.0 |
95.0 |
| N19 |
C20 |
C21 |
H20 |
112.0 |
120.0 |
| C24 |
C20 |
C21 |
H20 |
252.0 |
240.1 |
| O22 |
C21 |
C20 |
O23 |
179.3 |
180.0 |
| C20 |
C21 |
O23 |
HO23 |
179.3 |
180.0 |
| H20 |
C20 |
N19 |
HN19 |
161.3 |
215.0 |
| N19 |
C20 |
H20 |
C21 |
241.6 |
240.0 |
| H20 |
C20 |
C21 |
O22 |
237.2 |
240.0 |
| H20 |
C20 |
C21 |
O23 |
58.0 |
60.0 |
| O22 |
C21 |
C20 |
H20 |
237.2 |
240.0 |
| C20 |
C21 |
O22 |
O23 |
180.8 |
180.0 |
| O22 |
C21 |
O23 |
HO23 |
0.0 |
0.0 |
| O23 |
C21 |
C20 |
H20 |
58.0 |
60.0 |
| C20 |
C21 |
O23 |
O22 |
179.2 |
180.0 |
| C1 |
C31 |
C30 |
H31 |
180.0 |
179.7 |
| C4 |
C30 |
C31 |
H30 |
180.0 |
180.0 |
| C4 |
C30 |
H30 |
C31 |
180.0 |
180.0 |
| H30 |
C30 |
C31 |
H31 |
358.2 |
0.2 |
| H31 |
C31 |
C30 |
H30 |
358.2 |
0.2 |
| C25 |
C24 |
C20 |
H20 |
129.5 |
55.0 |
| H24 |
C24 |
C25 |
H24A |
120.0 |
120.0 |
| H24 |
C24 |
C20 |
H20 |
249.5 |
175.1 |
| C25 |
C24 |
H24 |
H24A |
246.5 |
240.0 |
| H24A |
C24 |
C20 |
H20 |
9.5 |
295.0 |
| C25 |
C24 |
H24A |
H24 |
113.5 |
120.1 |
| C27 |
C25 |
C24 |
H24 |
31.2 |
175.0 |
| C27 |
C25 |
C24 |
H24A |
271.2 |
55.0 |
| C26 |
C25 |
C27 |
H25 |
243.6 |
240.0 |
| C26 |
C25 |
C24 |
H24 |
266.9 |
55.0 |
| C26 |
C25 |
C24 |
H24A |
146.9 |
295.0 |
| C27 |
C25 |
C26 |
H25 |
120.3 |
120.0 |
| H25 |
C25 |
C24 |
H24 |
151.4 |
295.0 |
| H25 |
C25 |
C24 |
H24A |
31.4 |
175.0 |
| H26 |
C26 |
C25 |
H25 |
294.6 |
180.0 |
| H26A |
C26 |
H26 |
H26B |
120.0 |
119.9 |
| H26A |
C26 |
C25 |
H25 |
54.6 |
300.0 |
| H26 |
C26 |
H26A |
H26B |
240.0 |
240.1 |
| H26B |
C26 |
C25 |
H25 |
174.7 |
60.0 |
| H26 |
C26 |
H26B |
H26A |
120.0 |
119.9 |
| H27 |
C27 |
C25 |
H25 |
64.7 |
300.0 |
| H27A |
C27 |
H27 |
H27B |
120.0 |
119.9 |
| H27A |
C27 |
C25 |
H25 |
184.7 |
60.0 |
| H27 |
C27 |
H27A |
H27B |
240.0 |
240.1 |
| H27B |
C27 |
C25 |
H25 |
304.7 |
180.0 |
| H27 |
C27 |
H27B |
H27A |
120.0 |
119.9 |