PDB Chemical Component UB2
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for UB2
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C28 |
C29 |
1.394 |
1.382 |
| C29 |
C1 |
1.412 |
1.383 |
| C29 |
H29 |
1.080 |
1.080 |
| C28 |
C4 |
1.407 |
1.382 |
| C28 |
H28 |
1.080 |
1.080 |
| C5 |
C4 |
1.529 |
1.508 |
| C4 |
C3 |
1.411 |
1.382 |
| O6 |
C5 |
1.432 |
1.451 |
| C5 |
H5 |
1.100 |
1.091 |
| C5 |
H5A |
1.100 |
1.089 |
| C7 |
O6 |
1.340 |
1.347 |
| N8 |
C7 |
1.321 |
1.347 |
| O27 |
C7 |
1.194 |
1.215 |
| C9 |
N8 |
1.417 |
1.465 |
| N8 |
HN8 |
1.000 |
0.971 |
| P10 |
C9 |
1.821 |
1.823 |
| C9 |
H9 |
1.100 |
1.089 |
| C9 |
H9A |
1.100 |
1.090 |
| N13 |
P10 |
1.574 |
1.683 |
| P10 |
O12 |
1.472 |
1.480 |
| P10 |
O11 |
1.509 |
1.611 |
| C14 |
N13 |
1.481 |
1.469 |
| N13 |
HN13 |
1.000 |
1.009 |
| C15 |
C14 |
1.563 |
1.530 |
| C14 |
C16 |
1.527 |
1.506 |
| C14 |
H14 |
1.100 |
1.090 |
| O26 |
C16 |
1.229 |
1.213 |
| C16 |
N17 |
1.367 |
1.348 |
| N17 |
C18 |
1.467 |
1.465 |
| N17 |
HN17 |
1.000 |
0.970 |
| C22 |
C18 |
1.548 |
1.530 |
| C18 |
C19 |
1.501 |
1.507 |
| C18 |
H18 |
1.100 |
1.090 |
| C23 |
C22 |
1.536 |
1.531 |
| C22 |
H22 |
1.100 |
1.089 |
| C22 |
H22A |
1.100 |
1.090 |
| C24 |
C23 |
1.563 |
1.530 |
| C25 |
C23 |
1.546 |
1.531 |
| C23 |
H23 |
1.100 |
1.089 |
| C25 |
H25 |
1.100 |
1.089 |
| C25 |
H25A |
1.100 |
1.090 |
| C25 |
H25B |
1.100 |
1.090 |
| C24 |
H24 |
1.100 |
1.090 |
| C24 |
H24A |
1.100 |
1.090 |
| C24 |
H24B |
1.100 |
1.089 |
| C19 |
O21 |
1.257 |
1.207 |
| C19 |
O20 |
1.258 |
1.343 |
| O20 |
HO20 |
0.950 |
0.967 |
| C15 |
H15 |
1.100 |
1.090 |
| C15 |
H15A |
1.100 |
1.089 |
| C15 |
H15B |
1.100 |
1.090 |
| O11 |
HO11 |
0.950 |
0.967 |
| C3 |
C2 |
1.401 |
1.383 |
| C3 |
H3 |
1.080 |
1.080 |
| C1 |
C2 |
1.409 |
1.382 |
| C2 |
H2 |
1.080 |
1.080 |
| C1 |
H1 |
1.080 |
1.080 |
Bond Angles for UB2
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C29 |
C1 |
H1 |
120.0 |
120.0 |
| C4 |
C3 |
H3 |
119.7 |
120.0 |
| C9 |
N8 |
HN8 |
118.1 |
119.9 |
| P10 |
C9 |
H9 |
108.7 |
109.5 |
| P10 |
C9 |
H9A |
108.2 |
109.4 |
| H9 |
C9 |
H9A |
111.3 |
109.5 |
| O12 |
P10 |
O11 |
111.6 |
109.5 |
| P10 |
O11 |
HO11 |
109.5 |
114.0 |
| C14 |
N13 |
HN13 |
105.1 |
111.0 |
| C15 |
C14 |
H14 |
113.6 |
109.5 |
| C16 |
C14 |
H14 |
107.6 |
109.4 |
| C14 |
C16 |
N17 |
117.1 |
120.0 |
| O26 |
C16 |
N17 |
122.1 |
120.0 |
| C16 |
N17 |
C18 |
119.9 |
120.0 |
| C16 |
N17 |
HN17 |
120.0 |
120.0 |
| C18 |
N17 |
HN17 |
120.1 |
120.0 |
| N17 |
C18 |
C19 |
111.4 |
109.4 |
| N17 |
C18 |
H18 |
107.9 |
109.5 |
| C22 |
C18 |
C19 |
113.9 |
109.5 |
| C22 |
C18 |
H18 |
105.1 |
109.5 |
| C19 |
C18 |
H18 |
105.8 |
109.5 |
| C18 |
C19 |
O21 |
117.6 |
120.1 |
| C18 |
C19 |
O20 |
119.9 |
120.0 |
| C23 |
C22 |
H22 |
106.8 |
109.5 |
| C23 |
C22 |
H22A |
104.9 |
109.4 |
| H22 |
C22 |
H22A |
116.2 |
109.5 |
| C24 |
C23 |
H23 |
111.3 |
109.5 |
| C25 |
C23 |
H23 |
103.9 |
109.5 |
| H25 |
C25 |
H25A |
109.4 |
109.5 |
| H25 |
C25 |
H25B |
109.5 |
109.5 |
| H25A |
C25 |
H25B |
109.5 |
109.4 |
| H24 |
C24 |
H24A |
109.5 |
109.5 |
| H24 |
C24 |
H24B |
109.5 |
109.5 |
| H24A |
C24 |
H24B |
109.5 |
109.5 |
| O21 |
C19 |
O20 |
122.5 |
120.0 |
| C19 |
O20 |
HO20 |
109.5 |
117.0 |
| H15 |
C15 |
H15A |
109.5 |
109.5 |
| H15 |
C15 |
H15B |
109.4 |
109.5 |
| H15A |
C15 |
H15B |
109.5 |
109.5 |
| C2 |
C3 |
H3 |
119.7 |
120.0 |
| C3 |
C2 |
H2 |
120.3 |
120.0 |
| C1 |
C2 |
H2 |
120.3 |
120.0 |
Torsion Angles for UB2
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C28 |
C29 |
C1 |
H1 |
180.0 |
180.0 |
| C29 |
C1 |
C2 |
H2 |
179.5 |
179.9 |
| H29 |
C29 |
C1 |
H1 |
0.0 |
359.9 |
| C28 |
C4 |
C3 |
H3 |
183.4 |
179.7 |
| C5 |
C4 |
C3 |
H3 |
1.0 |
0.2 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
179.8 |
| C4 |
C3 |
C2 |
H2 |
178.7 |
180.3 |
| P10 |
C9 |
N8 |
HN8 |
7.4 |
275.0 |
| H9 |
C9 |
P10 |
H9A |
121.0 |
120.0 |
| H9 |
C9 |
N8 |
HN8 |
127.4 |
35.1 |
| P10 |
C9 |
H9 |
H9A |
241.0 |
240.0 |
| H9A |
C9 |
N8 |
HN8 |
248.4 |
155.1 |
| P10 |
C9 |
H9A |
H9 |
119.3 |
120.0 |
| N13 |
P10 |
C9 |
H9 |
51.2 |
60.0 |
| N13 |
P10 |
C9 |
H9A |
290.2 |
300.0 |
| N13 |
P10 |
O11 |
HO11 |
352.5 |
60.0 |
| O12 |
P10 |
C9 |
H9 |
288.1 |
300.0 |
| O12 |
P10 |
C9 |
H9A |
167.2 |
180.0 |
| O12 |
P10 |
O11 |
HO11 |
117.4 |
180.0 |
| O11 |
P10 |
C9 |
H9 |
165.5 |
180.0 |
| O11 |
P10 |
C9 |
H9A |
44.5 |
60.0 |
| C15 |
C14 |
N13 |
HN13 |
36.1 |
331.0 |
| C16 |
C14 |
C15 |
H14 |
118.9 |
120.0 |
| C15 |
C14 |
C16 |
N17 |
92.1 |
300.0 |
| C16 |
C14 |
N13 |
HN13 |
154.6 |
91.1 |
| C15 |
C14 |
C16 |
H14 |
237.3 |
240.0 |
| O26 |
C16 |
C14 |
N17 |
180.0 |
179.9 |
| C14 |
C16 |
N17 |
C18 |
174.9 |
180.0 |
| C14 |
C16 |
N17 |
HN17 |
354.8 |
359.9 |
| H14 |
C14 |
N13 |
HN13 |
273.5 |
211.1 |
| H14 |
C14 |
C16 |
N17 |
214.8 |
60.0 |
| O26 |
C16 |
C14 |
H14 |
34.8 |
240.0 |
| C14 |
C16 |
O26 |
N17 |
180.0 |
180.1 |
| O26 |
C16 |
N17 |
C18 |
354.9 |
0.1 |
| O26 |
C16 |
N17 |
HN17 |
174.9 |
180.0 |
| N17 |
C16 |
C14 |
H14 |
214.8 |
60.0 |
| C18 |
N17 |
C16 |
HN17 |
180.0 |
180.0 |
| C16 |
N17 |
C18 |
C19 |
217.4 |
275.0 |
| C16 |
N17 |
C18 |
H18 |
333.2 |
35.0 |
| C16 |
N17 |
C18 |
HN17 |
180.0 |
180.0 |
| C22 |
C18 |
N17 |
C19 |
231.0 |
240.0 |
| C22 |
C18 |
N17 |
H18 |
115.2 |
120.1 |
| C19 |
C18 |
N17 |
H18 |
244.2 |
240.0 |
| N17 |
C18 |
C19 |
O21 |
350.9 |
360.0 |
| N17 |
C18 |
C19 |
O20 |
173.3 |
180.0 |
| C16 |
N17 |
HN17 |
C18 |
180.0 |
180.0 |
| HN17 |
N17 |
C18 |
C19 |
37.4 |
95.0 |
| HN17 |
N17 |
C18 |
H18 |
153.2 |
215.0 |
| C22 |
C18 |
N17 |
HN17 |
268.4 |
335.0 |
| N17 |
C18 |
C22 |
C19 |
127.6 |
119.9 |
| N17 |
C18 |
C22 |
H18 |
243.0 |
240.0 |
| C19 |
C18 |
C22 |
H18 |
115.4 |
120.0 |
| C22 |
C18 |
C19 |
O21 |
118.9 |
119.9 |
| C22 |
C18 |
C19 |
O20 |
301.2 |
300.0 |
| C19 |
C18 |
N17 |
HN17 |
37.4 |
95.0 |
| N17 |
C18 |
C19 |
H18 |
117.1 |
120.0 |
| C22 |
C18 |
C19 |
H18 |
245.0 |
240.0 |
| O21 |
C19 |
C18 |
O20 |
177.6 |
180.0 |
| C18 |
C19 |
O20 |
HO20 |
177.5 |
180.0 |
| H18 |
C18 |
N17 |
HN17 |
153.2 |
215.0 |
| N17 |
C18 |
H18 |
C19 |
240.6 |
240.0 |
| C22 |
C18 |
H18 |
C19 |
120.9 |
120.0 |
| H18 |
C18 |
C19 |
O21 |
233.8 |
240.0 |
| H18 |
C18 |
C19 |
O20 |
56.2 |
60.0 |
| C23 |
C22 |
C18 |
C19 |
288.0 |
175.0 |
| C23 |
C22 |
C18 |
H18 |
172.7 |
55.0 |
| H22 |
C22 |
C23 |
H22A |
123.9 |
120.0 |
| H22 |
C22 |
C18 |
C19 |
48.0 |
295.0 |
| H22 |
C22 |
C18 |
H18 |
292.6 |
175.0 |
| C23 |
C22 |
H22 |
H22A |
243.4 |
240.0 |
| H22A |
C22 |
C18 |
C19 |
171.9 |
55.1 |
| H22A |
C22 |
C18 |
H18 |
56.5 |
295.1 |
| C23 |
C22 |
H22A |
H22 |
117.6 |
120.0 |
| C24 |
C23 |
C22 |
H22 |
44.0 |
175.0 |
| C24 |
C23 |
C22 |
H22A |
280.0 |
55.0 |
| C25 |
C23 |
C24 |
H23 |
115.3 |
240.0 |
| C25 |
C23 |
C22 |
H22 |
168.9 |
55.0 |
| C25 |
C23 |
C22 |
H22A |
45.0 |
295.0 |
| C24 |
C23 |
C25 |
H23 |
240.2 |
120.0 |
| H23 |
C23 |
C22 |
H22 |
283.8 |
295.0 |
| H23 |
C23 |
C22 |
H22A |
159.9 |
175.0 |
| H25 |
C25 |
C23 |
H23 |
327.1 |
180.0 |
| H25A |
C25 |
H25 |
H25B |
120.0 |
120.0 |
| H25A |
C25 |
C23 |
H23 |
87.1 |
300.0 |
| H25 |
C25 |
H25A |
H25B |
240.0 |
239.9 |
| H25B |
C25 |
C23 |
H23 |
207.1 |
59.9 |
| H25 |
C25 |
H25B |
H25A |
120.0 |
120.0 |
| H24 |
C24 |
C23 |
H23 |
26.8 |
180.0 |
| H24A |
C24 |
H24 |
H24B |
120.1 |
120.0 |
| H24A |
C24 |
C23 |
H23 |
146.8 |
300.0 |
| H24 |
C24 |
H24A |
H24B |
240.0 |
240.0 |
| H24B |
C24 |
C23 |
H23 |
266.8 |
60.0 |
| H24 |
C24 |
H24B |
H24A |
120.0 |
120.0 |
| O21 |
C19 |
C18 |
H18 |
233.8 |
240.0 |
| C18 |
C19 |
O21 |
O20 |
182.4 |
180.0 |
| O21 |
C19 |
O20 |
HO20 |
0.0 |
0.0 |
| O20 |
C19 |
C18 |
H18 |
56.2 |
60.0 |
| C18 |
C19 |
O20 |
O21 |
177.5 |
180.0 |
| H15 |
C15 |
C14 |
H14 |
98.7 |
300.0 |
| H15A |
C15 |
H15 |
H15B |
120.0 |
120.0 |
| H15A |
C15 |
C14 |
H14 |
218.7 |
60.0 |
| H15 |
C15 |
H15A |
H15B |
240.0 |
240.0 |
| H15B |
C15 |
C14 |
H14 |
338.7 |
180.0 |
| H15 |
C15 |
H15B |
H15A |
120.0 |
120.0 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.2 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
179.9 |
| H3 |
C3 |
C2 |
H2 |
358.7 |
0.1 |
| C1 |
C2 |
C3 |
H3 |
178.8 |
180.0 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
180.1 |
| H2 |
C2 |
C3 |
H3 |
358.7 |
0.1 |
| H1 |
C1 |
C2 |
H2 |
359.6 |
360.0 |