PDB Chemical Component UAR
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for UAR
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OP3 |
P |
1.612 |
1.609 |
| OP3 |
HOP3 |
0.950 |
0.966 |
| P |
OP1 |
1.481 |
1.480 |
| P |
OP2 |
1.482 |
1.609 |
| P |
O5' |
1.613 |
1.610 |
| OP2 |
HOP2 |
0.950 |
0.967 |
| O5' |
C5' |
1.438 |
1.427 |
| C5' |
C4' |
1.529 |
1.530 |
| C5' |
H5' |
1.114 |
1.090 |
| C5' |
H5'' |
1.114 |
1.090 |
| C4' |
O4' |
1.435 |
1.446 |
| C4' |
C3' |
1.523 |
1.544 |
| C4' |
H4' |
1.114 |
1.091 |
| O4' |
C1' |
1.432 |
1.444 |
| C3' |
O3' |
1.438 |
1.430 |
| C3' |
C2' |
1.509 |
1.544 |
| C3' |
H3' |
1.115 |
1.090 |
| O3' |
HO3' |
0.950 |
0.966 |
| C2' |
O2' |
1.436 |
1.428 |
| C2' |
C1' |
1.522 |
1.544 |
| C2' |
H2' |
1.114 |
1.089 |
| O2' |
HO2' |
0.950 |
0.967 |
| C1' |
N1 |
1.481 |
1.465 |
| C1' |
H1' |
1.115 |
1.089 |
| N1 |
C2 |
1.387 |
1.345 |
| N1 |
C6 |
1.369 |
1.368 |
| C2 |
O2 |
1.227 |
1.215 |
| C2 |
N3 |
1.376 |
1.346 |
| N3 |
C4 |
1.378 |
1.348 |
| N3 |
H3 |
1.020 |
0.970 |
| C4 |
O4 |
1.225 |
1.217 |
| C4 |
C5 |
1.442 |
1.416 |
| C5 |
C6 |
1.352 |
1.350 |
| C5 |
H5 |
1.103 |
1.080 |
| C6 |
H6 |
1.103 |
1.080 |
Bond Angles for UAR
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| P |
OP3 |
HOP3 |
108.4 |
106.8 |
| OP3 |
P |
OP1 |
108.4 |
109.4 |
| OP3 |
P |
OP2 |
108.1 |
109.5 |
| OP3 |
P |
O5' |
102.5 |
109.5 |
| OP1 |
P |
OP2 |
120.0 |
109.5 |
| OP1 |
P |
O5' |
108.5 |
109.4 |
| OP2 |
P |
O5' |
107.8 |
109.5 |
| P |
OP2 |
HOP2 |
108.2 |
106.8 |
| P |
O5' |
C5' |
121.2 |
106.8 |
| O5' |
C5' |
C4' |
111.6 |
109.5 |
| O5' |
C5' |
H5' |
111.4 |
109.5 |
| O5' |
C5' |
H5'' |
111.4 |
109.5 |
| C4' |
C5' |
H5' |
111.4 |
109.4 |
| C4' |
C5' |
H5'' |
111.5 |
109.4 |
| C5' |
C4' |
O4' |
111.5 |
110.3 |
| C5' |
C4' |
C3' |
111.4 |
110.7 |
| C5' |
C4' |
H4' |
105.9 |
110.3 |
| H5' |
C5' |
H5'' |
99.0 |
109.5 |
| O4' |
C4' |
C3' |
107.0 |
104.7 |
| O4' |
C4' |
H4' |
110.5 |
110.4 |
| C4' |
O4' |
C1' |
107.3 |
105.3 |
| C3' |
C4' |
H4' |
110.5 |
110.3 |
| C4' |
C3' |
O3' |
110.8 |
110.5 |
| C4' |
C3' |
C2' |
105.2 |
104.2 |
| C4' |
C3' |
H3' |
112.1 |
110.5 |
| O4' |
C1' |
C2' |
106.1 |
104.8 |
| O4' |
C1' |
N1 |
111.2 |
110.4 |
| O4' |
C1' |
H1' |
111.5 |
110.4 |
| O3' |
C3' |
C2' |
111.4 |
110.5 |
| O3' |
C3' |
H3' |
106.0 |
110.4 |
| C3' |
O3' |
HO3' |
110.8 |
106.8 |
| C2' |
C3' |
H3' |
111.5 |
110.5 |
| C3' |
C2' |
O2' |
110.4 |
110.5 |
| C3' |
C2' |
C1' |
105.1 |
104.0 |
| C3' |
C2' |
H2' |
112.3 |
110.5 |
| O2' |
C2' |
C1' |
111.3 |
110.6 |
| O2' |
C2' |
H2' |
106.3 |
110.4 |
| C2' |
O2' |
HO2' |
110.4 |
106.8 |
| C1' |
C2' |
H2' |
111.5 |
110.6 |
| C2' |
C1' |
N1 |
112.0 |
110.4 |
| C2' |
C1' |
H1' |
110.6 |
110.4 |
| N1 |
C1' |
H1' |
105.5 |
110.3 |
| C1' |
N1 |
C2 |
118.1 |
119.7 |
| C1' |
N1 |
C6 |
120.5 |
119.7 |
| C2 |
N1 |
C6 |
121.3 |
120.7 |
| N1 |
C2 |
O2 |
122.8 |
119.5 |
| N1 |
C2 |
N3 |
115.9 |
120.9 |
| N1 |
C6 |
C5 |
121.3 |
119.7 |
| N1 |
C6 |
H6 |
120.0 |
120.2 |
| O2 |
C2 |
N3 |
121.3 |
119.6 |
| C2 |
N3 |
C4 |
126.4 |
120.3 |
| C2 |
N3 |
H3 |
116.7 |
119.8 |
| C4 |
N3 |
H3 |
116.9 |
119.8 |
| N3 |
C4 |
O4 |
120.5 |
120.4 |
| N3 |
C4 |
C5 |
114.2 |
119.4 |
| O4 |
C4 |
C5 |
125.3 |
120.3 |
| C4 |
C5 |
C6 |
120.8 |
119.1 |
| C4 |
C5 |
H5 |
122.9 |
120.4 |
| C6 |
C5 |
H5 |
116.3 |
120.5 |
| C5 |
C6 |
H6 |
118.7 |
120.1 |
Torsion Angles for UAR
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP1 |
P |
OP3 |
OP2 |
131.6 |
240.0 |
| OP1 |
P |
OP3 |
O5' |
245.4 |
119.9 |
| OP2 |
P |
OP3 |
O5' |
113.7 |
239.9 |
| OP3 |
P |
OP2 |
HOP2 |
180.1 |
60.1 |
| OP3 |
P |
O5' |
C5' |
305.1 |
179.9 |
| HOP3 |
OP3 |
P |
OP1 |
180.0 |
300.0 |
| HOP3 |
OP3 |
P |
OP2 |
48.4 |
59.9 |
| HOP3 |
OP3 |
P |
O5' |
294.6 |
180.0 |
| OP1 |
P |
OP3 |
HOP3 |
180.0 |
300.0 |
| OP3 |
P |
OP1 |
OP2 |
235.1 |
119.9 |
| OP3 |
P |
OP1 |
O5' |
110.6 |
240.0 |
| OP2 |
P |
OP1 |
O5' |
235.4 |
120.0 |
| OP1 |
P |
OP2 |
HOP2 |
55.1 |
180.0 |
| OP1 |
P |
O5' |
C5' |
59.6 |
60.0 |
| OP2 |
P |
OP3 |
HOP3 |
48.4 |
59.9 |
| OP3 |
P |
OP2 |
OP1 |
125.0 |
240.1 |
| OP3 |
P |
OP2 |
O5' |
249.9 |
120.1 |
| OP1 |
P |
OP2 |
O5' |
124.9 |
240.0 |
| OP2 |
P |
O5' |
C5' |
191.1 |
300.0 |
| O5' |
P |
OP3 |
HOP3 |
294.6 |
180.0 |
| OP3 |
P |
O5' |
OP1 |
245.5 |
119.9 |
| OP3 |
P |
O5' |
OP2 |
114.0 |
239.9 |
| OP1 |
P |
O5' |
OP2 |
228.5 |
120.0 |
| O5' |
P |
OP2 |
HOP2 |
290.2 |
300.0 |
| P |
O5' |
C5' |
C4' |
161.2 |
180.0 |
| P |
O5' |
C5' |
H5' |
286.5 |
60.0 |
| P |
O5' |
C5' |
H5'' |
35.9 |
300.0 |
| HOP2 |
OP2 |
P |
O5' |
290.2 |
300.0 |
| C4' |
C5' |
O5' |
H5' |
234.8 |
120.0 |
| C4' |
C5' |
O5' |
H5'' |
125.3 |
240.0 |
| O5' |
C5' |
C4' |
O4' |
299.3 |
61.5 |
| O5' |
C5' |
C4' |
C3' |
58.8 |
176.9 |
| O5' |
C5' |
C4' |
H4' |
179.1 |
299.2 |
| H5' |
C5' |
O5' |
H5'' |
250.5 |
120.0 |
| O5' |
C5' |
C4' |
H5' |
125.2 |
240.0 |
| O5' |
C5' |
C4' |
H5'' |
234.8 |
120.1 |
| H5' |
C5' |
C4' |
H5'' |
109.5 |
240.1 |
| O4' |
C4' |
C5' |
C3' |
240.5 |
244.5 |
| O4' |
C4' |
C5' |
H4' |
120.3 |
122.2 |
| C5' |
C4' |
O4' |
C1' |
150.0 |
159.5 |
| C3' |
C4' |
C5' |
H4' |
239.7 |
237.7 |
| C5' |
C4' |
C3' |
O3' |
104.2 |
98.5 |
| C5' |
C4' |
C3' |
C2' |
224.7 |
217.3 |
| C5' |
C4' |
C3' |
H3' |
346.0 |
336.0 |
| O5' |
C5' |
H5' |
C4' |
234.7 |
120.0 |
| O5' |
C5' |
H5' |
H5'' |
117.3 |
239.9 |
| C4' |
C5' |
H5' |
H5'' |
242.6 |
119.9 |
| H5' |
C5' |
C4' |
O4' |
174.1 |
181.5 |
| H5' |
C5' |
C4' |
C3' |
293.5 |
296.9 |
| H5' |
C5' |
C4' |
H4' |
53.8 |
59.3 |
| O5' |
C5' |
H5'' |
C4' |
125.3 |
240.0 |
| O5' |
C5' |
H5'' |
H5' |
242.7 |
120.1 |
| C4' |
C5' |
H5'' |
H5' |
117.3 |
240.1 |
| H5'' |
C5' |
C4' |
O4' |
64.6 |
301.4 |
| H5'' |
C5' |
C4' |
C3' |
184.0 |
56.8 |
| H5'' |
C5' |
C4' |
H4' |
304.3 |
179.2 |
| O4' |
C4' |
C5' |
H5' |
174.1 |
181.5 |
| O4' |
C4' |
C5' |
H5'' |
64.6 |
301.4 |
| C5' |
C4' |
O4' |
C3' |
122.1 |
119.2 |
| C5' |
C4' |
O4' |
H4' |
242.5 |
237.8 |
| C3' |
C4' |
O4' |
H4' |
120.4 |
118.7 |
| O4' |
C4' |
C3' |
O3' |
226.3 |
217.4 |
| O4' |
C4' |
C3' |
C2' |
346.8 |
336.2 |
| O4' |
C4' |
C3' |
H3' |
108.1 |
94.9 |
| C4' |
O4' |
C1' |
C2' |
328.7 |
319.5 |
| C4' |
O4' |
C1' |
N1 |
206.7 |
200.7 |
| C4' |
O4' |
C1' |
H1' |
89.3 |
78.4 |
| C3' |
C4' |
C5' |
H5' |
293.5 |
296.9 |
| C3' |
C4' |
C5' |
H5'' |
184.0 |
56.8 |
| C5' |
C4' |
C3' |
O4' |
237.9 |
241.1 |
| C5' |
C4' |
C3' |
H4' |
117.5 |
122.3 |
| O4' |
C4' |
C3' |
H4' |
239.6 |
241.3 |
| C3' |
C4' |
O4' |
C1' |
27.9 |
40.4 |
| O3' |
C3' |
C4' |
C2' |
239.5 |
241.2 |
| O3' |
C3' |
C4' |
H3' |
118.2 |
122.5 |
| C4' |
C3' |
O3' |
HO3' |
179.9 |
178.1 |
| C2' |
C3' |
C4' |
H3' |
238.7 |
241.3 |
| C4' |
C3' |
C2' |
O2' |
114.7 |
118.7 |
| C4' |
C3' |
C2' |
C1' |
354.7 |
359.9 |
| C4' |
C3' |
C2' |
H2' |
233.2 |
241.2 |
| H4' |
C4' |
C5' |
H5' |
53.8 |
59.3 |
| H4' |
C4' |
C5' |
H5'' |
304.3 |
179.2 |
| C5' |
C4' |
H4' |
O4' |
120.9 |
122.2 |
| C5' |
C4' |
H4' |
C3' |
239.1 |
237.4 |
| O4' |
C4' |
H4' |
C3' |
118.2 |
115.2 |
| H4' |
C4' |
O4' |
C1' |
267.5 |
281.7 |
| H4' |
C4' |
C3' |
O3' |
346.7 |
336.2 |
| H4' |
C4' |
C3' |
C2' |
107.2 |
94.9 |
| H4' |
C4' |
C3' |
H3' |
228.5 |
213.7 |
| C1' |
O4' |
C4' |
C3' |
27.9 |
40.4 |
| C1' |
O4' |
C4' |
H4' |
267.5 |
281.7 |
| C3' |
C2' |
C1' |
O4' |
22.1 |
24.0 |
| O2' |
C2' |
C1' |
O4' |
262.6 |
265.3 |
| O4' |
C1' |
C2' |
H2' |
144.1 |
142.6 |
| C2' |
C1' |
O4' |
N1 |
122.0 |
118.9 |
| C2' |
C1' |
O4' |
H1' |
239.5 |
241.1 |
| N1 |
C1' |
O4' |
H1' |
117.4 |
122.3 |
| O4' |
C1' |
N1 |
C2 |
220.4 |
55.2 |
| O4' |
C1' |
N1 |
C6 |
39.8 |
235.4 |
| O3' |
C3' |
C4' |
H4' |
346.7 |
336.2 |
| C4' |
C3' |
O3' |
C2' |
116.8 |
114.8 |
| C4' |
C3' |
O3' |
H3' |
238.2 |
237.5 |
| C2' |
C3' |
O3' |
H3' |
121.4 |
122.6 |
| O3' |
C3' |
C2' |
O2' |
234.9 |
237.4 |
| O3' |
C3' |
C2' |
C1' |
114.8 |
118.7 |
| O3' |
C3' |
C2' |
H2' |
353.4 |
360.0 |
| C2' |
C3' |
C4' |
H4' |
107.2 |
94.9 |
| C4' |
C3' |
C2' |
O3' |
239.8 |
241.2 |
| C4' |
C3' |
C2' |
H3' |
121.7 |
118.7 |
| O4' |
C1' |
C2' |
C3' |
22.1 |
24.0 |
| O3' |
C3' |
C2' |
H3' |
241.9 |
237.5 |
| C2' |
C3' |
O3' |
HO3' |
63.1 |
63.2 |
| O2' |
C2' |
C3' |
C1' |
120.1 |
118.8 |
| O2' |
C2' |
C3' |
H2' |
241.5 |
237.5 |
| C3' |
C2' |
O2' |
HO2' |
180.0 |
61.4 |
| C1' |
C2' |
C3' |
H2' |
121.4 |
118.7 |
| C3' |
C2' |
C1' |
N1 |
143.7 |
142.9 |
| C3' |
C2' |
C1' |
H1' |
261.1 |
265.1 |
| H3' |
C3' |
C4' |
H4' |
228.5 |
213.7 |
| C4' |
C3' |
H3' |
O3' |
121.0 |
122.6 |
| C4' |
C3' |
H3' |
C2' |
242.3 |
245.2 |
| O3' |
C3' |
H3' |
C2' |
121.3 |
122.6 |
| H3' |
C3' |
O3' |
HO3' |
301.7 |
300.6 |
| H3' |
C3' |
C2' |
O2' |
353.0 |
360.0 |
| H3' |
C3' |
C2' |
C1' |
233.0 |
241.2 |
| H3' |
C3' |
C2' |
H2' |
111.5 |
122.5 |
| HO3' |
O3' |
C3' |
C2' |
63.1 |
63.2 |
| HO3' |
O3' |
C3' |
H3' |
301.7 |
300.6 |
| O4' |
C1' |
C2' |
O2' |
262.6 |
265.3 |
| O2' |
C2' |
C3' |
H3' |
353.0 |
360.0 |
| C3' |
C2' |
O2' |
C1' |
243.7 |
245.3 |
| C3' |
C2' |
O2' |
H2' |
122.1 |
122.6 |
| C1' |
C2' |
O2' |
H2' |
238.4 |
237.3 |
| O2' |
C2' |
C1' |
N1 |
24.2 |
24.2 |
| O2' |
C2' |
C1' |
H1' |
141.6 |
146.4 |
| O4' |
C1' |
C2' |
N1 |
238.5 |
241.1 |
| O4' |
C1' |
C2' |
H1' |
121.1 |
118.9 |
| C1' |
C2' |
C3' |
H3' |
233.0 |
241.2 |
| C3' |
C2' |
C1' |
O2' |
119.5 |
118.7 |
| C3' |
C2' |
C1' |
H2' |
238.0 |
241.4 |
| O2' |
C2' |
C1' |
H2' |
118.5 |
122.7 |
| C1' |
C2' |
O2' |
HO2' |
296.3 |
176.1 |
| N1 |
C1' |
C2' |
H1' |
242.6 |
237.8 |
| C2' |
C1' |
N1 |
C2 |
101.8 |
299.8 |
| C2' |
C1' |
N1 |
C6 |
281.2 |
119.9 |
| H2' |
C2' |
C3' |
H3' |
111.5 |
122.5 |
| C3' |
C2' |
H2' |
O2' |
239.1 |
237.4 |
| C3' |
C2' |
H2' |
C1' |
117.7 |
114.6 |
| O2' |
C2' |
H2' |
C1' |
238.6 |
237.2 |
| H2' |
C2' |
O2' |
HO2' |
57.9 |
298.9 |
| H2' |
C2' |
C1' |
N1 |
265.6 |
261.6 |
| H2' |
C2' |
C1' |
H1' |
23.0 |
23.8 |
| HO2' |
O2' |
C2' |
C1' |
296.3 |
176.1 |
| HO2' |
O2' |
C2' |
H2' |
57.9 |
298.9 |
| O4' |
C1' |
N1 |
C2' |
118.6 |
115.4 |
| O4' |
C1' |
N1 |
H1' |
239.0 |
237.7 |
| N1 |
C1' |
C2' |
H2' |
265.6 |
261.6 |
| C2' |
C1' |
N1 |
H1' |
120.4 |
122.2 |
| C2 |
N1 |
C1' |
C6 |
180.6 |
179.8 |
| C1' |
N1 |
C2 |
O2 |
359.0 |
0.2 |
| C1' |
N1 |
C2 |
N3 |
179.3 |
179.7 |
| C1' |
N1 |
C6 |
C5 |
180.8 |
180.0 |
| C1' |
N1 |
C6 |
H6 |
0.9 |
0.0 |
| O4' |
C1' |
H1' |
C2' |
242.1 |
244.6 |
| O4' |
C1' |
H1' |
N1 |
120.8 |
122.4 |
| H1' |
C1' |
C2' |
H2' |
23.0 |
23.8 |
| C2' |
C1' |
H1' |
N1 |
238.7 |
237.8 |
| H1' |
C1' |
N1 |
C2 |
341.4 |
177.5 |
| H1' |
C1' |
N1 |
C6 |
160.8 |
357.7 |
| C2 |
N1 |
C1' |
H1' |
341.4 |
177.5 |
| C1' |
N1 |
C2 |
C6 |
179.4 |
180.2 |
| C2 |
N1 |
C6 |
C5 |
0.2 |
0.2 |
| C2 |
N1 |
C6 |
H6 |
180.3 |
180.2 |
| O2 |
C2 |
N1 |
N3 |
179.7 |
180.5 |
| N1 |
C2 |
N3 |
C4 |
360.0 |
0.5 |
| N1 |
C2 |
N3 |
H3 |
180.0 |
180.2 |
| C6 |
N1 |
C1' |
H1' |
160.8 |
357.7 |
| C1' |
N1 |
C6 |
C2 |
180.6 |
179.8 |
| C6 |
N1 |
C2 |
O2 |
179.6 |
180.0 |
| C6 |
N1 |
C2 |
N3 |
359.9 |
359.6 |
| C4 |
C5 |
C6 |
N1 |
359.9 |
360.0 |
| N1 |
C6 |
C5 |
H5 |
179.9 |
180.1 |
| C5 |
C6 |
N1 |
H6 |
180.0 |
180.0 |
| O2 |
C2 |
N1 |
C6 |
179.6 |
180.0 |
| N1 |
C2 |
O2 |
N3 |
180.3 |
179.5 |
| O2 |
C2 |
N3 |
C4 |
180.2 |
180.0 |
| O2 |
C2 |
N3 |
H3 |
0.2 |
359.7 |
| N3 |
C2 |
N1 |
C6 |
359.9 |
359.6 |
| N1 |
C2 |
N3 |
O2 |
179.8 |
180.5 |
| C4 |
N3 |
C2 |
H3 |
180.0 |
180.3 |
| C2 |
N3 |
C4 |
O4 |
180.5 |
179.7 |
| C2 |
N3 |
C4 |
C5 |
0.1 |
359.7 |
| C2 |
N3 |
C4 |
H3 |
180.0 |
179.7 |
| O4 |
C4 |
N3 |
C5 |
180.4 |
180.1 |
| N3 |
C4 |
C5 |
C6 |
360.0 |
0.1 |
| N3 |
C4 |
C5 |
H5 |
179.9 |
180.0 |
| C2 |
N3 |
H3 |
C4 |
180.0 |
180.3 |
| H3 |
N3 |
C4 |
O4 |
0.5 |
0.1 |
| H3 |
N3 |
C4 |
C5 |
180.1 |
180.0 |
| O4 |
C4 |
N3 |
H3 |
0.5 |
0.1 |
| N3 |
C4 |
O4 |
C5 |
179.6 |
179.9 |
| O4 |
C4 |
C5 |
C6 |
179.6 |
180.0 |
| O4 |
C4 |
C5 |
H5 |
359.5 |
359.9 |
| N1 |
C6 |
C5 |
C4 |
359.9 |
360.0 |
| C5 |
C4 |
N3 |
H3 |
180.1 |
180.0 |
| N3 |
C4 |
C5 |
O4 |
180.4 |
180.1 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
180.1 |
| C4 |
C5 |
C6 |
H6 |
179.8 |
180.0 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
179.9 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
180.1 |
| H5 |
C5 |
C6 |
H6 |
359.9 |
0.0 |
| N1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
| H6 |
C6 |
C5 |
H5 |
359.9 |
0.0 |