PDB Chemical Component UA2

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for UA2

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C2 N1 1.352 1.321
C2 N3 1.360 1.315
C2 H2 1.080 1.080
C4 N3 1.362 1.336
C4 C5 1.399 1.406
C4 C9 1.404 1.459
C5 C6 1.436 1.399
C5 N7 1.387 1.375
C6 N1 1.346 1.329
C6 N6 1.347 1.386
O5' C5' 1.753 1.429
O5' HO5' 0.949 0.967
C5' C4' 1.503 1.530
C5' H5'1 1.100 1.090
C5' H5'2 1.100 1.089
C4' C3' 1.495 1.543
C4' N4' 1.471 1.485
C4' H4' 1.100 1.090
N4' C1' 1.456 1.486
N4' HN4' 1.000 1.009
C3' O3' 1.437 1.428
C3' C2' 1.547 1.543
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.967
C2' O2' 1.432 1.428
C2' C1' 1.555 1.544
C2' H2' 1.100 1.090
O2' HO2' 0.950 0.967
C1' C9 1.512 1.507
C1' H1' 1.100 1.091
C9 C8 1.384 1.346
C8 N7 1.371 1.364
C8 H8 1.080 1.080
N7 HN7 0.999 0.970
N6 HN61 1.000 0.969
N6 HN62 1.000 0.971

Bond Angles for UA2

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N3 C2 N1 124.6 122.4
N1 C2 H2 117.7 118.8
C2 N1 C6 118.9 121.3
N3 C2 H2 117.7 118.8
C2 N3 C4 117.6 120.4
C5 C4 N3 121.3 119.1
C9 C4 N3 131.2 134.9
C5 C4 C9 107.5 106.0
C4 C5 C6 117.7 118.1
C4 C5 N7 105.6 107.3
C4 C9 C1' 129.6 126.5
C4 C9 C8 109.5 107.1
C6 C5 N7 136.7 134.6
C5 C6 N1 119.9 118.6
C5 C6 N6 124.7 120.7
C5 N7 C8 112.0 109.9
C5 N7 HN7 124.0 125.1
N1 C6 N6 115.4 120.7
C6 N6 HN61 109.5 120.0
C6 N6 HN62 109.5 120.0
C5' O5' HO5' 109.5 114.0
O5' C5' C4' 104.7 109.5
O5' C5' H5'1 110.7 109.5
O5' C5' H5'2 110.7 109.5
C4' C5' H5'1 110.7 109.4
C4' C5' H5'2 110.7 109.5
C5' C4' C3' 108.2 110.4
C5' C4' N4' 115.7 110.4
C5' C4' H4' 108.6 110.3
H5'1 C5' H5'2 109.5 109.4
N4' C4' C3' 106.4 104.6
C3' C4' H4' 108.7 110.4
C4' C3' O3' 100.5 110.3
C4' C3' C2' 104.5 105.1
C4' C3' H3' 112.1 110.3
N4' C4' H4' 109.0 110.5
C4' N4' C1' 117.3 104.2
C4' N4' HN4' 107.5 111.0
C1' N4' HN4' 107.5 111.0
N4' C1' C2' 99.5 104.6
N4' C1' C9 104.4 110.5
N4' C1' H1' 110.9 110.4
O3' C3' C2' 114.7 110.3
O3' C3' H3' 113.0 110.3
C3' O3' HO3' 109.5 114.0
C2' C3' H3' 111.3 110.4
C3' C2' O2' 104.6 110.3
C3' C2' C1' 111.9 105.1
C3' C2' H2' 110.9 110.3
O2' C2' C1' 105.8 110.4
O2' C2' H2' 112.6 110.3
C2' O2' HO2' 109.5 114.0
C1' C2' H2' 110.8 110.4
C2' C1' C9 121.7 110.4
C2' C1' H1' 109.5 110.3
C9 C1' H1' 110.1 110.5
C1' C9 C8 120.8 126.4
C9 C8 N7 105.5 109.8
C9 C8 H8 127.2 125.1
N7 C8 H8 127.3 125.1
C8 N7 HN7 124.0 125.1
HN61 N6 HN62 109.4 120.0

Torsion Angles for UA2

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N3 C2 N1 H2 180.0 179.7
N1 C2 N3 C4 359.8 360.0
C5 C6 N1 C2 357.4 0.0
C2 N1 C6 N6 177.6 179.9
N1 C2 N3 H2 180.0 180.3
N3 C2 N1 C6 1.9 0.0
C5 C4 N3 C2 359.3 360.0
C9 C4 N3 C2 179.4 180.0
N3 C2 H2 N1 180.0 180.2
H2 C2 N1 C6 181.9 180.3
H2 C2 N3 C4 179.8 179.7
C4 N3 C2 N1 359.8 360.0
C4 N3 C2 H2 179.8 179.7
C5 C4 N3 C9 179.9 179.9
N3 C4 C5 C6 360.0 0.1
N3 C4 C5 N7 180.4 180.0
N3 C4 C9 C1' 3.0 360.0
N3 C4 C9 C8 179.2 180.0
C2 N3 C4 C5 359.3 360.0
C9 C4 C5 N3 179.9 180.0
C5 C4 C9 C1' 183.1 180.0
C5 C4 C9 C8 359.3 0.0
C6 C5 C4 N7 179.6 180.1
C4 C5 C6 N1 1.7 359.9
C4 C5 C6 N6 181.5 180.0
C4 C5 N7 C8 0.1 0.1
C4 C5 N7 HN7 180.1 180.0
C2 N3 C4 C9 179.4 180.0
C5 C4 C9 N3 180.1 180.1
C9 C4 C5 C6 179.9 180.0
C9 C4 C5 N7 0.3 359.9
N4' C1' C9 C4 115.7 203.6
C2' C1' C9 C4 4.7 88.4
C4 C9 C1' H1' 234.7 326.0
C1' C9 C4 C8 183.8 180.0
C4 C9 C8 N7 0.7 360.0
C4 C9 C8 H8 180.7 180.0
C2 N1 C6 C5 357.4 0.0
C6 C5 C4 N3 360.0 0.1
C6 C5 C4 C9 179.9 180.0
C4 C5 C6 N7 180.6 179.9
C6 C5 N7 C8 180.7 180.0
C6 C5 N7 HN7 0.7 359.9
N1 C6 C5 N6 180.2 179.9
C5 C6 N6 HN61 180.2 359.9
C5 C6 N6 HN62 300.2 180.0
N7 C5 C4 N3 180.4 180.0
N7 C5 C4 C9 0.3 359.9
C4 C5 N7 C6 179.4 180.1
N7 C5 C6 N1 181.1 180.0
N7 C5 C6 N6 0.9 0.1
C9 C8 N7 C5 359.5 360.0
C5 N7 C8 H8 179.5 180.0
C8 N7 C5 HN7 180.0 180.0
C6 N1 C2 H2 181.9 180.3
N1 C6 C5 N7 181.1 180.0
C5 C6 N1 N6 179.8 180.1
N1 C6 N6 HN61 0.0 180.0
N1 C6 N6 HN62 120.0 0.1
N6 C6 C5 N7 0.9 0.1
C5 C6 N6 N1 180.2 179.9
HN61 N6 C6 HN62 240.0 179.9
C4' C5' O5' H5'1 240.8 240.0
C4' C5' O5' H5'2 119.2 120.0
O5' C5' C4' C3' 96.7 185.0
O5' C5' C4' N4' 337.5 69.8
O5' C5' C4' H4' 214.6 307.4
H5'1 C5' O5' H5'2 238.5 240.0
HO5' O5' C5' C4' 180.0 180.0
HO5' O5' C5' H5'1 299.3 299.9
HO5' O5' C5' H5'2 60.8 59.9
C4' C5' O5' HO5' 180.0 180.0
O5' C5' C4' H5'1 119.2 120.0
O5' C5' C4' H5'2 240.8 240.0
H5'1 C5' C4' H5'2 121.5 120.0
N4' C4' C5' C3' 240.8 244.8
C3' C4' C5' H4' 242.1 237.6
C5' C4' C3' O3' 117.2 98.5
C5' C4' C3' C2' 236.4 217.4
C5' C4' C3' H3' 357.0 336.3
N4' C4' C5' H4' 122.9 122.4
C5' C4' N4' C1' 114.7 158.3
C5' C4' N4' HN4' 235.9 277.8
H5'1 C5' O5' HO5' 299.3 299.9
O5' C5' H5'1 C4' 244.4 240.0
O5' C5' H5'1 H5'2 122.2 120.0
C4' C5' H5'1 H5'2 237.8 240.0
H5'1 C5' C4' C3' 337.5 65.0
H5'1 C5' C4' N4' 218.2 309.8
H5'1 C5' C4' H4' 95.3 187.4
H5'2 C5' O5' HO5' 60.8 59.9
O5' C5' H5'2 C4' 115.6 120.1
O5' C5' H5'2 H5'1 237.8 240.0
C4' C5' H5'2 H5'1 122.2 119.9
H5'2 C5' C4' C3' 215.9 305.0
H5'2 C5' C4' N4' 96.7 189.8
H5'2 C5' C4' H4' 333.8 67.4
C3' C4' C5' H5'1 337.5 65.0
C3' C4' C5' H5'2 215.9 305.0
C5' C4' C3' N4' 235.1 241.2
C5' C4' C3' H4' 117.8 122.3
N4' C4' C3' H4' 242.7 241.1
C3' C4' N4' C1' 354.6 39.5
C3' C4' N4' HN4' 115.7 159.0
O3' C3' C4' C2' 240.8 241.1
O3' C3' C4' H3' 120.3 122.1
C4' C3' O3' HO3' 180.0 180.0
C2' C3' C4' H3' 239.4 241.0
C4' C3' C2' O2' 248.6 241.1
C4' C3' C2' C1' 2.7 0.0
C4' C3' C2' H2' 126.9 119.0
N4' C4' C5' H5'1 218.2 309.8
N4' C4' C5' H5'2 96.7 189.8
C5' C4' N4' C3' 120.2 118.8
C5' C4' N4' H4' 237.3 237.7
C3' C4' N4' H4' 117.1 118.9
N4' C4' C3' O3' 242.1 217.2
N4' C4' C3' C2' 1.3 336.1
N4' C4' C3' H3' 121.9 95.1
C1' N4' C4' HN4' 238.8 240.5
C4' N4' C1' C2' 6.7 320.6
C4' N4' C1' C9 240.3 201.8
C4' N4' C1' H1' 121.8 79.3
H4' C4' C5' H5'1 95.3 187.4
H4' C4' C5' H5'2 333.8 67.4
C5' C4' H4' C3' 242.5 237.6
C5' C4' H4' N4' 126.9 122.4
N4' C4' H4' C3' 115.6 115.3
H4' C4' C3' O3' 359.4 336.1
H4' C4' C3' C2' 118.6 95.0
H4' C4' C3' H3' 239.2 214.0
H4' C4' N4' C1' 237.4 280.6
H4' C4' N4' HN4' 358.6 40.1
C4 C9 C1' N4' 115.7 203.6
C1' N4' C4' C3' 354.6 39.5
C1' N4' C4' H4' 237.4 280.6
C4' N4' C1' HN4' 121.2 119.6
C3' C2' C1' N4' 354.6 23.8
O2' C2' C1' N4' 107.9 142.7
N4' C1' C2' H2' 230.3 264.9
C2' C1' N4' C9 126.4 118.8
C2' C1' N4' H1' 244.8 241.3
C9 C1' N4' H1' 118.5 122.5
N4' C1' C9 C8 299.8 23.6
HN4' N4' C4' C3' 115.7 159.0
HN4' N4' C4' H4' 358.6 40.1
C4' N4' HN4' C1' 232.8 244.6
HN4' N4' C1' C2' 245.5 201.0
HN4' N4' C1' C9 119.1 82.2
HN4' N4' C1' H1' 0.7 319.7
O3' C3' C4' H4' 359.4 336.1
C4' C3' O3' C2' 111.4 115.6
C4' C3' O3' H3' 240.4 237.9
C2' C3' O3' H3' 129.0 122.2
O3' C3' C2' O2' 357.6 359.9
O3' C3' C2' C1' 111.7 118.9
O3' C3' C2' H2' 235.9 237.8
C2' C3' C4' H4' 118.6 95.0
C4' C3' C2' O3' 251.0 241.1
C4' C3' C2' H3' 121.1 118.9
N4' C1' C2' C3' 354.6 23.8
O3' C3' C2' H3' 230.1 237.8
C2' C3' O3' HO3' 68.6 64.4
O2' C2' C3' C1' 245.9 241.0
O2' C2' C3' H2' 121.7 122.1
C3' C2' O2' HO2' 180.0 298.6
C1' C2' C3' H2' 235.8 241.1
C3' C2' C1' C9 108.1 142.6
C3' C2' C1' H1' 238.3 265.0
H3' C3' C4' H4' 239.2 214.0
C4' C3' H3' O3' 112.7 122.1
C4' C3' H3' C2' 243.4 244.3
O3' C3' H3' C2' 130.8 122.2
H3' C3' O3' HO3' 299.6 302.1
H3' C3' C2' O2' 127.5 122.1
H3' C3' C2' C1' 241.6 241.1
H3' C3' C2' H2' 5.8 0.0
HO3' O3' C3' C2' 68.6 64.4
HO3' O3' C3' H3' 299.6 302.1
N4' C1' C2' O2' 107.9 142.7
O2' C2' C3' H3' 127.5 122.1
C3' C2' O2' C1' 118.3 115.7
C3' C2' O2' H2' 239.5 237.9
C1' C2' O2' H2' 121.1 122.2
O2' C2' C1' C9 221.5 261.6
O2' C2' C1' H1' 351.7 24.0
C4 C9 C1' C2' 4.7 88.4
C2' C1' N4' HN4' 245.5 201.0
N4' C1' C2' C9 246.5 241.1
N4' C1' C2' H1' 116.2 118.7
C1' C2' C3' H3' 241.6 241.1
C3' C2' C1' O2' 246.6 241.1
C3' C2' C1' H2' 124.3 118.9
O2' C2' C1' H2' 237.7 237.8
C1' C2' O2' HO2' 61.7 182.9
C9 C1' C2' H1' 229.8 237.6
C2' C1' C9 C8 188.8 268.3
H2' C2' C3' H3' 5.8 0.0
C3' C2' H2' O2' 116.9 122.1
C3' C2' H2' C1' 235.2 244.4
O2' C2' H2' C1' 118.3 122.2
H2' C2' O2' HO2' 300.5 60.7
H2' C2' C1' C9 343.8 23.8
H2' C2' C1' H1' 114.1 146.2
HO2' O2' C2' C1' 61.7 182.9
HO2' O2' C2' H2' 300.5 60.7
C1' C9 C4 N3 3.0 360.0
C4 C9 C1' C8 175.9 180.0
C9 C1' N4' HN4' 119.1 82.2
N4' C1' C9 C2' 111.0 115.2
N4' C1' C9 H1' 241.0 237.6
C9 C1' C2' H2' 343.8 23.8
C2' C1' C9 H1' 130.0 122.3
C1' C9 C8 N7 177.3 180.0
C1' C9 C8 H8 357.3 360.0
H1' C1' N4' HN4' 0.7 319.7
N4' C1' H1' C2' 251.2 244.9
N4' C1' H1' C9 115.0 122.5
H1' C1' C2' H2' 114.1 146.2
C2' C1' H1' C9 223.7 237.6
H1' C1' C9 C8 58.8 146.0
C8 C9 C4 N3 179.2 180.0
C4 C9 C8 C1' 183.4 180.0
C5 N7 C8 C9 359.5 360.0
C8 C9 C1' H1' 58.8 146.0
N7 C8 C9 H8 180.0 180.0
C9 C8 N7 HN7 179.5 180.0
C5 N7 C8 HN7 180.0 180.0
C9 C8 N7 H8 180.0 180.0
C9 C8 H8 N7 180.0 180.0
H8 C8 N7 HN7 359.5 0.0
C5 N7 HN7 C8 180.0 180.0
HN7 N7 C8 H8 359.5 0.0
C6 N6 HN61 HN62 120.0 180.1
C6 N6 HN62 HN61 240.0 179.9