PDB Chemical Component U9K

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for U9K

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N4 C18 1.494 1.468
C18 C17 1.522 1.530
C17 C16 1.527 1.530
C16 C15 1.528 1.530
C8 C9 1.393 1.382
C8 C7 1.369 1.386
C15 C14 1.560 1.530
F1 C7 1.364 1.351
C9 C10 1.402 1.380
C7 C6 1.373 1.382
O2 P1 1.478 1.481
O3 C19 1.206 1.208
C14 P1 1.831 1.834
C14 C19 1.537 1.507
C14 C20 1.541 1.537
C10 C11 1.517 1.506
C10 C5 1.410 1.396
C13 P1 1.813 1.834
C13 C12 1.529 1.538
P1 O1 1.474 1.610
N3 C20 1.497 1.464
N3 C11 1.515 1.469
N3 C12 1.501 1.464
C19 O4 1.227 1.343
C6 C5 1.406 1.396
C5 C4 1.477 1.479
C4 C3 1.372 1.360
C4 N1 1.401 1.377
C1 N1 1.455 1.465
C3 N2 1.374 1.339
N1 C2 1.363 1.351
N2 C2 1.320 1.306
C3 H5 1.080 1.080
N4 H24 1.000 1.009
N4 H25 1.000 1.009
N4 H26 1.000 1.010
C6 H6 1.080 1.079
C9 H8 1.081 1.079
C11 H9 1.100 1.091
C11 H10 1.100 1.091
C12 H12 1.100 1.090
C12 H13 1.100 1.090
C13 H15 1.100 1.090
C13 H14 1.100 1.089
C15 H17 1.100 1.090
C15 H16 1.100 1.090
C16 H19 1.100 1.090
C16 H18 1.100 1.090
C18 H23 1.100 1.090
C18 H22 1.100 1.090
C20 H28 1.100 1.090
C20 H27 1.100 1.090
C1 H1 1.100 1.090
C1 H2 1.100 1.090
C1 H3 1.100 1.089
C2 H4 1.080 1.080
C8 H7 1.080 1.080
N3 H11 1.000 1.010
O1 H29 0.950 0.967
C17 H21 1.100 1.090
C17 H20 1.100 1.090
O4 H30 0.950 0.967

Bond Angles for U9K

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N4 C18 C17 112.8 109.5
C18 N4 H24 109.5 109.4
C18 N4 H25 109.5 109.5
C18 N4 H26 109.5 109.5
N4 C18 H23 108.6 109.5
N4 C18 H22 108.7 109.5
C17 C18 H23 108.6 109.4
C17 C18 H22 108.6 109.5
C18 C17 H21 109.0 109.5
C18 C17 H20 109.0 109.4
C17 C16 H19 108.0 109.5
C17 C16 H18 108.0 109.5
C16 C15 H17 107.1 109.5
C16 C15 H16 107.1 109.5
C8 C9 H8 119.1 120.0
C15 C14 P1 113.4 109.9
C15 C14 C19 106.9 109.9
C15 C14 C20 110.7 110.0
C9 C10 C11 119.9 120.1
C9 C10 C5 118.4 119.9
C10 C9 H8 119.1 119.8
C7 C6 C5 120.0 119.8
C7 C6 H6 120.0 120.2
O3 C19 O4 122.1 120.0
C19 C14 P1 106.4 109.9
C20 C14 P1 112.3 107.1
C13 P1 C14 99.6 106.8
C14 P1 O1 108.3 110.0
C19 C14 C20 106.7 109.9
C14 C19 O4 118.6 120.0
C14 C20 H28 108.8 109.5
C14 C20 H27 108.8 109.4
C11 C10 C5 121.6 120.0
C10 C11 H9 108.4 109.5
C10 C11 H10 108.4 109.5
C6 C5 C10 119.1 119.7
C10 C5 C4 121.7 120.2
C13 P1 O1 105.2 110.0
P1 C13 H15 107.3 109.9
P1 C13 H14 107.3 109.9
C13 C12 H12 109.0 109.5
C13 C12 H13 109.0 109.4
P1 O1 H29 109.5 114.0
N3 C20 H28 108.8 109.4
N3 C20 H27 108.8 109.5
N3 C11 H9 108.4 109.5
N3 C11 H10 108.4 109.4
N3 C12 H12 109.0 109.5
N3 C12 H13 109.0 109.4
C19 O4 H30 109.5 117.0
C6 C5 C4 119.1 120.1
C5 C6 H6 120.0 120.0
C4 C3 H5 124.9 126.1
C1 N1 C2 127.3 126.4
C3 N2 C2 105.9 109.5
N1 C2 N2 112.0 109.0
N1 C2 H4 124.0 125.5
N2 C2 H4 124.0 125.5
H24 N4 H25 109.4 109.5
H24 N4 H26 109.5 109.4
H25 N4 H26 109.4 109.5
H9 C11 H10 109.5 109.4
H12 C12 H13 109.5 109.5
H15 C13 H14 109.5 110.0
H17 C15 H16 109.5 109.5
H19 C16 H18 109.5 109.5
H23 C18 H22 109.5 109.5
H28 C20 H27 109.5 109.4
H1 C1 H2 109.5 109.5
H1 C1 H3 109.4 109.5
H2 C1 H3 109.5 109.5
H21 C17 H20 109.5 109.5

Torsion Angles for U9K

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C17 C18 N4 H23 239.5 240.0
C17 C18 N4 H22 120.5 120.0
N4 C18 C17 H21 197.9 60.0
N4 C18 C17 H20 317.4 300.0
H24 N4 C18 H25 240.0 240.0
H24 N4 C18 H26 120.0 119.9
H25 N4 C18 H26 240.0 240.0
H23 C18 N4 H22 241.0 240.0
C17 C18 N4 H24 180.0 179.9
C17 C18 N4 H25 300.0 300.0
C17 C18 N4 H26 60.0 60.0
N4 C18 C17 H23 120.5 120.0
N4 C18 C17 H22 239.5 240.0
C18 C17 C16 H19 332.6 60.0
C18 C17 C16 H18 90.9 300.0
H23 C18 C17 H22 119.0 120.0
H21 C17 C18 H20 240.5 120.0
N4 C18 C17 C16 77.6 180.0
C17 C16 C15 H17 330.2 65.0
C17 C16 C15 H16 87.5 305.0
H19 C16 C17 H18 241.7 120.0
C16 C15 C14 P1 192.7 292.9
C16 C15 C14 C19 309.6 54.1
C16 C15 C14 C20 65.5 175.2
H17 C15 C16 H16 242.6 120.0
C10 C9 C8 H8 180.0 180.5
C8 C7 C6 H6 180.7 179.7
C19 C14 C15 P1 116.9 121.1
C20 C14 C15 P1 232.8 242.3
C13 P1 C14 C15 276.9 285.1
C15 C14 P1 O1 167.3 165.8
C19 C14 C15 C20 244.1 238.8
C15 C14 C19 O4 137.3 273.9
C15 C14 C20 H28 185.7 180.5
C15 C14 C20 H27 305.0 300.5
F1 C7 C6 H6 359.8 359.7
C8 C9 C10 H8 180.0 179.5
C11 C10 C9 C5 181.9 180.0
C9 C10 C11 H9 186.9 225.3
C9 C10 C11 H10 305.6 345.3
C6 C5 C10 C9 0.6 0.5
C9 C10 C5 C4 182.5 180.5
C7 C6 C5 C10 359.5 359.8
C7 C6 C5 C4 177.6 179.8
C5 C6 C7 H6 180.0 180.3
O2 P1 C13 H15 321.9 76.7
O2 P1 C13 H14 79.6 315.4
O2 P1 O1 H29 360.0 298.7
C14 C19 O3 O4 182.2 180.0
O3 C19 O4 H30 360.0 360.0
C15 C14 P1 C19 117.3 121.1
C15 C14 P1 C20 233.6 240.5
C19 C14 P1 C20 116.4 119.4
P1 C14 C19 O4 258.8 35.0
P1 C14 C20 H28 57.9 61.1
P1 C14 C20 H27 177.1 181.0
C13 P1 C14 O1 109.6 119.4
C14 P1 C13 H15 79.9 196.0
C14 P1 C13 H14 197.5 74.7
C14 P1 O1 H29 228.7 177.3
C15 C14 C19 P1 238.5 238.9
C15 C14 C19 C20 118.5 121.2
O3 C19 C14 O4 177.9 180.0
C20 C14 C19 P1 120.0 117.7
C13 P1 C14 C19 159.6 164.0
C19 C14 P1 O1 50.0 44.7
C19 C14 C20 H28 301.7 301.7
C19 C14 C20 H27 61.0 61.6
C14 C19 O4 H30 177.8 180.0
C15 C14 C20 P1 127.8 119.4
C15 C14 C20 C19 244.0 238.9
C19 C14 C20 P1 243.8 240.6
C13 P1 C14 C20 43.3 44.6
C20 C14 P1 O1 293.7 285.3
C20 C14 C19 O4 18.8 152.7
N3 C20 C14 H28 239.6 240.0
N3 C20 C14 H27 120.4 120.0
H28 C20 C14 H27 240.7 240.1
C9 C10 C11 C5 178.0 180.0
C11 C10 C9 H8 1.0 0.0
C6 C5 C10 C11 178.6 180.5
C11 C10 C5 C4 0.6 0.5
N3 C11 C10 H9 239.4 239.9
N3 C11 C10 H10 120.7 119.9
H9 C11 C10 H10 241.3 240.0
C9 C10 C5 C11 181.9 180.0
C5 C10 C9 H8 179.1 180.0
C5 C10 C11 H9 8.9 45.2
C5 C10 C11 H10 127.6 165.3
C6 C5 C10 C4 178.1 180.0
C10 C5 C6 H6 179.5 180.0
C15 C14 P1 C13 276.9 285.1
C19 C14 P1 C13 159.6 164.0
C20 C14 P1 C13 43.3 44.6
C14 P1 C13 O1 247.9 240.7
P1 C13 C12 H12 174.8 179.0
P1 C13 C12 H13 294.3 299.0
C13 P1 O1 H29 122.9 60.0
H15 C13 P1 H14 242.4 121.3
N3 C12 C13 H12 239.7 240.0
N3 C12 C13 H13 120.3 120.0
H12 C12 C13 H13 240.5 240.0
C13 P1 O1 C14 254.2 242.6
O1 P1 C13 H15 192.0 315.4
O1 P1 C13 H14 309.6 194.1
N3 C20 C14 P1 297.5 301.1
C14 C20 N3 H28 120.4 120.1
C14 C20 N3 H27 239.6 240.0
C20 N3 C11 H9 292.8 54.4
C20 N3 C11 H10 174.1 294.5
C20 N3 C12 H12 174.2 161.8
C20 N3 C12 H13 54.7 41.9
H28 C20 N3 H27 119.3 119.9
C10 C11 N3 H9 120.7 120.1
C10 C11 N3 H10 239.3 240.0
H9 C11 N3 H10 118.7 119.9
C13 C12 N3 H12 120.3 120.0
C13 C12 N3 H13 239.7 240.0
C12 N3 C11 H9 58.0 176.8
C12 N3 C11 H10 299.3 56.8
H12 C12 N3 H13 119.5 120.0
O4 C19 C14 P1 258.8 35.0
O4 C19 C14 C20 18.8 152.7
C9 C10 C5 C6 0.6 0.5
C7 C6 C5 H6 180.0 179.7
C11 C10 C5 C6 178.6 180.5
C10 C5 C6 C4 181.9 180.0
C6 C5 C4 C10 181.9 180.0
C4 C5 C6 H6 357.6 0.0
C5 C4 C3 H5 356.8 0.4
C4 N1 C2 H4 179.7 180.3
C1 N1 C2 N2 179.5 180.0
C1 N1 C2 H4 359.5 0.0
N1 C2 N2 C3 1.1 359.7
C3 N2 C2 H4 181.1 179.6
C3 N2 C2 N1 1.1 359.7
N2 C2 N1 H4 180.0 179.9
N1 C2 N2 H4 180.0 180.1
H5 C3 N2 C2 178.5 179.9
H24 N4 C18 C17 180.0 179.9
C18 N4 H24 H25 120.0 120.0
C18 N4 H24 H26 240.0 240.1
H24 N4 C18 H23 300.5 299.9
H24 N4 C18 H22 59.5 59.9
H25 N4 H24 H26 119.9 120.0
H25 N4 C18 C17 300.0 300.0
C18 N4 H25 H24 240.0 240.0
C18 N4 H25 H26 120.0 120.0
H25 N4 C18 H23 60.5 60.0
H25 N4 C18 H22 179.5 180.0
H24 N4 H25 H26 240.0 240.0
H26 N4 C18 C17 60.0 60.0
C18 N4 H26 H24 120.0 119.9
C18 N4 H26 H25 240.0 239.9
H26 N4 C18 H23 180.5 180.0
H26 N4 C18 H22 299.5 300.0
H24 N4 H26 H25 119.9 120.0
C7 C6 H6 C5 180.0 180.3
H6 C6 C5 C10 179.5 180.0
H6 C6 C5 C4 357.6 0.0
H8 C9 C10 C11 1.0 0.0
H8 C9 C10 C5 179.1 180.0
H9 C11 C10 C5 8.9 45.2
C10 C11 H9 H10 118.0 120.0
N3 C11 H9 H10 242.0 240.1
H10 C11 C10 C5 127.6 165.3
C10 C11 H10 H9 242.0 239.9
N3 C11 H10 H9 118.0 120.0
C13 C12 H12 H13 119.2 120.0
N3 C12 H12 H13 240.8 240.0
C13 C12 H13 H12 240.8 240.0
N3 C12 H13 H12 119.2 120.0
H15 C13 P1 C14 79.9 196.0
H15 C13 P1 O1 192.0 315.4
P1 C13 H15 H14 116.2 238.8
H15 C13 C12 H12 53.7 298.4
H15 C13 C12 H13 173.1 58.3
H14 C13 P1 C14 197.5 74.7
H14 C13 P1 O1 309.6 194.1
P1 C13 H14 H15 243.8 121.2
H14 C13 C12 H12 296.0 59.6
H14 C13 C12 H13 55.5 179.6
C16 C15 H17 H16 115.8 240.0
H17 C15 C14 P1 71.3 53.0
H17 C15 C14 C19 188.3 174.1
H17 C15 C14 C20 304.1 295.2
C16 C15 H16 H17 244.2 120.0
H16 C15 C14 P1 314.0 173.0
H16 C15 C14 C19 70.9 294.1
H16 C15 C14 C20 186.8 55.2
C17 C16 H19 H18 117.4 239.9
H19 C16 C15 H17 209.3 185.0
H19 C16 C15 H16 326.7 65.0
C17 C16 H18 H19 242.6 120.1
H18 C16 C15 H17 91.0 304.9
H18 C16 C15 H16 208.4 185.0
N4 C18 H23 C17 237.0 240.0
H23 C18 N4 H24 300.5 299.9
H23 C18 N4 H25 60.5 60.0
H23 C18 N4 H26 180.5 180.0
N4 C18 H23 H22 118.5 120.0
C17 C18 H23 H22 241.5 240.0
H23 C18 C17 H21 77.4 300.0
H23 C18 C17 H20 196.9 180.0
N4 C18 H22 C17 123.0 120.0
H22 C18 N4 H24 59.5 59.9
H22 C18 N4 H25 179.5 180.0
H22 C18 N4 H26 299.5 300.0
N4 C18 H22 H23 241.5 240.0
C17 C18 H22 H23 118.5 120.0
H22 C18 C17 H21 318.4 180.0
H22 C18 C17 H20 77.9 60.0
H28 C20 C14 P1 57.9 61.1
C14 C20 H28 H27 118.9 119.9
N3 C20 H28 H27 241.2 240.1
H27 C20 C14 P1 177.1 181.0
C14 C20 H27 H28 241.2 240.0
N3 C20 H27 H28 118.8 119.9
H1 C1 N1 C2 0.2 85.0
H2 C1 H1 H3 120.0 120.1
H2 C1 N1 C2 120.2 205.0
H1 C1 H2 H3 240.0 239.9
H3 C1 N1 C2 240.2 325.0
H1 C1 H3 H2 120.0 120.0
N1 C2 H4 N2 180.0 179.9
H7 C8 C9 H8 1.0 359.4
H11 N3 C20 H28 195.7 197.5
H11 N3 C20 H27 76.5 77.6
H11 N3 C11 H9 175.4 295.6
H11 N3 C11 H10 56.7 175.7
H11 N3 C12 H12 290.0 282.4
H11 N3 C12 H13 170.5 162.4
H21 C17 C18 H23 77.4 300.0
H21 C17 C18 H22 318.4 180.0
C18 C17 H21 H20 119.2 240.0
H21 C17 C16 H19 212.3 180.0
H21 C17 C16 H18 330.7 60.0
H20 C17 C18 H23 196.9 180.0
H20 C17 C18 H22 77.9 60.0
C18 C17 H20 H21 240.8 120.0
H20 C17 C16 H19 92.9 300.0
H20 C17 C16 H18 211.2 180.0