PDB Chemical Component U8U

Ideal Model

Chemical Description

Name 5-METHYLAMINOMETHYL-2-THIOURIDINE-5'-MONOPHOSPHATE
Formula C11 H18 N3 O8 P S
Formal charge 0
Molecular weight 383.315 g/mol
Component type RNA LINKING
Nonstandard Parent Id U

Chemical features

Atom count 42
Chiral atom count 4
Chiral atoms C1' C2' C3' C4'
Observed leaving atoms OP3 HO3'
Bond count 43
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5-[(methylamino)methyl]-1-(5-O-phosphono-beta-D-ribofuranosyl)-2-thioxo-2,3-dihydropyrimidin-4(1H)-one
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-3,4-dihydroxy-5-[5-(methylaminomethyl)-4-oxo-2-sulfanylidene-pyrimidin-1-yl]oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CNCC1=CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)C(=S)NC1=O
SMILES (CACTVS) CNCC1=CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)C(=S)NC1=O
Stereo SMILES (OpenEye) CNCC1=CN(C(=S)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O
InChI descriptor InChI=1S/C11H18N3O8PS/c1-12-2-5-3-14(11(24)13-9(5)17)10-8(16)7(15)6(22-10)4-21-23(18,19)20/h3,6-8,10,12,15-16H,2,4H2,1H3,(H,13,17,24)(H2,18,19,20)/t6-,7-,8-,10-/m1/s1
InChIKey descriptor LVNQROXSHGRCLA-FDDDBJFASA-N

Status Information

Last modified 2011-06-04
Created 2000-05-16
Release status REL
Processing site RCSB