PDB Chemical Component U55
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for U55
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N17 |
C11 |
1.378 |
1.386 |
N17 |
H171 |
1.020 |
0.968 |
N17 |
H172 |
1.020 |
0.970 |
C11 |
N12 |
1.361 |
1.331 |
C11 |
C16 |
1.424 |
1.391 |
N12 |
C13 |
1.391 |
1.318 |
C13 |
N14 |
1.341 |
1.317 |
C13 |
H131 |
1.103 |
1.081 |
N14 |
C15 |
1.386 |
1.331 |
C16 |
C15 |
1.403 |
1.392 |
C16 |
H161 |
1.102 |
1.080 |
C15 |
N18 |
1.326 |
1.387 |
N18 |
C01 |
1.337 |
1.398 |
N18 |
H181 |
1.020 |
0.971 |
C01 |
C06 |
1.418 |
1.388 |
C01 |
C02 |
1.411 |
1.389 |
C06 |
C05 |
1.407 |
1.381 |
C06 |
H061 |
1.103 |
1.079 |
C05 |
C04 |
1.419 |
1.382 |
C05 |
H051 |
1.102 |
1.080 |
C02 |
C03 |
1.399 |
1.380 |
C02 |
H021 |
1.103 |
1.080 |
C03 |
C04 |
1.401 |
1.383 |
C03 |
H031 |
1.103 |
1.080 |
C04 |
S07 |
1.725 |
1.762 |
S07 |
O08 |
1.428 |
1.421 |
S07 |
O09 |
1.497 |
1.420 |
S07 |
N10 |
1.596 |
1.655 |
N10 |
H101 |
1.020 |
0.970 |
N10 |
H102 |
1.019 |
0.970 |
Bond Angles for U55
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C11 |
N17 |
H171 |
118.0 |
120.1 |
C11 |
N17 |
H172 |
109.2 |
119.9 |
N17 |
C11 |
N12 |
118.0 |
120.4 |
N17 |
C11 |
C16 |
122.0 |
120.6 |
H171 |
N17 |
H172 |
109.2 |
120.0 |
N12 |
C11 |
C16 |
120.0 |
119.0 |
C11 |
N12 |
C13 |
117.4 |
120.8 |
C11 |
C16 |
C15 |
119.8 |
118.3 |
C11 |
C16 |
H161 |
120.9 |
120.8 |
N12 |
C13 |
N14 |
124.4 |
122.0 |
N12 |
C13 |
H131 |
119.8 |
119.0 |
N14 |
C13 |
H131 |
115.8 |
119.0 |
C13 |
N14 |
C15 |
119.0 |
120.9 |
N14 |
C15 |
C16 |
118.9 |
119.0 |
N14 |
C15 |
N18 |
116.9 |
120.5 |
C15 |
C16 |
H161 |
119.3 |
120.9 |
C16 |
C15 |
N18 |
124.2 |
120.5 |
C15 |
N18 |
C01 |
131.2 |
120.0 |
C15 |
N18 |
H181 |
104.6 |
120.0 |
C01 |
N18 |
H181 |
104.7 |
120.0 |
N18 |
C01 |
C06 |
120.5 |
120.0 |
N18 |
C01 |
C02 |
121.1 |
120.1 |
C06 |
C01 |
C02 |
118.4 |
119.9 |
C01 |
C06 |
C05 |
120.9 |
119.9 |
C01 |
C06 |
H061 |
119.9 |
120.1 |
C01 |
C02 |
C03 |
120.6 |
119.9 |
C01 |
C02 |
H021 |
120.1 |
120.1 |
C05 |
C06 |
H061 |
119.2 |
120.0 |
C06 |
C05 |
C04 |
119.6 |
120.1 |
C06 |
C05 |
H051 |
119.8 |
120.0 |
C04 |
C05 |
H051 |
120.6 |
119.9 |
C05 |
C04 |
C03 |
119.4 |
120.1 |
C05 |
C04 |
S07 |
119.1 |
120.0 |
C03 |
C02 |
H021 |
119.2 |
120.0 |
C02 |
C03 |
C04 |
120.8 |
120.1 |
C02 |
C03 |
H031 |
119.5 |
120.0 |
C04 |
C03 |
H031 |
119.6 |
119.9 |
C03 |
C04 |
S07 |
120.2 |
119.9 |
C04 |
S07 |
O08 |
109.1 |
105.8 |
C04 |
S07 |
O09 |
105.9 |
105.7 |
C04 |
S07 |
N10 |
114.6 |
107.4 |
O08 |
S07 |
O09 |
108.4 |
125.4 |
O08 |
S07 |
N10 |
111.0 |
105.8 |
O09 |
S07 |
N10 |
107.5 |
105.8 |
S07 |
N10 |
H101 |
114.6 |
120.0 |
S07 |
N10 |
H102 |
110.3 |
120.0 |
H101 |
N10 |
H102 |
110.4 |
120.0 |
Torsion Angles for U55
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
H171 |
N17 |
C11 |
H172 |
125.4 |
180.2 |
N12 |
C11 |
N17 |
C16 |
182.1 |
179.7 |
N17 |
C11 |
N12 |
C13 |
175.4 |
179.8 |
N17 |
C11 |
C16 |
C15 |
178.8 |
180.0 |
N17 |
C11 |
C16 |
H161 |
358.7 |
359.9 |
C11 |
N17 |
H171 |
H172 |
234.7 |
179.8 |
H171 |
N17 |
C11 |
N12 |
180.0 |
359.7 |
H171 |
N17 |
C11 |
C16 |
357.9 |
180.0 |
C11 |
N17 |
H172 |
H171 |
130.3 |
180.2 |
H172 |
N17 |
C11 |
N12 |
54.7 |
179.5 |
H172 |
N17 |
C11 |
C16 |
232.5 |
359.8 |
N12 |
C11 |
N17 |
H171 |
180.0 |
359.7 |
N12 |
C11 |
N17 |
H172 |
54.7 |
179.5 |
N17 |
C11 |
N12 |
C16 |
177.9 |
180.3 |
N12 |
C11 |
C16 |
C15 |
356.6 |
0.3 |
N12 |
C11 |
C16 |
H161 |
176.6 |
180.2 |
C11 |
N12 |
C13 |
N14 |
7.8 |
0.5 |
C11 |
N12 |
C13 |
H131 |
187.9 |
180.3 |
C16 |
C11 |
N17 |
H171 |
357.9 |
180.0 |
C16 |
C11 |
N17 |
H172 |
232.5 |
359.8 |
N17 |
C11 |
C16 |
N12 |
182.2 |
179.7 |
C16 |
C11 |
N12 |
C13 |
357.5 |
359.5 |
N14 |
C15 |
C16 |
C11 |
4.5 |
0.0 |
C15 |
C16 |
C11 |
H161 |
180.1 |
180.0 |
C11 |
C16 |
C15 |
N18 |
186.8 |
180.0 |
C13 |
N12 |
C11 |
C16 |
357.5 |
359.5 |
N14 |
C13 |
N12 |
H131 |
179.9 |
180.3 |
N12 |
C13 |
N14 |
C15 |
353.2 |
359.8 |
N12 |
C13 |
N14 |
H131 |
180.1 |
179.7 |
C13 |
N14 |
C15 |
C16 |
0.4 |
360.0 |
C13 |
N14 |
C15 |
N18 |
178.2 |
180.0 |
N12 |
C13 |
H131 |
N14 |
180.0 |
180.3 |
H131 |
C13 |
N14 |
C15 |
173.2 |
180.0 |
C11 |
C16 |
C15 |
N14 |
4.5 |
0.0 |
C15 |
N14 |
C13 |
H131 |
173.2 |
180.0 |
N14 |
C15 |
C16 |
H161 |
184.5 |
180.1 |
C16 |
C15 |
N14 |
N18 |
182.2 |
180.0 |
N14 |
C15 |
N18 |
C01 |
157.8 |
6.0 |
N14 |
C15 |
N18 |
H181 |
32.6 |
186.0 |
C11 |
C16 |
C15 |
H161 |
179.9 |
180.0 |
N14 |
C15 |
C16 |
N18 |
177.7 |
180.0 |
C16 |
C15 |
N18 |
C01 |
335.5 |
186.0 |
C16 |
C15 |
N18 |
H181 |
210.3 |
5.9 |
C11 |
C16 |
H161 |
C15 |
180.1 |
180.0 |
H161 |
C16 |
C15 |
N18 |
6.9 |
0.1 |
N14 |
C15 |
N18 |
C16 |
182.3 |
180.0 |
N18 |
C15 |
C16 |
H161 |
6.9 |
0.1 |
C01 |
N18 |
C15 |
H181 |
125.2 |
180.0 |
C15 |
N18 |
C01 |
C06 |
168.0 |
35.8 |
C15 |
N18 |
C01 |
C02 |
346.7 |
215.4 |
C15 |
N18 |
C01 |
H181 |
234.8 |
180.0 |
C06 |
C01 |
N18 |
C02 |
181.3 |
180.4 |
N18 |
C01 |
C06 |
C05 |
183.6 |
180.0 |
N18 |
C01 |
C06 |
H061 |
3.6 |
359.9 |
N18 |
C01 |
C02 |
C03 |
175.4 |
179.7 |
N18 |
C01 |
C02 |
H021 |
355.4 |
0.4 |
C15 |
N18 |
H181 |
C01 |
140.6 |
180.0 |
H181 |
N18 |
C01 |
C06 |
293.2 |
215.8 |
H181 |
N18 |
C01 |
C02 |
111.9 |
35.4 |
C06 |
C01 |
N18 |
H181 |
293.2 |
215.8 |
N18 |
C01 |
C06 |
C02 |
178.7 |
179.6 |
C06 |
C01 |
C02 |
C03 |
354.2 |
359.3 |
C06 |
C01 |
C02 |
H021 |
174.1 |
180.0 |
C05 |
C06 |
C01 |
H061 |
179.9 |
180.1 |
C01 |
C06 |
C05 |
C04 |
358.4 |
360.0 |
C01 |
C06 |
C05 |
H051 |
178.4 |
179.9 |
C02 |
C01 |
N18 |
H181 |
111.9 |
35.4 |
N18 |
C01 |
C02 |
C06 |
181.3 |
180.4 |
C02 |
C01 |
C06 |
C05 |
4.8 |
0.4 |
C02 |
C01 |
C06 |
H061 |
184.9 |
180.3 |
C03 |
C02 |
C01 |
H021 |
180.0 |
179.3 |
C01 |
C02 |
C03 |
C04 |
3.7 |
0.7 |
C01 |
C02 |
C03 |
H031 |
183.6 |
180.3 |
C05 |
C06 |
C01 |
C02 |
4.8 |
0.4 |
C01 |
C06 |
C05 |
H061 |
180.1 |
179.9 |
C04 |
C05 |
C06 |
H051 |
179.9 |
180.1 |
C06 |
C05 |
C04 |
C03 |
359.4 |
359.9 |
C06 |
C05 |
C04 |
S07 |
192.6 |
180.0 |
H061 |
C06 |
C01 |
C02 |
184.9 |
180.3 |
C01 |
C06 |
H061 |
C05 |
179.9 |
180.1 |
H061 |
C06 |
C05 |
C04 |
178.3 |
180.1 |
H061 |
C06 |
C05 |
H051 |
358.4 |
0.0 |
C04 |
C05 |
C06 |
H061 |
178.3 |
180.1 |
C06 |
C05 |
C04 |
H051 |
180.1 |
179.9 |
C02 |
C03 |
C04 |
C05 |
359.6 |
359.7 |
C05 |
C04 |
C03 |
H031 |
179.7 |
180.0 |
C03 |
C04 |
C05 |
S07 |
166.7 |
179.9 |
C05 |
C04 |
S07 |
O08 |
104.1 |
202.6 |
C05 |
C04 |
S07 |
O09 |
347.6 |
337.3 |
C05 |
C04 |
S07 |
N10 |
229.2 |
90.0 |
H051 |
C05 |
C06 |
H061 |
358.4 |
0.0 |
C06 |
C05 |
H051 |
C04 |
179.9 |
180.1 |
H051 |
C05 |
C04 |
C03 |
179.3 |
180.0 |
H051 |
C05 |
C04 |
S07 |
12.5 |
0.1 |
C01 |
C02 |
C03 |
H021 |
180.0 |
180.7 |
C05 |
C04 |
C03 |
C02 |
359.6 |
359.7 |
C04 |
C03 |
C02 |
H031 |
180.0 |
180.3 |
C02 |
C03 |
C04 |
S07 |
166.2 |
179.7 |
C01 |
C02 |
H021 |
C03 |
180.0 |
179.3 |
H021 |
C02 |
C03 |
C04 |
183.7 |
179.9 |
H021 |
C02 |
C03 |
H031 |
3.7 |
359.6 |
C03 |
C04 |
C05 |
H051 |
179.3 |
180.0 |
C05 |
C04 |
C03 |
S07 |
193.4 |
180.1 |
C04 |
C03 |
C02 |
H021 |
183.7 |
179.9 |
C02 |
C03 |
C04 |
H031 |
180.0 |
179.7 |
C03 |
C04 |
S07 |
O08 |
297.4 |
22.6 |
C03 |
C04 |
S07 |
O09 |
181.0 |
157.4 |
C03 |
C04 |
S07 |
N10 |
62.6 |
270.0 |
H031 |
C03 |
C02 |
H021 |
3.7 |
359.6 |
C02 |
C03 |
H031 |
C04 |
180.0 |
180.3 |
H031 |
C03 |
C04 |
S07 |
346.3 |
360.0 |
S07 |
C04 |
C05 |
H051 |
12.5 |
0.1 |
C05 |
C04 |
S07 |
C03 |
166.6 |
179.9 |
S07 |
C04 |
C03 |
H031 |
346.3 |
360.0 |
O08 |
S07 |
C04 |
O09 |
116.5 |
225.2 |
O08 |
S07 |
C04 |
N10 |
234.8 |
112.6 |
O09 |
S07 |
C04 |
N10 |
118.4 |
247.4 |
C04 |
S07 |
N10 |
H101 |
180.0 |
180.0 |
C04 |
S07 |
N10 |
H102 |
54.7 |
360.0 |
C04 |
S07 |
O08 |
O09 |
245.1 |
123.1 |
C04 |
S07 |
O08 |
N10 |
127.2 |
246.2 |
O09 |
S07 |
O08 |
N10 |
242.1 |
123.1 |
O08 |
S07 |
N10 |
H101 |
304.2 |
67.4 |
O08 |
S07 |
N10 |
H102 |
178.9 |
247.4 |
C04 |
S07 |
O09 |
O08 |
117.0 |
236.9 |
C04 |
S07 |
O09 |
N10 |
237.0 |
113.8 |
O08 |
S07 |
O09 |
N10 |
120.1 |
236.9 |
O09 |
S07 |
N10 |
H101 |
62.6 |
292.6 |
O09 |
S07 |
N10 |
H102 |
297.3 |
112.6 |
C04 |
S07 |
N10 |
O08 |
235.9 |
112.6 |
C04 |
S07 |
N10 |
O09 |
117.4 |
247.4 |
O08 |
S07 |
N10 |
O09 |
241.6 |
134.8 |
H101 |
N10 |
S07 |
H102 |
125.3 |
180.0 |
S07 |
N10 |
H101 |
H102 |
234.7 |
180.0 |
S07 |
N10 |
H102 |
H101 |
127.7 |
180.0 |