Atom Nomenclature for U4W

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for U4W

Atom Name (V3) Atom Name (V2)
F40 F40
C35 C35
C36 C36
C37 C37
F39 F39
C38 C38
C34 C34
C33 C33
C32 C32
C26 C26
C27 C27
C28 C28
C29 C29
N30 N30
N31 N31
C25 C25
C24 C24
C23 C23
N22 N22
C21 C21
O41 O41
C9 C9
C8 C8
N7 N7
C6 C6
C1 C1
C2 C2
C3 C3
O42 O42
C4 C4
C5 C5
C13 C13
C12 C12
C11 C11
C10 C10
N14 N14
C15 C15
C16 C16
N17 N17
C20 C20
C18 C18
C19 C19
H36 H36
H34 H34
H38 H38
H321 H321
H322 H322
H27 H27
H25 H25
H28 H28
H30 H30
H22 H22
H10 H10
H7 H7
H13 H13
H6 H6
H11C H11C
H12C H12C
H51C H51C
H52C H52C
H21C H21C
H22C H22C
H3 H3
H42 H42
H41C H41C
H42C H42C
H11 H11
H151 H151
H152 H152
H191 H191
H192 H192
H161 H161
H162 H162
H201 H201
H202 H202
H203 H203
H181 H181
H182 H182