PDB Chemical Component U4S

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for U4S

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C4 C5 1.389 1.416
C4 N3 1.400 1.349
C4 O4 1.229 1.217
C5 C6 1.394 1.350
C6 N1 1.414 1.368
N1 C1' 1.503 1.465
N1 C2 1.398 1.346
N3 C2 1.402 1.345
CAJ CAH 1.524 1.544
CAJ NAT 1.476 1.486
C5' C4' 1.539 1.530
C5' NAT 1.468 1.469
C4' O4' 1.461 1.437
C4' C3' 1.503 1.549
O4' C1' 1.453 1.432
C3' O3' 1.420 1.429
C3' C2' 1.509 1.553
C2' O2' 1.424 1.429
C2' C1' 1.548 1.544
C2 O2 1.228 1.216
CAI CAG 1.531 1.544
CAI NAT 1.481 1.485
CAG CAH 1.518 1.543
C5 H5 1.080 1.080
C6 H6 1.080 1.080
N3 HN3 1.000 0.970
CAJ HAJ 1.100 1.090
CAJ HAJA 1.100 1.091
C5' H5' 1.100 1.090
C5' H5'A 1.100 1.090
C4' H4' 1.100 1.090
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.968
C2' H2' 1.100 1.090
O2' HO2' 0.950 0.967
C1' H1' 1.100 1.090
CAI HAI 1.100 1.090
CAI HAIA 1.100 1.090
CAG HAG 1.100 1.090
CAG HAGA 1.100 1.090
CAH HAH 1.100 1.090
CAH HAHA 1.100 1.089

Bond Angles for U4S

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C5 C4 N3 120.1 119.3
C5 C4 O4 120.5 120.4
C4 C5 C6 119.3 119.1
C4 C5 H5 120.4 120.4
N3 C4 O4 119.4 120.3
C4 N3 C2 120.9 120.3
C4 N3 HN3 119.6 119.8
C5 C6 N1 121.2 119.7
C6 C5 H5 120.3 120.5
C5 C6 H6 119.4 120.2
C6 N1 C1' 121.2 119.7
C6 N1 C2 119.1 120.6
N1 C6 H6 119.4 120.1
C1' N1 C2 119.7 119.7
N1 C1' O4' 109.3 109.8
N1 C1' C2' 116.8 109.8
N1 C1' H1' 103.2 109.8
N1 C2 N3 119.4 120.9
N1 C2 O2 120.7 119.5
N3 C2 O2 119.9 119.6
C2 N3 HN3 119.6 119.9
CAH CAJ NAT 104.9 104.6
CAJ CAH CAG 101.3 105.1
CAH CAJ HAJ 111.0 110.4
CAH CAJ HAJA 112.0 110.4
CAJ CAH HAH 112.3 110.3
CAJ CAH HAHA 114.0 110.3
CAJ NAT C5' 108.3 111.0
CAJ NAT CAI 106.9 104.2
NAT CAJ HAJ 111.0 110.4
NAT CAJ HAJA 112.0 110.4
C4' C5' NAT 112.2 109.5
C5' C4' O4' 117.9 110.3
C5' C4' C3' 110.1 110.3
C4' C5' H5' 108.6 109.5
C4' C5' H5'A 107.9 109.5
C5' C4' H4' 100.6 110.3
C5' NAT CAI 107.5 111.0
NAT C5' H5' 108.6 109.5
NAT C5' H5'A 107.9 109.4
O4' C4' C3' 99.7 105.1
C4' O4' C1' 103.4 110.0
O4' C4' H4' 110.9 110.3
C4' C3' O3' 113.3 111.1
C4' C3' C2' 100.7 100.9
C3' C4' H4' 118.6 110.5
C4' C3' H3' 112.6 111.1
O4' C1' C2' 105.1 107.6
O4' C1' H1' 115.3 109.9
O3' C3' C2' 109.1 111.1
O3' C3' H3' 104.7 111.0
C3' O3' HO3' 109.5 113.9
C3' C2' O2' 103.7 110.9
C3' C2' C1' 102.9 102.3
C2' C3' H3' 116.6 111.2
C3' C2' H2' 117.5 110.9
O2' C2' C1' 110.9 110.8
O2' C2' H2' 110.3 110.7
C2' O2' HO2' 109.5 114.0
C1' C2' H2' 111.1 111.0
C2' C1' H1' 107.5 109.9
CAG CAI NAT 106.7 104.6
CAI CAG CAH 102.1 105.0
CAG CAI HAI 110.4 110.4
CAG CAI HAIA 111.0 110.4
CAI CAG HAG 112.0 110.3
CAI CAG HAGA 113.5 110.3
NAT CAI HAI 110.4 110.4
NAT CAI HAIA 111.0 110.4
CAH CAG HAG 112.0 110.3
CAH CAG HAGA 113.6 110.3
CAG CAH HAH 112.3 110.3
CAG CAH HAHA 114.0 110.3
HAJ CAJ HAJA 106.0 110.4
H5' C5' H5'A 111.7 109.5
HAI CAI HAIA 107.4 110.4
HAG CAG HAGA 103.9 110.4
HAH CAH HAHA 103.4 110.4

Torsion Angles for U4S

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N3 C4 C5 O4 180.3 180.4
C5 C4 N3 C2 359.6 360.0
C5 C4 N3 HN3 179.6 179.9
C4 C5 C6 N1 0.9 359.9
C6 C5 C4 H5 180.0 180.1
C4 C5 C6 H6 180.9 179.9
C5 C4 N3 O4 179.7 179.6
N3 C4 C5 C6 359.9 0.1
N3 C4 C5 H5 179.9 179.9
N1 C2 N3 C4 0.1 359.9
C4 N3 C2 O2 180.6 180.0
C2 N3 C4 HN3 180.0 180.1
C5 C4 O4 N3 180.3 180.4
O4 C4 C5 C6 179.6 179.7
O4 C4 C5 H5 359.6 359.6
O4 C4 N3 C2 179.9 180.3
O4 C4 N3 HN3 359.9 0.3
C6 C5 C4 N3 359.9 0.1
C6 C5 C4 O4 179.6 179.7
C4 C5 C6 H5 180.0 179.9
C5 C6 N1 C1' 180.8 180.0
C5 C6 N1 C2 358.8 360.0
N1 C6 C5 H6 180.0 180.0
N1 C6 C5 H5 180.9 180.1
C5 C6 N1 H6 180.0 180.0
C1' N1 C6 C2 182.0 180.1
C6 N1 C1' O4' 11.9 233.5
C6 N1 C1' C2' 252.8 115.4
C6 N1 C1' H1' 135.0 354.5
C6 N1 C2 N3 0.6 0.1
C6 N1 C2 O2 180.1 180.0
C6 N1 C1' C2 178.0 179.9
C1' N1 C6 H6 0.8 0.0
C1' N1 C2 N3 178.7 180.0
C1' N1 C2 O2 358.2 359.9
C4' O4' C1' N1 263.5 242.2
O4' C1' N1 C2' 119.1 118.1
O4' C1' N1 H1' 236.8 239.1
C3' C2' C1' N1 123.5 140.9
O2' C2' C1' N1 233.9 259.1
N1 C1' C2' H2' 357.0 22.6
C2' C1' N1 H1' 117.7 121.0
C4 N3 C2 N1 0.1 359.9
C6 N1 C2 C1' 181.9 180.1
C2 N1 C6 H6 178.8 180.0
C2 N1 C1' O4' 193.9 53.6
C2 N1 C1' C2' 74.8 295.5
C2 N1 C1' H1' 317.0 174.5
N3 C2 N1 O2 180.5 180.1
N1 C2 N3 HN3 180.1 180.0
C2 N3 C4 O4 179.9 180.3
C4 N3 C2 HN3 180.0 179.9
N1 C2 N3 O2 179.5 179.9
CAH CAJ NAT C5' 138.5 159.0
CAH CAJ NAT CAI 22.9 39.5
NAT CAJ CAH HAJ 240.0 241.2
NAT CAJ CAH HAJA 121.7 118.8
CAI CAG CAH CAJ 40.5 360.0
CAJ CAH CAG HAG 280.5 241.1
CAJ CAH CAG HAGA 163.2 118.9
CAG CAH CAJ HAH 240.0 241.1
CAG CAH CAJ HAHA 122.9 118.9
HAJ CAJ CAH HAJA 241.7 237.6
HAH CAH CAJ HAHA 242.8 237.8
NAT CAJ CAH CAG 320.1 336.1
CAH CAJ NAT HAJ 120.0 118.8
CAH CAJ NAT HAJA 238.3 241.2
NAT CAJ CAH HAH 80.1 95.0
NAT CAJ CAH HAHA 197.3 217.2
C4' C5' NAT CAJ 106.4 170.1
C5' NAT CAJ CAI 115.6 119.6
CAJ NAT C5' H5' 346.4 50.0
CAJ NAT C5' H5'A 225.2 290.0
CAG CAI NAT CAJ 3.1 320.5
CAJ NAT CAI HAI 243.1 201.7
CAJ NAT CAI HAIA 124.1 79.3
HAJ CAJ NAT HAJA 118.3 122.4
CAJ NAT C5' C4' 106.4 170.1
C4' C5' NAT CAI 221.6 285.4
NAT C5' C4' H5' 240.0 240.0
NAT C5' C4' H5'A 118.8 120.0
O4' C4' C5' C3' 113.4 115.6
C5' C4' O4' C1' 190.8 216.7
O4' C4' C5' H4' 239.4 238.0
C5' C4' C3' O3' 291.6 273.2
C5' C4' C3' C2' 175.2 155.3
C3' C4' C5' H4' 125.9 122.3
C5' C4' C3' H3' 50.3 37.3
H5' C5' C4' H5'A 238.8 240.0
CAJ NAT C5' CAI 244.8 244.6
C5' NAT CAJ HAJ 18.4 40.2
C5' NAT CAJ HAJA 260.2 277.8
NAT C5' C4' O4' 331.0 298.5
NAT C5' C4' C3' 217.5 182.9
C4' C5' NAT H5' 120.0 120.1
C4' C5' NAT H5'A 241.2 240.0
NAT C5' C4' H4' 91.6 60.6
CAG CAI NAT C5' 247.0 200.9
C5' NAT CAI HAI 127.0 82.1
C5' NAT CAI HAIA 8.1 319.8
H5' C5' NAT H5'A 121.2 120.0
N1 C1' O4' C4' 263.5 242.2
O4' C4' C5' NAT 331.0 298.5
C5' C4' O4' C3' 240.9 241.1
O4' C4' C5' H5' 91.0 58.5
O4' C4' C5' H5'A 212.2 178.6
C5' C4' O4' H4' 115.2 122.1
O4' C4' C3' O3' 167.0 154.4
O4' C4' C3' C2' 50.6 36.5
C3' C4' O4' H4' 234.2 241.0
O4' C4' C3' H3' 285.6 278.5
C4' O4' C1' C2' 29.6 1.7
C4' O4' C1' H1' 147.8 121.3
C3' C4' C5' NAT 217.5 182.9
C5' C4' C3' O4' 124.7 118.9
C3' C4' C5' H5' 337.5 302.9
C3' C4' C5' H5'A 98.7 62.9
C5' C4' C3' H4' 245.0 237.8
C3' C4' O4' C1' 309.9 335.5
O4' C4' C3' H4' 120.3 118.9
O3' C3' C4' C2' 116.4 117.9
O3' C3' C4' H3' 241.3 235.9
C4' C3' O3' HO3' 345.6 180.0
C4' C3' C2' O2' 212.4 207.7
C4' C3' C2' C1' 328.1 325.8
C2' C3' C4' H3' 124.9 118.0
C4' C3' C2' H2' 90.4 84.2
O4' C1' N1 C2 193.9 53.6
N1 C1' O4' C2' 233.9 240.5
N1 C1' O4' H1' 115.7 120.9
C1' O4' C4' C3' 309.9 335.5
C1' O4' C4' H4' 75.6 94.6
C3' C2' C1' O4' 2.3 21.4
O2' C2' C1' O4' 112.6 139.6
O4' C1' C2' H2' 235.7 263.0
C2' C1' O4' H1' 241.8 240.4
C4' C3' O3' C2' 248.7 248.5
O3' C3' C4' H4' 46.6 35.5
C4' C3' O3' H3' 123.1 124.2
O3' C3' C2' O2' 93.0 89.8
O3' C3' C2' C1' 208.6 208.0
C2' C3' O3' H3' 234.4 235.7
O3' C3' C2' H2' 330.9 326.4
N1 C1' C2' C3' 123.5 140.9
C4' C3' C2' O3' 119.5 117.8
C2' C3' C4' H4' 290.2 277.6
C4' C3' C2' H3' 237.8 242.0
O4' C1' C2' C3' 2.3 21.4
O3' C3' C2' H3' 118.4 124.2
C2' C3' O3' HO3' 96.9 291.5
O2' C2' C3' C1' 244.4 241.8
O2' C2' C3' H2' 122.0 123.4
C3' C2' O2' HO2' 308.6 298.6
C1' C2' C3' H2' 237.7 241.6
C3' C2' C1' H1' 238.9 261.8
N1 C1' C2' O2' 233.9 259.1
O4' C1' C2' O2' 112.6 139.6
C3' C2' O2' C1' 109.8 112.8
O2' C2' C3' H3' 334.6 325.6
C3' C2' O2' H2' 233.3 236.5
C1' C2' O2' H2' 123.5 123.7
O2' C2' C1' H1' 349.3 20.0
C2' C1' N1 C2 74.8 295.5
N1 C1' C2' O4' 121.3 119.5
N1 C1' C2' H1' 244.6 239.1
O4' C1' C2' H1' 123.3 119.6
C3' C2' C1' O2' 249.6 241.8
C1' C2' C3' H3' 90.3 83.8
C3' C2' C1' H2' 126.6 118.3
O2' C2' C1' H2' 236.9 236.5
C1' C2' O2' HO2' 198.8 185.8
N1 C2 O2 N3 180.5 180.1
O2 C2 N3 HN3 0.6 0.1
CAJ CAH CAG CAI 40.5 360.0
CAJ NAT CAI CAG 3.1 320.5
C5' NAT CAI CAG 247.0 200.9
NAT CAI CAG HAI 240.0 241.2
NAT CAI CAG HAIA 121.0 118.8
CAH CAG CAI HAG 240.0 241.1
CAH CAG CAI HAGA 122.7 118.9
CAI CAG CAH HAH 280.6 241.1
CAI CAG CAH HAHA 163.4 118.9
HAI CAI CAG HAIA 241.0 237.6
HAG CAG CAI HAGA 242.6 237.8
CAJ NAT CAI C5' 116.1 119.6
CAI NAT CAJ HAJ 262.9 280.7
CAI NAT CAJ HAJA 144.6 158.3
CAI NAT C5' H5' 101.6 165.4
CAI NAT C5' H5'A 340.4 45.4
NAT CAI CAG CAH 332.3 23.9
CAG CAI NAT HAI 120.0 118.8
CAG CAI NAT HAIA 239.0 241.2
NAT CAI CAG HAG 92.3 142.8
NAT CAI CAG HAGA 209.6 265.0
HAI CAI NAT HAIA 119.0 122.4
CAG CAH CAJ NAT 320.1 336.1
CAG CAH CAJ HAJ 80.1 94.9
CAG CAH CAJ HAJA 198.4 217.4
CAJ CAH CAG HAH 120.0 118.9
CAJ CAH CAG HAHA 237.1 241.1
CAH CAG CAI NAT 332.3 23.9
CAH CAG CAI HAI 92.3 142.7
CAH CAG CAI HAIA 211.3 265.1
CAI CAG CAH HAG 120.0 118.9
CAI CAG CAH HAGA 237.4 241.1
HAG CAG CAH HAGA 117.3 122.2
HAH CAH CAG HAHA 117.1 122.2
H5 C5 C4 N3 179.9 179.9
H5 C5 C4 O4 359.6 359.6
C4 C5 H5 C6 180.0 180.1
H5 C5 C6 N1 180.9 180.1
H5 C5 C6 H6 0.9 0.1
C5 C6 H6 N1 180.0 180.0
H6 C6 C5 H5 0.9 0.1
H6 C6 N1 C1' 0.8 0.0
H6 C6 N1 C2 178.8 180.0
HN3 N3 C4 O4 359.9 0.3
C4 N3 HN3 C2 180.0 180.1
HN3 N3 C2 O2 0.6 0.1
CAH CAJ HAJ NAT 243.7 244.8
HAJ CAJ CAH CAG 80.1 94.9
CAH CAJ HAJ HAJA 121.8 122.4
HAJ CAJ CAH HAH 200.1 213.8
HAJ CAJ CAH HAHA 317.3 336.0
HAJ CAJ NAT C5' 18.4 40.2
HAJ CAJ NAT CAI 262.9 280.7
NAT CAJ HAJ HAJA 238.1 237.6
CAH CAJ HAJA NAT 117.6 115.2
HAJA CAJ CAH CAG 198.4 217.4
CAH CAJ HAJA HAJ 238.8 237.6
HAJA CAJ CAH HAH 318.4 336.2
HAJA CAJ CAH HAHA 75.5 98.5
HAJA CAJ NAT C5' 260.2 277.8
HAJA CAJ NAT CAI 144.6 158.3
NAT CAJ HAJA HAJ 121.2 122.4
C4' C5' H5' NAT 237.8 240.0
H5' C5' C4' O4' 91.0 58.5
H5' C5' C4' C3' 337.5 302.9
C4' C5' H5' H5'A 118.9 120.0
H5' C5' C4' H4' 211.6 180.6
H5' C5' NAT CAI 101.6 165.4
NAT C5' H5' H5'A 241.1 240.1
C4' C5' H5'A NAT 121.5 120.0
H5'A C5' C4' O4' 212.2 178.6
H5'A C5' C4' C3' 98.7 62.9
C4' C5' H5'A H5' 240.7 240.0
H5'A C5' C4' H4' 332.8 300.6
H5'A C5' NAT CAI 340.4 45.4
NAT C5' H5'A H5' 119.3 120.0
H4' C4' C5' NAT 91.6 60.6
C5' C4' H4' O4' 234.4 237.9
C5' C4' H4' C3' 120.0 122.2
H4' C4' C5' H5' 211.6 180.6
H4' C4' C5' H5'A 332.8 300.6
O4' C4' H4' C3' 245.6 244.3
H4' C4' O4' C1' 75.6 94.6
H4' C4' C3' O3' 46.6 35.5
H4' C4' C3' C2' 290.2 277.6
H4' C4' C3' H3' 165.3 159.6
C4' C3' H3' O3' 236.4 235.9
C4' C3' H3' C2' 115.7 111.6
H3' C3' C4' H4' 165.3 159.6
O3' C3' H3' C2' 239.3 235.7
H3' C3' O3' HO3' 222.4 55.8
H3' C3' C2' O2' 334.6 325.6
H3' C3' C2' C1' 90.3 83.8
H3' C3' C2' H2' 212.6 202.2
HO3' O3' C3' C2' 96.9 291.5
HO3' O3' C3' H3' 222.4 55.8
C3' C2' H2' O2' 118.5 123.5
C3' C2' H2' C1' 241.9 247.0
H2' C2' C3' H3' 212.6 202.2
O2' C2' H2' C1' 123.4 123.5
H2' C2' O2' HO2' 75.3 62.1
H2' C2' C1' H1' 112.3 143.4
HO2' O2' C2' C1' 198.8 185.8
HO2' O2' C2' H2' 75.3 62.1
H1' C1' N1 C2 317.0 174.5
N1 C1' H1' O4' 240.9 239.1
N1 C1' H1' C2' 124.1 120.9
O4' C1' H1' C2' 243.1 241.8
H1' C1' C2' H2' 112.3 143.4
CAG CAI HAI NAT 242.2 244.8
HAI CAI CAG CAH 92.3 142.7
CAG CAI HAI HAIA 121.1 122.4
HAI CAI CAG HAG 212.3 261.6
HAI CAI CAG HAGA 329.6 23.8
NAT CAI HAI HAIA 238.9 237.6
CAG CAI HAIA NAT 118.5 115.2
HAIA CAI CAG CAH 211.3 265.1
CAG CAI HAIA HAI 239.2 237.6
HAIA CAI CAG HAG 331.3 24.0
HAIA CAI CAG HAGA 88.6 146.2
NAT CAI HAIA HAI 120.7 122.4
HAG CAG CAI NAT 92.3 142.8
CAI CAG HAG CAH 246.0 244.4
HAG CAG CAI HAI 212.3 261.6
HAG CAG CAI HAIA 331.3 24.0
CAI CAG HAG HAGA 123.0 122.2
CAH CAG HAG HAGA 237.0 237.8
HAG CAG CAH HAH 160.5 122.2
HAG CAG CAH HAHA 43.4 0.0
HAGA CAG CAI NAT 209.6 265.0
CAI CAG HAGA CAH 116.1 115.6
HAGA CAG CAI HAI 329.6 23.8
HAGA CAG CAI HAIA 88.6 146.2
CAI CAG HAGA HAG 238.0 237.8
CAH CAG HAGA HAG 121.9 122.2
HAGA CAG CAH HAH 43.2 360.0
HAGA CAG CAH HAHA 286.1 237.8
HAH CAH CAJ NAT 80.1 95.0
CAJ CAH HAH CAG 246.6 244.4
HAH CAH CAJ HAJ 200.1 213.8
HAH CAH CAJ HAJA 318.4 336.2
CAJ CAH HAH HAHA 123.3 122.2
HAH CAH CAG HAG 160.5 122.2
HAH CAH CAG HAGA 43.2 360.0
CAG CAH HAH HAHA 236.7 237.8
HAHA CAH CAJ NAT 197.3 217.2
CAJ CAH HAHA CAG 115.7 115.6
HAHA CAH CAJ HAJ 317.3 336.0
HAHA CAH CAJ HAJA 75.5 98.5
CAJ CAH HAHA HAH 237.8 237.8
HAHA CAH CAG HAG 43.4 0.0
HAHA CAH CAG HAGA 286.1 237.8
CAG CAH HAHA HAH 122.2 122.2