PDB Chemical Component U3S

Ideal Model

Chemical Description

Name 1-(5-deoxy-5-piperidin-1-yl-alpha-L-arabinofuranosyl)pyrimidine-2,4(1H,3H)-dione
Formula C14 H21 N3 O5
Formal charge 0
Molecular weight 311.334 g/mol
Component type NON-POLYMER

Chemical features

Atom count 43
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Bond count 45
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 1-(5-deoxy-5-piperidin-1-yl-alpha-L-arabinofuranosyl)pyrimidine-2,4(1H,3H)-dione
Systematic name (OpenEye OEToolkits) 1-[(2R,3R,4R,5S)-3,4-dihydroxy-5-(piperidin-1-ylmethyl)oxolan-2-yl]pyrimidine-2,4-dione

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@@H]1[C@@H](O)[C@@H](O[C@H]1CN2CCCCC2)N3C=CC(=O)NC3=O
SMILES (CACTVS) O[CH]1[CH](O)[CH](O[CH]1CN2CCCCC2)N3C=CC(=O)NC3=O
Stereo SMILES (OpenEye) C1CCN(CC1)C[C@H]2[C@@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O
InChI descriptor InChI=1S/C14H21N3O5/c18-10-4-7-17(14(21)15-10)13-12(20)11(19)9(22-13)8-16-5-2-1-3-6-16/h4,7,9,11-13,19-20H,1-3,5-6,8H2,(H,15,18,21)/t9-,11-,12+,13+/m0/s1
InChIKey descriptor PJCAMYRNNJAIMT-FTYKPCCVSA-N

Status Information

Last modified 2011-06-04
Created 2008-06-10
Release status REL
Model PDB code 3D6Q
Processing site RCSB