PDB Chemical Component U3S

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for U3S

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C4 C5 1.392 1.416
C4 N3 1.395 1.348
C4 O4 1.229 1.218
C5 C6 1.395 1.350
C6 N1 1.418 1.369
N1 C1' 1.502 1.465
N1 C2 1.404 1.345
N3 C2 1.403 1.346
CAV CAK 1.536 1.531
CAV CAJ 1.538 1.531
CAK CAM 1.545 1.530
CAM NBA 1.481 1.468
CAJ CAL 1.535 1.530
CAL NBA 1.480 1.468
NBA C5' 1.477 1.469
C5' C4' 1.560 1.531
C4' O4' 1.463 1.437
C4' C3' 1.512 1.549
O4' C1' 1.462 1.433
C3' O3' 1.420 1.429
C3' C2' 1.509 1.552
C2' O2' 1.429 1.429
C2' C1' 1.547 1.544
C2 O2 1.228 1.216
C5 H5 1.080 1.080
C6 H6 1.080 1.080
N3 HN3 1.000 0.971
CAV HAV 1.100 1.090
CAV HAVA 1.100 1.090
CAK HAK 1.100 1.090
CAK HAKA 1.100 1.090
CAM HAM 1.100 1.090
CAM HAMA 1.100 1.090
CAJ HAJ 1.100 1.089
CAJ HAJA 1.099 1.091
CAL HAL 1.100 1.090
CAL HALA 1.100 1.090
C5' H5' 1.100 1.090
C5' H5'A 1.100 1.090
C4' H4' 1.100 1.090
C3' H3' 1.101 1.090
O3' HO3' 0.950 0.967
C2' H2' 1.100 1.090
O2' HO2' 0.950 0.967
C1' H1' 1.100 1.090

Bond Angles for U3S

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C5 C4 N3 120.2 119.4
C5 C4 O4 120.8 120.3
C4 C5 C6 119.5 119.1
C4 C5 H5 120.3 120.5
N3 C4 O4 119.0 120.3
C4 N3 C2 120.9 120.3
C4 N3 HN3 119.6 119.9
C5 C6 N1 121.0 119.7
C6 C5 H5 120.3 120.4
C5 C6 H6 119.5 120.2
C6 N1 C1' 121.2 119.7
C6 N1 C2 118.9 120.6
N1 C6 H6 119.5 120.2
C1' N1 C2 119.8 119.7
N1 C1' O4' 109.9 109.8
N1 C1' C2' 117.2 109.8
N1 C1' H1' 102.4 109.9
N1 C2 N3 119.5 120.9
N1 C2 O2 121.4 119.5
N3 C2 O2 119.1 119.6
C2 N3 HN3 119.5 119.8
CAK CAV CAJ 111.6 109.2
CAV CAK CAM 112.7 109.3
CAK CAV HAV 108.8 109.5
CAK CAV HAVA 108.2 109.6
CAV CAK HAK 108.4 109.5
CAV CAK HAKA 107.7 109.5
CAV CAJ CAL 111.4 109.3
CAJ CAV HAV 108.7 109.5
CAJ CAV HAVA 108.3 109.5
CAV CAJ HAJ 108.8 109.5
CAV CAJ HAJA 108.4 109.5
CAK CAM NBA 112.5 109.5
CAM CAK HAK 108.4 109.5
CAM CAK HAKA 107.7 109.5
CAK CAM HAM 108.5 109.4
CAK CAM HAMA 107.8 109.5
CAM NBA CAL 110.3 111.2
CAM NBA C5' 113.8 111.0
NBA CAM HAM 108.5 109.5
NBA CAM HAMA 107.8 109.5
CAJ CAL NBA 111.3 109.6
CAL CAJ HAJ 108.8 109.6
CAL CAJ HAJA 108.4 109.5
CAJ CAL HAL 108.9 109.4
CAJ CAL HALA 108.4 109.4
CAL NBA C5' 103.4 111.0
NBA CAL HAL 108.8 109.5
NBA CAL HALA 108.4 109.5
NBA C5' C4' 117.4 109.5
NBA C5' H5' 106.9 109.5
NBA C5' H5'A 105.1 109.4
C5' C4' O4' 120.9 110.3
C5' C4' C3' 111.7 110.3
C4' C5' H5' 106.9 109.5
C4' C5' H5'A 105.1 109.5
C5' C4' H4' 97.0 110.3
O4' C4' C3' 99.4 105.1
C4' O4' C1' 102.8 110.0
O4' C4' H4' 109.8 110.3
C4' C3' O3' 114.0 111.1
C4' C3' C2' 101.2 101.0
C3' C4' H4' 119.4 110.4
C4' C3' H3' 111.7 111.1
O4' C1' C2' 104.9 107.6
O4' C1' H1' 115.2 109.8
O3' C3' C2' 108.4 111.1
O3' C3' H3' 104.9 111.0
C3' O3' HO3' 109.5 114.0
C3' C2' O2' 103.6 110.9
C3' C2' C1' 103.2 102.3
C2' C3' H3' 117.0 111.2
C3' C2' H2' 117.6 110.9
O2' C2' C1' 111.3 110.9
O2' C2' H2' 110.3 110.7
C2' O2' HO2' 109.5 114.0
C1' C2' H2' 110.6 111.0
C2' C1' H1' 107.6 109.9
HAV CAV HAVA 111.2 109.5
HAK CAK HAKA 112.0 109.5
HAM CAM HAMA 111.9 109.5
HAJ CAJ HAJA 111.0 109.6
HAL CAL HALA 110.9 109.5
H5' C5' H5'A 115.9 109.6

Torsion Angles for U3S

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N3 C4 C5 O4 180.1 180.2
C5 C4 N3 C2 359.4 0.1
C5 C4 N3 HN3 179.4 180.0
C4 C5 C6 N1 1.0 0.1
C6 C5 C4 H5 180.0 179.9
C4 C5 C6 H6 181.0 180.0
C5 C4 N3 O4 179.9 179.8
N3 C4 C5 C6 359.8 359.9
N3 C4 C5 H5 179.7 179.9
N1 C2 N3 C4 0.6 359.9
C4 N3 C2 O2 180.7 179.9
C2 N3 C4 HN3 180.0 180.1
C5 C4 O4 N3 180.1 180.2
O4 C4 C5 C6 179.7 179.7
O4 C4 C5 H5 359.6 359.8
O4 C4 N3 C2 179.5 180.3
O4 C4 N3 HN3 359.5 0.2
C6 C5 C4 N3 359.8 359.9
C6 C5 C4 O4 179.7 179.7
C4 C5 C6 H5 180.0 180.1
C5 C6 N1 C1' 180.9 179.9
C5 C6 N1 C2 359.0 360.0
N1 C6 C5 H6 180.0 180.1
N1 C6 C5 H5 181.0 180.0
C5 C6 N1 H6 180.0 179.9
C1' N1 C6 C2 181.8 180.0
C6 N1 C1' O4' 12.8 233.5
C6 N1 C1' C2' 253.2 115.4
C6 N1 C1' H1' 135.7 354.4
C6 N1 C2 N3 0.1 0.0
C6 N1 C2 O2 180.0 180.0
C6 N1 C1' C2 178.2 180.0
C1' N1 C6 H6 0.9 0.0
C1' N1 C2 N3 178.3 180.1
C1' N1 C2 O2 358.2 0.1
C4' O4' C1' N1 265.8 242.2
O4' C1' N1 C2' 119.6 118.1
O4' C1' N1 H1' 237.1 239.1
C3' C2' C1' N1 121.1 140.8
O2' C2' C1' N1 231.6 259.1
N1 C1' C2' H2' 354.6 22.5
C2' C1' N1 H1' 117.5 121.0
C4 N3 C2 N1 0.6 359.9
C6 N1 C2 C1' 181.8 180.0
C2 N1 C6 H6 179.0 180.1
C2 N1 C1' O4' 194.6 53.5
C2 N1 C1' C2' 75.0 295.4
C2 N1 C1' H1' 317.6 174.4
N3 C2 N1 O2 180.1 180.0
N1 C2 N3 HN3 180.6 180.1
C2 N3 C4 O4 179.5 180.3
C4 N3 C2 HN3 180.0 179.9
N1 C2 N3 O2 179.9 180.0
CAK CAV CAJ CAL 334.1 57.6
CAJ CAV CAK HAV 240.0 240.1
CAJ CAV CAK HAVA 119.1 120.0
CAK CAV CAJ HAJ 94.1 177.6
CAK CAV CAJ HAJA 215.0 297.7
CAV CAK CAM NBA 336.7 59.2
CAM CAK CAV HAK 240.0 240.0
CAM CAK CAV HAKA 118.6 119.9
CAV CAK CAM HAM 96.7 179.2
CAV CAK CAM HAMA 218.0 299.1
HAV CAV CAK HAVA 239.1 239.9
HAK CAK CAV HAKA 238.6 239.9
CAJ CAV CAK CAM 56.3 302.4
CAK CAV CAJ HAV 120.0 119.9
CAK CAV CAJ HAVA 240.9 240.0
CAJ CAV CAK HAK 176.3 62.3
CAJ CAV CAK HAKA 297.7 182.4
CAV CAJ CAL NBA 325.6 300.9
CAL CAJ CAV HAJ 240.0 240.0
CAL CAJ CAV HAJA 119.2 119.9
CAV CAJ CAL HAL 85.6 60.9
CAV CAJ CAL HALA 206.4 180.8
HAV CAV CAJ HAVA 120.9 120.1
HAJ CAJ CAV HAJA 239.2 239.9
CAM CAK CAV CAJ 56.3 302.4
CAM CAK CAV HAV 176.2 62.3
CAM CAK CAV HAVA 297.1 182.4
CAV CAK CAM HAK 120.0 119.9
CAV CAK CAM HAKA 241.4 240.1
CAK CAM NBA CAL 322.6 298.3
CAK CAM NBA C5' 206.8 174.2
NBA CAM CAK HAM 240.0 240.0
NBA CAM CAK HAMA 118.7 120.0
HAK CAK CAM HAKA 121.4 120.1
HAM CAM CAK HAMA 238.7 240.0
NBA CAM CAK HAK 216.7 299.2
NBA CAM CAK HAKA 95.3 179.1
CAK CAM NBA HAM 120.0 120.0
CAK CAM NBA HAMA 241.3 240.0
CAJ CAL NBA CAM 69.5 61.7
CAL NBA CAM C5' 115.8 124.1
CAM NBA CAL HAL 309.5 301.7
CAM NBA CAL HALA 188.7 181.7
CAM NBA C5' C4' 302.7 284.3
CAM NBA C5' H5' 62.7 44.2
CAM NBA C5' H5'A 186.4 164.3
HAM CAM NBA HAMA 121.3 120.0
CAL CAJ CAV HAV 214.1 297.7
CAL CAJ CAV HAVA 93.2 177.6
CAV CAJ CAL HAJ 120.0 120.0
CAV CAJ CAL HAJA 240.8 240.1
CAM NBA CAL CAJ 69.5 61.7
CAJ CAL NBA C5' 191.6 185.8
NBA CAL CAJ HAL 240.0 240.0
NBA CAL CAJ HALA 119.2 120.1
HAJ CAJ CAL HAJA 120.8 120.2
HAL CAL CAJ HALA 239.2 240.1
CAM NBA CAL C5' 237.9 235.9
CAL NBA CAM HAM 202.6 178.3
CAL NBA CAM HAMA 81.3 58.3
NBA CAL CAJ HAJ 205.6 180.9
NBA CAL CAJ HAJA 84.8 60.7
CAJ CAL NBA HAL 120.0 120.0
CAJ CAL NBA HALA 240.8 240.0
CAL NBA C5' C4' 182.9 160.1
CAL NBA C5' H5' 302.9 280.0
CAL NBA C5' H5'A 66.6 40.1
HAL CAL NBA HALA 120.8 120.0
CAM NBA C5' CAL 119.8 124.2
C5' NBA CAM HAM 86.8 54.2
C5' NBA CAM HAMA 325.5 294.2
C5' NBA CAL HAL 71.6 65.9
C5' NBA CAL HALA 310.8 305.8
NBA C5' C4' O4' 356.5 297.9
NBA C5' C4' C3' 240.2 182.2
C4' C5' NBA H5' 240.0 240.0
C4' C5' NBA H5'A 116.3 120.0
NBA C5' C4' H4' 114.6 59.9
H5' C5' NBA H5'A 236.3 239.9
NBA C5' C4' H5' 120.0 120.0
NBA C5' C4' H5'A 243.7 240.1
O4' C4' C5' C3' 116.3 115.7
C5' C4' O4' C1' 186.2 216.7
O4' C4' C5' H4' 241.8 238.0
C5' C4' C3' O3' 294.8 273.3
C5' C4' C3' C2' 178.7 155.3
C3' C4' C5' H4' 125.6 122.3
C5' C4' C3' H3' 53.5 37.4
H5' C5' C4' H5'A 123.7 120.1
N1 C1' O4' C4' 265.8 242.2
C5' C4' O4' C3' 237.6 241.1
O4' C4' C5' H5' 236.4 177.9
O4' C4' C5' H5'A 112.8 57.9
C5' C4' O4' H4' 111.6 122.1
O4' C4' C3' O3' 166.0 154.4
O4' C4' C3' C2' 49.9 36.4
C3' C4' O4' H4' 233.9 241.0
O4' C4' C3' H3' 284.7 278.5
C4' O4' C1' C2' 32.6 1.7
C4' O4' C1' H1' 150.8 121.3
C5' C4' C3' O4' 128.8 118.9
C3' C4' C5' H5' 120.2 62.2
C3' C4' C5' H5'A 356.5 302.2
C5' C4' C3' H4' 248.0 237.8
C3' C4' O4' C1' 308.6 335.6
O4' C4' C3' H4' 119.2 118.9
O3' C3' C4' C2' 116.1 117.9
O3' C3' C4' H3' 241.3 235.9
C4' C3' O3' HO3' 346.7 180.0
C4' C3' C2' O2' 214.3 207.6
C4' C3' C2' C1' 330.5 325.9
C2' C3' C4' H3' 125.2 118.0
C4' C3' C2' H2' 92.5 84.2
O4' C1' N1 C2 194.6 53.5
N1 C1' O4' C2' 233.2 240.5
N1 C1' O4' H1' 115.0 120.9
C1' O4' C4' C3' 308.6 335.6
C1' O4' C4' H4' 74.7 94.6
C3' C2' C1' O4' 358.9 21.3
O2' C2' C1' O4' 109.4 139.6
O4' C1' C2' H2' 232.3 263.0
C2' C1' O4' H1' 241.8 240.4
C4' C3' O3' C2' 248.2 248.4
O3' C3' C4' H4' 46.8 35.4
C4' C3' O3' H3' 122.5 124.2
O3' C3' C2' O2' 94.2 89.7
O3' C3' C2' C1' 210.3 208.0
C2' C3' O3' H3' 234.3 235.7
O3' C3' C2' H2' 332.3 326.3
N1 C1' C2' C3' 121.1 140.8
C4' C3' C2' O3' 120.1 117.9
C2' C3' C4' H4' 290.7 277.5
C4' C3' C2' H3' 238.4 242.1
O4' C1' C2' C3' 358.9 21.3
O3' C3' C2' H3' 118.3 124.2
C2' C3' O3' HO3' 98.4 291.6
O2' C2' C3' C1' 243.8 241.8
O2' C2' C3' H2' 121.9 123.4
C3' C2' O2' HO2' 309.3 298.6
C1' C2' C3' H2' 238.0 241.6
C3' C2' C1' H1' 235.7 261.8
N1 C1' C2' O2' 231.6 259.1
O4' C1' C2' O2' 109.4 139.6
C3' C2' O2' C1' 110.3 112.9
O2' C2' C3' H3' 335.9 325.6
C3' C2' O2' H2' 233.4 236.5
C1' C2' O2' H2' 123.1 123.6
O2' C2' C1' H1' 346.2 20.1
C2' C1' N1 C2 75.0 295.4
N1 C1' C2' O4' 122.2 119.5
N1 C1' C2' H1' 245.4 239.0
O4' C1' C2' H1' 123.2 119.5
C3' C2' C1' O2' 249.5 241.7
C1' C2' C3' H3' 92.1 83.8
C3' C2' C1' H2' 126.6 118.3
O2' C2' C1' H2' 237.1 236.6
C1' C2' O2' HO2' 199.0 185.7
N1 C2 O2 N3 180.1 180.0
O2 C2 N3 HN3 0.7 0.1
H5 C5 C4 N3 179.7 179.9
H5 C5 C4 O4 359.6 359.8
C4 C5 H5 C6 180.0 179.9
H5 C5 C6 N1 181.0 180.0
H5 C5 C6 H6 1.0 359.9
C5 C6 H6 N1 180.0 180.1
H6 C6 C5 H5 1.0 359.9
H6 C6 N1 C1' 0.9 0.0
H6 C6 N1 C2 179.0 180.1
HN3 N3 C4 O4 359.5 0.2
C4 N3 HN3 C2 180.0 180.1
HN3 N3 C2 O2 0.7 0.1
CAK CAV HAV CAJ 238.2 240.3
HAV CAV CAK CAM 176.2 62.3
CAK CAV HAV HAVA 119.1 120.1
HAV CAV CAK HAK 296.3 182.3
HAV CAV CAK HAKA 57.6 302.3
HAV CAV CAJ CAL 214.1 297.7
CAJ CAV HAV HAVA 240.9 239.8
HAV CAV CAJ HAJ 334.1 57.7
HAV CAV CAJ HAJA 95.0 177.8
CAK CAV HAVA CAJ 121.2 119.7
HAVA CAV CAK CAM 297.1 182.4
CAK CAV HAVA HAV 240.6 239.9
HAVA CAV CAK HAK 57.2 302.4
HAVA CAV CAK HAKA 178.6 62.5
HAVA CAV CAJ CAL 93.2 177.6
CAJ CAV HAVA HAV 119.4 120.2
HAVA CAV CAJ HAJ 213.2 297.6
HAVA CAV CAJ HAJA 334.0 57.7
HAK CAK CAV CAJ 176.3 62.3
CAV CAK HAK CAM 237.4 240.2
HAK CAK CAV HAV 296.3 182.3
HAK CAK CAV HAVA 57.2 302.4
CAV CAK HAK HAKA 118.7 120.1
HAK CAK CAM NBA 216.7 299.2
CAM CAK HAK HAKA 241.3 239.9
HAK CAK CAM HAM 336.7 59.2
HAK CAK CAM HAMA 98.0 179.2
HAKA CAK CAV CAJ 297.7 182.4
CAV CAK HAKA CAM 121.8 119.8
HAKA CAK CAV HAV 57.6 302.3
HAKA CAK CAV HAVA 178.6 62.5
CAV CAK HAKA HAK 240.9 239.9
HAKA CAK CAM NBA 95.3 179.1
CAM CAK HAKA HAK 119.1 120.1
HAKA CAK CAM HAM 215.3 299.1
HAKA CAK CAM HAMA 336.6 59.1
CAK CAM HAM NBA 237.5 239.9
HAM CAM CAK HAK 336.7 59.2
HAM CAM CAK HAKA 215.3 299.1
CAK CAM HAM HAMA 118.8 120.0
HAM CAM NBA CAL 202.6 178.3
HAM CAM NBA C5' 86.8 54.2
NBA CAM HAM HAMA 241.2 240.0
CAK CAM HAMA NBA 121.7 120.1
HAMA CAM CAK HAK 98.0 179.2
HAMA CAM CAK HAKA 336.6 59.1
CAK CAM HAMA HAM 240.8 240.1
HAMA CAM NBA CAL 81.3 58.3
HAMA CAM NBA C5' 325.5 294.2
NBA CAM HAMA HAM 119.1 120.0
CAV CAJ HAJ CAL 238.4 240.2
HAJ CAJ CAV HAV 334.1 57.7
HAJ CAJ CAV HAVA 213.2 297.6
CAV CAJ HAJ HAJA 119.2 120.1
HAJ CAJ CAL NBA 205.6 180.9
CAL CAJ HAJ HAJA 240.8 239.9
HAJ CAJ CAL HAL 325.6 300.9
HAJ CAJ CAL HALA 86.4 60.8
CAV CAJ HAJA CAL 121.1 119.7
HAJA CAJ CAV HAV 95.0 177.8
HAJA CAJ CAV HAVA 334.0 57.7
CAV CAJ HAJA HAJ 240.5 239.9
HAJA CAJ CAL NBA 84.8 60.7
CAL CAJ HAJA HAJ 119.5 120.2
HAJA CAJ CAL HAL 204.8 180.8
HAJA CAJ CAL HALA 325.6 300.7
CAJ CAL HAL NBA 238.5 239.9
HAL CAL CAJ HAJ 325.6 300.9
HAL CAL CAJ HAJA 204.8 180.8
CAJ CAL HAL HALA 119.3 119.9
HAL CAL NBA C5' 71.6 65.9
NBA CAL HAL HALA 240.8 240.0
CAJ CAL HALA NBA 121.0 120.1
HALA CAL CAJ HAJ 86.4 60.8
HALA CAL CAJ HAJA 325.6 300.7
CAJ CAL HALA HAL 240.5 240.1
HALA CAL NBA C5' 310.8 305.8
NBA CAL HALA HAL 119.5 120.0
NBA C5' H5' C4' 233.5 240.0
NBA C5' H5' H5'A 116.8 120.0
H5' C5' C4' O4' 236.4 177.9
H5' C5' C4' C3' 120.2 62.2
C4' C5' H5' H5'A 243.3 240.0
H5' C5' C4' H4' 354.6 300.0
NBA C5' H5'A C4' 124.5 120.0
NBA C5' H5'A H5' 242.2 240.0
H5'A C5' C4' O4' 112.8 57.9
H5'A C5' C4' C3' 356.5 302.2
C4' C5' H5'A H5' 117.7 120.0
H5'A C5' C4' H4' 231.0 179.9
C5' C4' H4' O4' 233.5 237.9
C5' C4' H4' C3' 119.8 122.2
H4' C4' C5' H5' 354.6 300.0
H4' C4' C5' H5'A 231.0 179.9
O4' C4' H4' C3' 246.3 244.2
H4' C4' O4' C1' 74.7 94.6
H4' C4' C3' O3' 46.8 35.4
H4' C4' C3' C2' 290.7 277.5
H4' C4' C3' H3' 165.5 159.6
C4' C3' H3' O3' 236.0 235.8
C4' C3' H3' C2' 115.9 111.6
H3' C3' C4' H4' 165.5 159.6
O3' C3' H3' C2' 239.9 235.8
H3' C3' O3' HO3' 224.2 55.8
H3' C3' C2' O2' 335.9 325.6
H3' C3' C2' C1' 92.1 83.8
H3' C3' C2' H2' 214.0 202.1
HO3' O3' C3' C2' 98.4 291.6
HO3' O3' C3' H3' 224.2 55.8
C3' C2' H2' O2' 118.4 123.5
C3' C2' H2' C1' 241.9 247.0
H2' C2' C3' H3' 214.0 202.1
O2' C2' H2' C1' 123.5 123.5
H2' C2' O2' HO2' 76.0 62.2
H2' C2' C1' H1' 109.2 143.5
HO2' O2' C2' C1' 199.0 185.7
HO2' O2' C2' H2' 76.0 62.2
H1' C1' N1 C2 317.6 174.4
N1 C1' H1' O4' 240.7 239.1
N1 C1' H1' C2' 124.1 121.0
O4' C1' H1' C2' 243.4 241.9
H1' C1' C2' H2' 109.2 143.5