PDB Chemical Component U37

Ideal Model

Chemical Description

Name URIDINE 5'-MONOTHIOPHOSPHATE
Formula C9 H13 N2 O8 P S
Formal charge 0
Molecular weight 340.247 g/mol
Component type RNA LINKING
Nonstandard Parent Id U

Chemical features

Atom count 34
Chiral atom count 5
Chiral atoms P C4' C3' C2' C1'
Observed leaving atoms O3P
Bond count 35
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5'-O-thiophosphonouridine
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-sulfanyl-phosphinic acid

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P@@](O)(S)=O)N2C=CC(=O)NC2=O
SMILES (CACTVS) O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(S)=O)N2C=CC(=O)NC2=O
Stereo SMILES (OpenEye) C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)S)O)O
InChI descriptor InChI=1S/C9H13N2O8PS/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(19-8)3-18-20(16,17)21/h1-2,4,6-8,13-14H,3H2,(H,10,12,15)(H2,16,17,21)/t4-,6-,7-,8-/m1/s1
InChIKey descriptor NSEBKRRODBXALJ-XVFCMESISA-N

Status Information

Last modified 2011-06-04
Created 1998-01-07
Release status REL
Replaces T31
Processing site RCSB