PDB Chemical Component U37
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for U37
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O3P |
P |
1.474 |
1.479 |
| P |
S |
1.841 |
2.119 |
| P |
O1P |
1.605 |
1.611 |
| P |
O5' |
1.588 |
1.610 |
| S |
HS |
0.950 |
1.344 |
| O1P |
H1P |
0.950 |
0.967 |
| O5' |
C5' |
1.439 |
1.428 |
| C5' |
C4' |
1.504 |
1.529 |
| C5' |
H5'1 |
1.116 |
1.090 |
| C5' |
H5'2 |
1.115 |
1.090 |
| C4' |
O4' |
1.453 |
1.447 |
| C4' |
C3' |
1.515 |
1.544 |
| C4' |
H4' |
1.115 |
1.089 |
| O4' |
C1' |
1.422 |
1.444 |
| C3' |
O3' |
1.409 |
1.428 |
| C3' |
C2' |
1.520 |
1.544 |
| C3' |
H3' |
1.115 |
1.091 |
| O3' |
HA |
0.950 |
0.967 |
| C2' |
O2' |
1.419 |
1.429 |
| C2' |
C1' |
1.523 |
1.544 |
| C2' |
H2' |
1.115 |
1.089 |
| O2' |
HB |
0.950 |
0.965 |
| C1' |
N1 |
1.471 |
1.466 |
| C1' |
H1' |
1.115 |
1.090 |
| N1 |
C2 |
1.393 |
1.344 |
| N1 |
C6 |
1.376 |
1.368 |
| C2 |
O2 |
1.227 |
1.216 |
| C2 |
N3 |
1.378 |
1.346 |
| N3 |
C4 |
1.386 |
1.348 |
| N3 |
H3 |
1.020 |
0.971 |
| C4 |
O4 |
1.231 |
1.218 |
| C4 |
C5 |
1.429 |
1.415 |
| C5 |
C6 |
1.339 |
1.350 |
| C5 |
H5 |
1.103 |
1.080 |
| C6 |
H6 |
1.103 |
1.079 |
Bond Angles for U37
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O3P |
P |
S |
117.8 |
109.5 |
| O3P |
P |
O1P |
108.3 |
109.4 |
| O3P |
P |
O5' |
108.7 |
109.5 |
| S |
P |
O1P |
107.8 |
109.4 |
| S |
P |
O5' |
110.4 |
109.5 |
| P |
S |
HS |
117.8 |
100.0 |
| O1P |
P |
O5' |
102.8 |
109.5 |
| P |
O1P |
H1P |
108.3 |
106.8 |
| P |
O5' |
C5' |
120.0 |
106.8 |
| O5' |
C5' |
C4' |
110.5 |
109.5 |
| O5' |
C5' |
H5'1 |
111.8 |
109.5 |
| O5' |
C5' |
H5'2 |
111.8 |
109.5 |
| C4' |
C5' |
H5'1 |
111.8 |
109.5 |
| C4' |
C5' |
H5'2 |
111.8 |
109.4 |
| C5' |
C4' |
O4' |
109.3 |
110.3 |
| C5' |
C4' |
C3' |
115.9 |
110.7 |
| C5' |
C4' |
H4' |
109.3 |
110.3 |
| H5'1 |
C5' |
H5'2 |
98.6 |
109.4 |
| O4' |
C4' |
C3' |
103.4 |
104.7 |
| O4' |
C4' |
H4' |
109.3 |
110.4 |
| C4' |
O4' |
C1' |
109.8 |
105.3 |
| C3' |
C4' |
H4' |
109.3 |
110.3 |
| C4' |
C3' |
O3' |
114.9 |
110.5 |
| C4' |
C3' |
C2' |
102.7 |
104.2 |
| C4' |
C3' |
H3' |
109.0 |
110.5 |
| O4' |
C1' |
C2' |
107.3 |
104.8 |
| O4' |
C1' |
N1 |
108.6 |
110.4 |
| O4' |
C1' |
H1' |
110.1 |
110.4 |
| O3' |
C3' |
C2' |
112.2 |
110.5 |
| O3' |
C3' |
H3' |
109.0 |
110.4 |
| C3' |
O3' |
HA |
114.8 |
106.9 |
| C2' |
C3' |
H3' |
109.0 |
110.5 |
| C3' |
C2' |
O2' |
112.7 |
110.5 |
| C3' |
C2' |
C1' |
101.0 |
104.1 |
| C3' |
C2' |
H2' |
110.9 |
110.5 |
| O2' |
C2' |
C1' |
110.1 |
110.7 |
| O2' |
C2' |
H2' |
110.9 |
110.4 |
| C2' |
O2' |
HB |
112.7 |
106.9 |
| C1' |
C2' |
H2' |
110.9 |
110.5 |
| C2' |
C1' |
N1 |
110.5 |
110.4 |
| C2' |
C1' |
H1' |
110.1 |
110.4 |
| N1 |
C1' |
H1' |
110.1 |
110.3 |
| C1' |
N1 |
C2 |
118.4 |
119.7 |
| C1' |
N1 |
C6 |
120.8 |
119.6 |
| C2 |
N1 |
C6 |
120.8 |
120.7 |
| N1 |
C2 |
O2 |
123.1 |
119.5 |
| N1 |
C2 |
N3 |
114.8 |
120.9 |
| N1 |
C6 |
C5 |
122.9 |
119.7 |
| N1 |
C6 |
H6 |
118.6 |
120.2 |
| O2 |
C2 |
N3 |
122.1 |
119.6 |
| C2 |
N3 |
C4 |
127.0 |
120.3 |
| C2 |
N3 |
H3 |
116.5 |
119.9 |
| C4 |
N3 |
H3 |
116.5 |
119.9 |
| N3 |
C4 |
O4 |
119.6 |
120.3 |
| N3 |
C4 |
C5 |
114.6 |
119.4 |
| O4 |
C4 |
C5 |
125.7 |
120.3 |
| C4 |
C5 |
C6 |
119.9 |
119.1 |
| C4 |
C5 |
H5 |
120.0 |
120.4 |
| C6 |
C5 |
H5 |
120.1 |
120.5 |
| C5 |
C6 |
H6 |
118.6 |
120.1 |
Torsion Angles for U37
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| S |
P |
O3P |
O1P |
237.4 |
240.1 |
| S |
P |
O3P |
O5' |
126.4 |
120.1 |
| O3P |
P |
S |
HS |
180.0 |
180.0 |
| O1P |
P |
O3P |
O5' |
249.0 |
240.0 |
| O3P |
P |
O1P |
H1P |
180.0 |
300.0 |
| O3P |
P |
O5' |
C5' |
264.6 |
60.0 |
| O3P |
P |
S |
O1P |
122.9 |
119.9 |
| O3P |
P |
S |
O5' |
234.5 |
239.9 |
| O1P |
P |
S |
O5' |
111.6 |
120.0 |
| S |
P |
O1P |
H1P |
308.5 |
60.0 |
| S |
P |
O5' |
C5' |
134.0 |
300.0 |
| O3P |
P |
O1P |
S |
231.5 |
240.0 |
| O3P |
P |
O1P |
O5' |
114.9 |
120.0 |
| S |
P |
O1P |
O5' |
243.4 |
240.0 |
| O1P |
P |
S |
HS |
57.1 |
60.0 |
| O1P |
P |
O5' |
C5' |
19.3 |
180.0 |
| O3P |
P |
O5' |
S |
130.6 |
120.1 |
| O3P |
P |
O5' |
O1P |
245.3 |
240.0 |
| S |
P |
O5' |
O1P |
114.8 |
119.9 |
| O5' |
P |
S |
HS |
305.5 |
300.0 |
| O5' |
P |
O1P |
H1P |
65.1 |
180.0 |
| P |
O5' |
C5' |
C4' |
135.9 |
180.0 |
| P |
O5' |
C5' |
H5'1 |
10.6 |
60.0 |
| P |
O5' |
C5' |
H5'2 |
261.1 |
300.0 |
| HS |
S |
P |
O1P |
57.1 |
60.0 |
| HS |
S |
P |
O5' |
305.5 |
300.0 |
| H1P |
O1P |
P |
O5' |
65.1 |
180.0 |
| C4' |
C5' |
O5' |
H5'1 |
125.3 |
120.0 |
| C4' |
C5' |
O5' |
H5'2 |
234.8 |
240.0 |
| O5' |
C5' |
C4' |
O4' |
240.0 |
61.4 |
| O5' |
C5' |
C4' |
C3' |
356.3 |
176.9 |
| O5' |
C5' |
C4' |
H4' |
120.3 |
299.2 |
| H5'1 |
C5' |
O5' |
H5'2 |
109.5 |
120.0 |
| O5' |
C5' |
C4' |
H5'1 |
234.7 |
240.0 |
| O5' |
C5' |
C4' |
H5'2 |
125.3 |
120.0 |
| H5'1 |
C5' |
C4' |
H5'2 |
250.5 |
240.0 |
| O4' |
C4' |
C5' |
C3' |
243.6 |
244.6 |
| O4' |
C4' |
C5' |
H4' |
119.6 |
122.2 |
| C5' |
C4' |
O4' |
C1' |
145.3 |
159.5 |
| C3' |
C4' |
C5' |
H4' |
236.0 |
237.6 |
| C5' |
C4' |
C3' |
O3' |
81.3 |
98.5 |
| C5' |
C4' |
C3' |
C2' |
203.3 |
217.3 |
| C5' |
C4' |
C3' |
H3' |
318.7 |
336.0 |
| O5' |
C5' |
H5'1 |
C4' |
124.5 |
120.1 |
| O5' |
C5' |
H5'1 |
H5'2 |
242.3 |
240.0 |
| C4' |
C5' |
H5'1 |
H5'2 |
117.7 |
120.0 |
| H5'1 |
C5' |
C4' |
O4' |
5.2 |
181.4 |
| H5'1 |
C5' |
C4' |
C3' |
121.6 |
296.9 |
| H5'1 |
C5' |
C4' |
H4' |
245.6 |
59.2 |
| O5' |
C5' |
H5'2 |
C4' |
235.5 |
239.9 |
| O5' |
C5' |
H5'2 |
H5'1 |
117.7 |
120.0 |
| C4' |
C5' |
H5'2 |
H5'1 |
242.3 |
240.0 |
| H5'2 |
C5' |
C4' |
O4' |
114.7 |
301.4 |
| H5'2 |
C5' |
C4' |
C3' |
231.1 |
56.8 |
| H5'2 |
C5' |
C4' |
H4' |
355.1 |
179.2 |
| O4' |
C4' |
C5' |
H5'1 |
5.2 |
181.4 |
| O4' |
C4' |
C5' |
H5'2 |
114.7 |
301.4 |
| C5' |
C4' |
O4' |
C3' |
124.1 |
119.2 |
| C5' |
C4' |
O4' |
H4' |
240.4 |
237.8 |
| C3' |
C4' |
O4' |
H4' |
116.3 |
118.6 |
| O4' |
C4' |
C3' |
O3' |
200.9 |
217.4 |
| O4' |
C4' |
C3' |
C2' |
322.9 |
336.2 |
| O4' |
C4' |
C3' |
H3' |
78.4 |
94.9 |
| C4' |
O4' |
C1' |
C2' |
3.3 |
319.6 |
| C4' |
O4' |
C1' |
N1 |
243.8 |
200.7 |
| C4' |
O4' |
C1' |
H1' |
123.1 |
78.5 |
| C3' |
C4' |
C5' |
H5'1 |
121.6 |
296.9 |
| C3' |
C4' |
C5' |
H5'2 |
231.1 |
56.8 |
| C5' |
C4' |
C3' |
O4' |
240.4 |
241.1 |
| C5' |
C4' |
C3' |
H4' |
124.0 |
122.4 |
| O4' |
C4' |
C3' |
H4' |
243.6 |
241.3 |
| C3' |
C4' |
O4' |
C1' |
21.2 |
40.3 |
| O3' |
C3' |
C4' |
C2' |
238.0 |
241.2 |
| O3' |
C3' |
C4' |
H3' |
122.6 |
122.5 |
| C4' |
C3' |
O3' |
HA |
180.0 |
178.2 |
| C2' |
C3' |
C4' |
H3' |
244.6 |
241.3 |
| C4' |
C3' |
C2' |
O2' |
280.6 |
241.1 |
| C4' |
C3' |
C2' |
C1' |
38.1 |
359.9 |
| C4' |
C3' |
C2' |
H2' |
155.6 |
118.6 |
| H4' |
C4' |
C5' |
H5'1 |
245.6 |
59.2 |
| H4' |
C4' |
C5' |
H5'2 |
355.1 |
179.2 |
| C5' |
C4' |
H4' |
O4' |
119.6 |
122.2 |
| C5' |
C4' |
H4' |
C3' |
232.2 |
237.4 |
| O4' |
C4' |
H4' |
C3' |
112.5 |
115.2 |
| H4' |
C4' |
O4' |
C1' |
264.9 |
281.7 |
| H4' |
C4' |
C3' |
O3' |
317.3 |
336.1 |
| H4' |
C4' |
C3' |
C2' |
79.3 |
94.9 |
| H4' |
C4' |
C3' |
H3' |
194.7 |
213.6 |
| C1' |
O4' |
C4' |
C3' |
21.2 |
40.3 |
| C1' |
O4' |
C4' |
H4' |
264.9 |
281.7 |
| C3' |
C2' |
C1' |
O4' |
333.9 |
24.0 |
| O2' |
C2' |
C1' |
O4' |
93.3 |
142.7 |
| O4' |
C1' |
C2' |
H2' |
216.4 |
265.4 |
| C2' |
C1' |
O4' |
N1 |
119.5 |
118.9 |
| C2' |
C1' |
O4' |
H1' |
240.1 |
241.1 |
| N1 |
C1' |
O4' |
H1' |
120.6 |
122.2 |
| O4' |
C1' |
N1 |
C2 |
223.8 |
55.2 |
| O4' |
C1' |
N1 |
C6 |
43.9 |
235.4 |
| O3' |
C3' |
C4' |
H4' |
317.3 |
336.1 |
| C4' |
C3' |
O3' |
C2' |
116.7 |
114.9 |
| C4' |
C3' |
O3' |
H3' |
237.5 |
237.4 |
| C2' |
C3' |
O3' |
H3' |
120.7 |
122.6 |
| O3' |
C3' |
C2' |
O2' |
44.4 |
359.8 |
| O3' |
C3' |
C2' |
C1' |
161.9 |
118.7 |
| O3' |
C3' |
C2' |
H2' |
279.4 |
237.3 |
| C2' |
C3' |
C4' |
H4' |
79.3 |
94.9 |
| C4' |
C3' |
C2' |
O3' |
236.2 |
241.2 |
| C4' |
C3' |
C2' |
H3' |
115.4 |
118.7 |
| O4' |
C1' |
C2' |
C3' |
333.9 |
24.0 |
| O3' |
C3' |
C2' |
H3' |
239.2 |
237.4 |
| C2' |
C3' |
O3' |
HA |
63.3 |
63.3 |
| O2' |
C2' |
C3' |
C1' |
242.5 |
241.2 |
| O2' |
C2' |
C3' |
H2' |
125.0 |
122.5 |
| C3' |
C2' |
O2' |
HB |
180.0 |
298.6 |
| C1' |
C2' |
C3' |
H2' |
242.5 |
241.3 |
| C3' |
C2' |
C1' |
N1 |
92.2 |
142.9 |
| C3' |
C2' |
C1' |
H1' |
214.1 |
265.2 |
| H3' |
C3' |
C4' |
H4' |
194.7 |
213.6 |
| C4' |
C3' |
H3' |
O3' |
126.0 |
122.6 |
| C4' |
C3' |
H3' |
C2' |
248.7 |
245.2 |
| O3' |
C3' |
H3' |
C2' |
122.7 |
122.6 |
| H3' |
C3' |
O3' |
HA |
302.6 |
300.7 |
| H3' |
C3' |
C2' |
O2' |
165.2 |
122.4 |
| H3' |
C3' |
C2' |
C1' |
282.7 |
241.2 |
| H3' |
C3' |
C2' |
H2' |
40.2 |
359.9 |
| HA |
O3' |
C3' |
C2' |
63.3 |
63.3 |
| HA |
O3' |
C3' |
H3' |
302.6 |
300.7 |
| O4' |
C1' |
C2' |
O2' |
93.3 |
142.7 |
| O2' |
C2' |
C3' |
H3' |
165.2 |
122.4 |
| C3' |
C2' |
O2' |
C1' |
112.0 |
114.7 |
| C3' |
C2' |
O2' |
H2' |
235.0 |
237.4 |
| C1' |
C2' |
O2' |
H2' |
123.1 |
122.7 |
| O2' |
C2' |
C1' |
N1 |
211.5 |
261.6 |
| O2' |
C2' |
C1' |
H1' |
333.4 |
23.8 |
| O4' |
C1' |
C2' |
N1 |
241.8 |
241.1 |
| O4' |
C1' |
C2' |
H1' |
119.9 |
118.9 |
| C1' |
C2' |
C3' |
H3' |
282.7 |
241.2 |
| C3' |
C2' |
C1' |
O2' |
240.7 |
241.3 |
| C3' |
C2' |
C1' |
H2' |
117.6 |
118.7 |
| O2' |
C2' |
C1' |
H2' |
236.9 |
237.3 |
| C1' |
C2' |
O2' |
HB |
68.1 |
183.9 |
| N1 |
C1' |
C2' |
H1' |
238.1 |
237.8 |
| C2' |
C1' |
N1 |
C2 |
106.4 |
299.7 |
| C2' |
C1' |
N1 |
C6 |
286.4 |
120.0 |
| H2' |
C2' |
C3' |
H3' |
40.2 |
359.9 |
| C3' |
C2' |
H2' |
O2' |
126.0 |
122.5 |
| C3' |
C2' |
H2' |
C1' |
248.6 |
245.3 |
| O2' |
C2' |
H2' |
C1' |
122.6 |
122.8 |
| H2' |
C2' |
O2' |
HB |
305.0 |
61.1 |
| H2' |
C2' |
C1' |
N1 |
334.6 |
24.3 |
| H2' |
C2' |
C1' |
H1' |
96.5 |
146.5 |
| HB |
O2' |
C2' |
C1' |
68.1 |
183.9 |
| HB |
O2' |
C2' |
H2' |
305.0 |
61.1 |
| O4' |
C1' |
N1 |
C2' |
117.4 |
115.5 |
| O4' |
C1' |
N1 |
H1' |
239.4 |
237.7 |
| N1 |
C1' |
C2' |
H2' |
334.6 |
24.3 |
| C2' |
C1' |
N1 |
H1' |
121.9 |
122.3 |
| C2 |
N1 |
C1' |
C6 |
180.0 |
179.8 |
| C1' |
N1 |
C2 |
O2 |
358.8 |
0.2 |
| C1' |
N1 |
C2 |
N3 |
179.3 |
179.7 |
| C1' |
N1 |
C6 |
C5 |
180.3 |
180.0 |
| C1' |
N1 |
C6 |
H6 |
0.3 |
0.0 |
| O4' |
C1' |
H1' |
C2' |
241.9 |
244.6 |
| O4' |
C1' |
H1' |
N1 |
119.7 |
122.3 |
| H1' |
C1' |
C2' |
H2' |
96.5 |
146.5 |
| C2' |
C1' |
H1' |
N1 |
237.9 |
237.7 |
| H1' |
C1' |
N1 |
C2 |
344.4 |
177.5 |
| H1' |
C1' |
N1 |
C6 |
164.5 |
357.7 |
| C2 |
N1 |
C1' |
H1' |
344.4 |
177.5 |
| C1' |
N1 |
C2 |
C6 |
180.0 |
180.2 |
| C2 |
N1 |
C6 |
C5 |
0.4 |
0.2 |
| C2 |
N1 |
C6 |
H6 |
180.3 |
180.2 |
| O2 |
C2 |
N1 |
N3 |
179.5 |
180.5 |
| N1 |
C2 |
N3 |
C4 |
0.4 |
0.5 |
| N1 |
C2 |
N3 |
H3 |
180.4 |
180.2 |
| C6 |
N1 |
C1' |
H1' |
164.5 |
357.7 |
| C1' |
N1 |
C6 |
C2 |
179.9 |
179.8 |
| C6 |
N1 |
C2 |
O2 |
178.8 |
180.0 |
| C6 |
N1 |
C2 |
N3 |
359.3 |
359.5 |
| C4 |
C5 |
C6 |
N1 |
0.4 |
0.0 |
| N1 |
C6 |
C5 |
H5 |
180.3 |
180.0 |
| C5 |
C6 |
N1 |
H6 |
180.0 |
180.0 |
| O2 |
C2 |
N1 |
C6 |
178.8 |
180.0 |
| N1 |
C2 |
O2 |
N3 |
180.5 |
179.5 |
| O2 |
C2 |
N3 |
C4 |
180.9 |
180.1 |
| O2 |
C2 |
N3 |
H3 |
0.9 |
359.8 |
| N3 |
C2 |
N1 |
C6 |
359.3 |
359.5 |
| N1 |
C2 |
N3 |
O2 |
179.5 |
180.5 |
| C4 |
N3 |
C2 |
H3 |
180.0 |
180.3 |
| C2 |
N3 |
C4 |
O4 |
180.6 |
179.7 |
| C2 |
N3 |
C4 |
C5 |
0.2 |
359.7 |
| C2 |
N3 |
C4 |
H3 |
180.0 |
179.7 |
| O4 |
C4 |
N3 |
C5 |
180.3 |
180.1 |
| N3 |
C4 |
C5 |
C6 |
359.4 |
0.1 |
| N3 |
C4 |
C5 |
H5 |
179.4 |
180.1 |
| C2 |
N3 |
H3 |
C4 |
180.0 |
180.3 |
| H3 |
N3 |
C4 |
O4 |
0.6 |
0.1 |
| H3 |
N3 |
C4 |
C5 |
180.3 |
180.0 |
| O4 |
C4 |
N3 |
H3 |
0.6 |
0.1 |
| N3 |
C4 |
O4 |
C5 |
179.6 |
179.9 |
| O4 |
C4 |
C5 |
C6 |
179.0 |
180.0 |
| O4 |
C4 |
C5 |
H5 |
359.0 |
360.0 |
| N1 |
C6 |
C5 |
C4 |
0.4 |
0.0 |
| C5 |
C4 |
N3 |
H3 |
180.3 |
180.0 |
| N3 |
C4 |
C5 |
O4 |
180.3 |
180.1 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
H6 |
180.4 |
180.0 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
180.0 |
| H5 |
C5 |
C6 |
H6 |
0.4 |
360.0 |
| N1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
| H6 |
C6 |
C5 |
H5 |
0.4 |
360.0 |