PDB Chemical Component U2P

Ideal Model

Chemical Description

Name PHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER
Synonyms URIDINE-2'-PHOSPHATE; 2'-URIDINEMONOPHOSPHATE
Formula C9 H13 N2 O9 P
Formal charge 0
Molecular weight 324.181 g/mol
Component type RNA LINKING
Nonstandard Parent Id U

Chemical features

Atom count 34
Chiral atom count 4
Chiral atoms C4' C1' C2' C3'
Observed leaving atoms O3P
Bond count 35
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-uridylic acid
Systematic name (OpenEye OEToolkits) [(2R,3R,4R,5R)-2-(2,4-dioxopyrimidin-1-yl)-4-hydroxy-5-(hydroxymethyl)oxolan-3-yl] dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) OC[C@H]1O[C@H]([C@H](O[P](O)(O)=O)[C@@H]1O)N2C=CC(=O)NC2=O
SMILES (CACTVS) OC[CH]1O[CH]([CH](O[P](O)(O)=O)[CH]1O)N2C=CC(=O)NC2=O
Stereo SMILES (OpenEye) C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)OP(=O)(O)O
InChI descriptor InChI=1S/C9H13N2O9P/c12-3-4-6(14)7(20-21(16,17)18)8(19-4)11-2-1-5(13)10-9(11)15/h1-2,4,6-8,12,14H,3H2,(H,10,13,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1
InChIKey descriptor HQIDPEYTETUCNF-XVFCMESISA-N

Status Information

Last modified 2011-06-04
Created 2003-02-26
Release status REL
Model PDB code 1O0M
Processing site RCSB