Atom Nomenclature for U10

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for U10

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C1M C1M
C3M C3M
C4M C4M
C7 C7
C8 C8
C9 C9
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
C27 C27
C28 C28
C29 C29
C30 C30
C31 C31
C32 C32
C33 C33
C34 C34
C35 C35
C36 C36
C37 C37
C38 C38
C39 C39
C40 C40
C41 C41
C42 C42
C43 C43
C44 C44
C45 C45
C46 C46
C47 C47
C48 C48
C49 C49
C50 C50
C51 C51
C52 C52
C53 C53
C54 C54
C55 C55
C56 C56
O2 O2
O3 O3
O4 O4
O5 O5
H1M1 1H1M
H1M2 2H1M
H1M3 3H1M
H3M1 1H3M
H3M2 2H3M
H3M3 3H3M
H4M1 1H4M
H4M2 2H4M
H4M3 3H4M
H71 1H7
H72 2H7
H8 H8
H101 1H10
H102 2H10
H103 3H10
H111 1H11
H112 2H11
H121 1H12
H122 2H12
H13 H13
H151 1H15
H152 2H15
H153 3H15
H161 1H16
H162 2H16
H171 1H17
H172 2H17
H18 H18
H201 1H20
H202 2H20
H203 3H20
H211 1H21
H212 2H21
H221 1H22
H222 2H22
H23 H23
H251 1H25
H252 2H25
H253 3H25
H261 1H26
H262 2H26
H271 1H27
H272 2H27
H28 H28
H301 1H30
H302 2H30
H303 3H30
H311 1H31
H312 2H31
H321 1H32
H322 2H32
H33 H33
H351 1H35
H352 2H35
H353 3H35
H361 1H36
H362 2H36
H371 1H37
H372 2H37
H38 H38
H401 1H40
H402 2H40
H403 3H40
H411 1H41
H412 2H41
H421 1H42
H422 2H42
H43 H43
H451 1H45
H452 2H45
H453 3H45
H461 1H46
H462 2H46
H471 1H47
H472 2H47
H48 H48
H501 1H50
H502 2H50
H503 3H50
H511 1H51
H512 2H51
H521 1H52
H522 2H52
H53 H53
H551 1H55
H552 2H55
H553 3H55
H561 1H56
H562 2H56
H563 3H56