PDB Chemical Component U05

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for U05

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	C2	1.349	1.319
N1	C1A	1.344	1.321
C2	C3	1.379	1.383
C2	H2	1.103	1.080
C3	C4	1.378	1.384
C3	H3	1.104	1.080
C4	C4A	1.384	1.400
C4	H4	1.103	1.079
C4A	C5	1.522	1.465
C4A	C1A	1.396	1.405
C5	O13	1.233	1.215
C5	N6	1.338	1.324
N6	C12	1.482	1.464
N6	C6A	1.437	1.382
C12	H121	1.114	1.090
C12	H122	1.115	1.090
C12	H123	1.114	1.090
C6A	C7	1.392	1.398
C6A	C11	1.395	1.397
C7	C8	1.383	1.362
C7	H7	1.102	1.080
C8	C9	1.386	1.407
C8	H8	1.102	1.080
C9	N	1.463	1.339
C9	C10	1.388	1.408
N	O1	1.208	1.218
N	O2	1.205	1.218
C10	C11	1.387	1.380
C10	H10	1.103	1.080
C11	N11	1.407	1.400
N11	C14	1.499	1.466
N11	C1A	1.396	1.383
C14	C15	1.497	1.530
C14	H141	1.116	1.090
C14	H142	1.114	1.090
C15	H151	1.115	1.090
C15	H152	1.115	1.089
C15	H153	1.115	1.090

Bond Angles for U05

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C1A	118.6	121.9
N1	C2	C3	122.3	121.2
N1	C2	H2	117.7	119.4
N1	C1A	C4A	121.9	120.3
N1	C1A	N11	119.4	120.1
C3	C2	H2	120.0	119.4
C2	C3	C4	119.1	119.5
C2	C3	H3	120.4	120.3
C4	C3	H3	120.4	120.2
C3	C4	C4A	119.4	118.3
C3	C4	H4	120.1	120.8
C4A	C4	H4	120.5	120.9
C4	C4A	C5	119.0	120.1
C4	C4A	C1A	118.6	118.8
C5	C4A	C1A	122.1	121.1
C4A	C5	O13	117.8	117.1
C4A	C5	N6	121.7	125.8
C4A	C1A	N11	118.6	119.6
O13	C5	N6	120.5	117.1
C5	N6	C12	119.4	116.4
C5	N6	C6A	127.1	127.1
C12	N6	C6A	113.5	116.5
N6	C12	H121	119.4	109.5
N6	C12	H122	108.6	109.5
N6	C12	H123	108.6	109.5
N6	C6A	C7	118.9	118.7
N6	C6A	C11	121.6	121.5
H121	C12	H122	108.7	109.4
H121	C12	H123	108.6	109.5
H122	C12	H123	101.4	109.4
C7	C6A	C11	119.5	119.8
C6A	C7	C8	120.5	120.7
C6A	C7	H7	120.1	119.6
C6A	C11	C10	119.7	120.1
C6A	C11	N11	119.4	120.9
C8	C7	H7	119.4	119.7
C7	C8	C9	120.0	120.1
C7	C8	H8	119.8	119.9
C9	C8	H8	120.1	120.0
C8	C9	N	120.0	120.2
C8	C9	C10	119.8	119.5
N	C9	C10	120.2	120.3
C9	N	O1	117.7	120.0
C9	N	O2	116.7	120.0
C9	C10	C11	120.5	119.8
C9	C10	H10	119.8	120.0
O1	N	O2	125.5	120.0
C11	C10	H10	119.8	120.1
C10	C11	N11	120.8	119.0
C11	N11	C14	115.4	120.4
C11	N11	C1A	114.4	119.2
C14	N11	C1A	114.4	120.4
N11	C14	C15	114.4	109.5
N11	C14	H141	110.4	109.5
N11	C14	H142	110.4	109.5
C15	C14	H141	110.4	109.5
C15	C14	H142	110.4	109.5
C14	C15	H151	114.4	109.4
C14	C15	H152	110.4	109.5
C14	C15	H153	110.4	109.4
H141	C14	H142	99.9	109.5
H151	C15	H152	110.4	109.5
H151	C15	H153	110.4	109.5
H152	C15	H153	99.9	109.5

Torsion Angles for U05

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C1A	C4A	0.1	2.5
C2	N1	C1A	N11	178.4	183.3
C3	C2	N1	H2	180.0	179.9
N1	C2	C3	C4	0.0	358.8
N1	C2	C3	H3	180.0	178.8
C1A	N1	C2	C3	360.0	359.8
C1A	N1	C2	H2	180.0	179.9
C4	C4A	C1A	N1	359.7	356.6
C5	C4A	C1A	N1	173.7	176.2
C4A	C1A	N1	N11	181.7	179.2
C11	N11	C1A	N1	114.9	119.2
C14	N11	C1A	N1	338.7	299.4
C3	C2	N1	C1A	360.0	359.8
N1	C2	C3	H2	180.0	180.1
C4	C3	C2	H3	180.1	180.0
C2	C3	C4	C4A	359.9	0.2
C2	C3	C4	H4	179.8	180.3
H2	C2	N1	C1A	180.0	179.9
N1	C2	H2	C3	180.0	179.9
H2	C2	C3	C4	180.0	178.7
H2	C2	C3	H3	360.0	358.8
C4	C3	C2	H2	180.0	178.7
C2	C3	C4	H3	179.9	180.0
C4A	C4	C3	H4	180.0	179.9
C3	C4	C4A	C5	186.1	182.4
C3	C4	C4A	C1A	0.3	2.1
H3	C3	C2	H2	360.0	358.8
C2	C3	H3	C4	180.1	180.0
H3	C3	C4	C4A	179.9	180.1
H3	C3	C4	H4	359.9	0.2
N1	C1A	C4A	C4	359.7	356.6
C4A	C4	C3	H3	179.9	180.1
C3	C4	C4A	H4	180.0	180.1
C5	C4A	C4	C1A	185.9	180.4
C4	C4A	C5	O13	35.6	38.6
C4	C4A	C5	N6	215.9	218.8
C4	C4A	C1A	N11	181.4	175.8
H4	C4	C3	H3	359.9	0.2
C3	C4	H4	C4A	180.0	179.9
H4	C4	C4A	C5	6.1	2.3
H4	C4	C4A	C1A	180.3	181.9
N1	C1A	C4A	C5	173.7	176.2
C5	C4A	C4	H4	6.1	2.3
C4	C4A	C5	C1A	173.9	179.6
C5	C4A	C1A	N11	355.4	355.4
O13	C5	C4A	N6	179.6	179.8
C4A	C5	N6	C12	178.4	181.2
C4A	C5	N6	C6A	360.0	1.0
N1	C1A	C4A	N11	178.3	180.8
C1A	C4A	C4	H4	180.3	181.9
C4	C4A	C1A	C5	186.0	180.4
C1A	C4A	C5	O13	221.6	219.0
C1A	C4A	C5	N6	42.0	39.2
C11	N11	C1A	C4A	293.2	300.0
C14	N11	C1A	C4A	157.0	120.2
O13	C5	C4A	C1A	221.6	219.0
C4A	C5	O13	N6	180.4	180.2
O13	C5	N6	C12	358.8	1.3
O13	C5	N6	C6A	180.4	181.2
N6	C5	C4A	C1A	42.0	39.2
C4A	C5	N6	O13	179.6	179.8
C12	N6	C5	C6A	178.4	180.1
C5	N6	C12	H121	180.0	359.9
C5	N6	C12	H122	305.3	119.9
C5	N6	C12	H123	54.7	239.9
C5	N6	C6A	C7	143.6	142.1
C5	N6	C6A	C11	320.8	319.8
C5	N6	C12	C6A	181.4	179.9
C12	N6	C6A	C7	325.1	322.0
C12	N6	C6A	C11	142.3	139.6
H121	C12	N6	H122	234.8	240.0
H121	C12	N6	H123	125.3	120.1
H122	C12	N6	H123	250.5	240.1
C5	N6	C6A	C12	178.5	180.1
C6A	N6	C12	H121	358.6	180.1
C6A	N6	C12	H122	123.9	300.0
C6A	N6	C12	H123	233.4	60.0
C7	C6A	N6	C11	182.9	182.4
N6	C6A	C7	C8	177.5	175.9
N6	C6A	C7	H7	357.5	356.0
N6	C6A	C11	C10	182.4	184.9
N6	C6A	C11	N11	360.0	5.1
H121	C12	N6	C6A	358.6	180.1
N6	C12	H121	H122	125.2	120.0
N6	C12	H121	H123	234.7	239.9
H122	C12	H121	H123	109.5	119.9
H122	C12	N6	C6A	123.9	300.0
N6	C12	H122	H121	228.7	240.0
N6	C12	H122	H123	114.3	120.0
H121	C12	H122	H123	245.6	240.1
H123	C12	N6	C6A	233.4	60.0
N6	C12	H123	H121	131.3	120.1
N6	C12	H123	H122	245.7	240.0
H121	C12	H123	H122	114.4	119.9
N6	C6A	C7	C11	177.2	177.7
C7	C6A	C11	C10	359.5	2.5
C7	C6A	C11	N11	177.1	182.8
C8	C7	C6A	H7	180.0	179.9
C6A	C7	C8	C9	0.1	359.7
C6A	C7	C8	H8	180.1	179.6
N6	C6A	C11	C7	182.9	182.4
C11	C6A	C7	C8	0.3	358.2
C11	C6A	C7	H7	180.3	178.3
C9	C10	C11	C6A	0.2	358.8
C6A	C11	C10	H10	180.3	178.8
C10	C11	C6A	N11	182.4	179.8
C6A	C11	N11	C14	205.9	241.0
C6A	C11	N11	C1A	70.1	61.2
C8	C7	C6A	C11	0.3	358.2
C6A	C7	C8	H7	180.0	180.1
C9	C8	C7	H8	180.0	180.1
C7	C8	C9	N	179.9	181.5
C7	C8	C9	C10	359.6	1.6
H7	C7	C6A	C11	180.3	178.3
C6A	C7	H7	C8	180.0	179.9
H7	C7	C8	C9	180.1	179.7
H7	C7	C8	H8	0.1	359.6
C9	C8	C7	H7	180.1	179.7
C7	C8	C9	H8	180.0	179.9
N	C9	C8	C10	180.3	180.0
C8	C9	N	O1	181.5	360.0
C8	C9	N	O2	2.4	180.1
C8	C9	C10	C11	0.2	359.2
C8	C9	C10	H10	180.1	179.2
H8	C8	C7	H7	0.1	359.6
C7	C8	H8	C9	180.0	180.1
H8	C8	C9	N	359.9	1.6
H8	C8	C9	C10	179.7	181.7
N	C9	C8	H8	359.9	1.6
C8	C9	N	C10	179.7	180.0
N	C9	C10	C11	179.9	179.2
N	C9	C10	H10	359.9	359.2
O1	N	C9	O2	179.1	179.9
C6A	C11	C10	C9	0.2	358.8
C10	C9	C8	H8	179.7	181.7
C8	C9	C10	N	180.3	180.0
C10	C9	N	O1	1.8	179.9
C10	C9	N	O2	182.6	0.0
C11	C10	C9	H10	180.0	180.0
C9	C10	C11	N11	182.7	178.6
O1	N	C9	C10	1.8	179.9
C9	N	O1	O2	181.0	180.1
O2	N	C9	C10	182.6	0.0
C9	N	O2	O1	179.1	179.9
C6A	C11	C10	N11	177.6	180.2
C9	C10	C11	H10	180.0	180.0
C10	C11	N11	C14	23.5	61.2
C10	C11	N11	C1A	247.7	241.5
C9	C10	H10	C11	180.0	180.0
H10	C10	C11	N11	2.7	358.5
N1	C1A	N11	C11	114.9	119.2
C4A	C1A	N11	C11	293.2	300.0
C6A	C11	N11	C10	182.4	179.8
N11	C11	C10	H10	2.7	358.5
C14	N11	C11	C1A	135.8	179.8
C11	N11	C14	C15	115.6	90.0
C11	N11	C14	H141	240.9	330.0
C11	N11	C14	H142	350.3	210.0
N1	C1A	N11	C14	338.7	299.4
C4A	C1A	N11	C14	157.0	120.2
C11	N11	C14	C1A	224.2	180.2
C15	C14	N11	H141	234.8	120.0
C15	C14	N11	H142	125.3	240.0
N11	C14	C15	H151	180.0	180.0
N11	C14	C15	H152	305.3	300.0
N11	C14	C15	H153	54.7	60.1
H141	C14	N11	H142	250.5	120.0
N1	C1A	N11	C4A	181.6	179.2
C11	N11	C1A	C14	136.2	179.8
C1A	N11	C14	C15	251.4	269.7
C1A	N11	C14	H141	16.6	149.7
C1A	N11	C14	H142	126.1	29.8
C15	C14	N11	C1A	251.4	269.7
N11	C14	C15	H141	125.2	240.0
N11	C14	C15	H142	234.7	120.0
H141	C14	C15	H142	109.5	240.0
H151	C15	C14	H152	234.7	240.0
H151	C15	C14	H153	125.2	120.0
H152	C15	C14	H153	250.5	240.0
H141	C14	N11	C1A	16.6	149.7
N11	C14	H141	C15	232.5	120.0
N11	C14	H141	H142	116.3	240.0
C15	C14	H141	H142	243.7	120.0
H141	C14	C15	H151	54.7	300.0
H141	C14	C15	H152	180.0	60.0
H141	C14	C15	H153	289.5	180.0
H142	C14	N11	C1A	126.1	29.8
N11	C14	H142	C15	127.5	240.0
N11	C14	H142	H141	243.8	120.0
C15	C14	H142	H141	116.3	240.0
H142	C14	C15	H151	305.3	60.0
H142	C14	C15	H152	70.6	180.0
H142	C14	C15	H153	180.0	300.0
H151	C15	C14	H141	54.7	300.0
H151	C15	C14	H142	305.3	60.0
C14	C15	H151	H152	125.3	120.0
C14	C15	H151	H153	234.8	240.1
H152	C15	H151	H153	109.5	120.1
H152	C15	C14	H141	180.0	60.0
H152	C15	C14	H142	70.6	180.0
C14	C15	H152	H151	232.5	240.0
C14	C15	H152	H153	116.2	120.0
H151	C15	H152	H153	243.7	239.9
H153	C15	C14	H141	289.5	180.0
H153	C15	C14	H142	180.0	300.0
C14	C15	H153	H151	127.4	119.9
C14	C15	H153	H152	243.8	240.0
H151	C15	H153	H152	116.3	120.1