PDB Chemical Component TYZ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for TYZ
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O1 |
C7 |
1.261 |
1.235 |
O2 |
C7 |
|
1.361 |
O2 |
H1 |
|
0.982 |
C7 |
C3 |
1.460 |
1.455 |
C3 |
C4 |
1.367 |
1.394 |
C3 |
C2 |
1.455 |
1.395 |
C4 |
C5 |
1.396 |
1.395 |
C4 |
H4 |
1.103 |
1.088 |
C5 |
C6 |
1.416 |
1.395 |
C5 |
H5 |
1.103 |
1.087 |
C6 |
C1 |
1.379 |
1.395 |
C6 |
N |
1.373 |
1.395 |
C1 |
C2 |
1.388 |
1.395 |
C1 |
HA |
1.103 |
1.087 |
C2 |
H2 |
1.103 |
1.087 |
C8 |
N |
1.381 |
1.401 |
C8 |
O4 |
1.250 |
1.227 |
C8 |
C9 |
1.519 |
1.508 |
N |
HN |
1.019 |
1.026 |
C9 |
H9C1 |
1.115 |
1.094 |
C9 |
H9C2 |
1.115 |
1.094 |
C9 |
H9C3 |
1.115 |
1.093 |
Bond Angles for TYZ
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C7 |
O2 |
|
122.1 |
O1 |
C7 |
C3 |
121.7 |
125.4 |
C7 |
O2 |
H1 |
|
113.1 |
O2 |
C7 |
C3 |
|
112.5 |
C7 |
C3 |
C4 |
118.4 |
120.0 |
C7 |
C3 |
C2 |
120.7 |
120.0 |
C4 |
C3 |
C2 |
120.7 |
120.0 |
C3 |
C4 |
C5 |
115.3 |
120.0 |
C3 |
C4 |
H4 |
122.3 |
120.7 |
C3 |
C2 |
C1 |
122.6 |
120.0 |
C3 |
C2 |
H2 |
118.7 |
120.7 |
C5 |
C4 |
H4 |
122.3 |
119.3 |
C4 |
C5 |
C6 |
124.7 |
120.0 |
C4 |
C5 |
H5 |
117.7 |
119.4 |
C6 |
C5 |
H5 |
117.6 |
120.7 |
C5 |
C6 |
C1 |
120.0 |
120.0 |
C5 |
C6 |
N |
122.3 |
120.0 |
C1 |
C6 |
N |
117.6 |
120.1 |
C6 |
C1 |
C2 |
116.6 |
120.0 |
C6 |
C1 |
HA |
121.7 |
120.6 |
C6 |
N |
C8 |
123.7 |
128.1 |
C6 |
N |
HN |
117.9 |
116.4 |
C2 |
C1 |
HA |
121.7 |
119.3 |
C1 |
C2 |
H2 |
118.7 |
119.4 |
N |
C8 |
O4 |
123.1 |
127.5 |
N |
C8 |
C9 |
119.7 |
111.8 |
C8 |
N |
HN |
118.5 |
115.5 |
O4 |
C8 |
C9 |
117.2 |
120.8 |
C8 |
C9 |
H9C1 |
119.6 |
109.8 |
C8 |
C9 |
H9C2 |
108.6 |
109.8 |
C8 |
C9 |
H9C3 |
108.5 |
110.0 |
H9C1 |
C9 |
H9C2 |
108.5 |
108.9 |
H9C1 |
C9 |
H9C3 |
108.6 |
109.6 |
H9C2 |
C9 |
H9C3 |
101.5 |
108.8 |
Torsion Angles for TYZ
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C7 |
O2 |
H1 |
|
0.0 |
O2 |
C7 |
O1 |
C3 |
|
180.1 |
O1 |
C7 |
C3 |
C4 |
162.9 |
360.0 |
O1 |
C7 |
C3 |
C2 |
348.5 |
180.1 |
O1 |
C7 |
O2 |
C3 |
|
180.0 |
O2 |
C7 |
C3 |
C4 |
|
179.9 |
O2 |
C7 |
C3 |
C2 |
|
0.0 |
H1 |
O2 |
C7 |
C3 |
|
180.1 |
O1 |
C7 |
C3 |
O2 |
|
180.1 |
C3 |
C7 |
O2 |
H1 |
|
180.1 |
C4 |
C3 |
C7 |
C2 |
174.5 |
179.9 |
C7 |
C3 |
C4 |
C5 |
182.6 |
180.1 |
C7 |
C3 |
C4 |
H4 |
2.6 |
0.1 |
C7 |
C3 |
C2 |
C1 |
178.1 |
179.9 |
C7 |
C3 |
C2 |
H2 |
358.1 |
360.0 |
C7 |
C3 |
C4 |
C2 |
185.5 |
180.1 |
C4 |
C3 |
C2 |
C1 |
3.8 |
360.0 |
C4 |
C3 |
C2 |
H2 |
183.8 |
180.1 |
C5 |
C4 |
C3 |
H4 |
180.0 |
180.0 |
C3 |
C4 |
C5 |
C6 |
2.0 |
360.0 |
C3 |
C4 |
C5 |
H5 |
182.0 |
180.0 |
C7 |
C3 |
C2 |
C4 |
174.3 |
179.9 |
C2 |
C3 |
C4 |
C5 |
357.1 |
0.0 |
C2 |
C3 |
C4 |
H4 |
177.1 |
180.0 |
C6 |
C1 |
C2 |
C3 |
356.8 |
0.0 |
C3 |
C2 |
C1 |
HA |
176.8 |
180.0 |
C1 |
C2 |
C3 |
H2 |
180.0 |
179.9 |
C5 |
C4 |
C3 |
C2 |
357.1 |
0.0 |
C3 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
C4 |
C5 |
C6 |
C1 |
358.4 |
0.0 |
C4 |
C5 |
C6 |
N |
182.4 |
180.0 |
H4 |
C4 |
C3 |
C2 |
177.1 |
180.0 |
C3 |
C4 |
H4 |
C5 |
180.0 |
180.0 |
H4 |
C4 |
C5 |
C6 |
182.0 |
180.0 |
H4 |
C4 |
C5 |
H5 |
2.0 |
0.1 |
C6 |
C5 |
C4 |
H4 |
182.0 |
180.0 |
C4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
C1 |
C6 |
C5 |
N |
176.0 |
180.1 |
C5 |
C6 |
C1 |
C2 |
2.1 |
360.0 |
C5 |
C6 |
C1 |
HA |
182.1 |
180.0 |
C5 |
C6 |
N |
C8 |
6.2 |
180.0 |
C5 |
C6 |
N |
HN |
186.3 |
360.0 |
H5 |
C5 |
C4 |
H4 |
2.0 |
0.1 |
C4 |
C5 |
H5 |
C6 |
180.0 |
180.0 |
H5 |
C5 |
C6 |
C1 |
178.4 |
180.0 |
H5 |
C5 |
C6 |
N |
2.4 |
359.9 |
C3 |
C2 |
C1 |
C6 |
356.8 |
0.0 |
C1 |
C6 |
C5 |
H5 |
178.4 |
180.0 |
C5 |
C6 |
C1 |
N |
183.8 |
179.9 |
C1 |
C6 |
N |
C8 |
190.2 |
359.9 |
C1 |
C6 |
N |
HN |
10.2 |
179.9 |
C2 |
C1 |
C6 |
HA |
180.0 |
180.0 |
C6 |
C1 |
C2 |
H2 |
176.8 |
179.9 |
N |
C6 |
C5 |
H5 |
2.4 |
359.9 |
C5 |
C6 |
N |
C1 |
176.1 |
180.1 |
N |
C6 |
C1 |
C2 |
178.3 |
180.0 |
N |
C6 |
C1 |
HA |
358.3 |
0.0 |
C6 |
N |
C8 |
O4 |
187.7 |
0.2 |
C6 |
N |
C8 |
C9 |
7.2 |
180.0 |
C8 |
N |
C6 |
HN |
179.9 |
180.0 |
C3 |
C2 |
C1 |
H2 |
180.0 |
180.1 |
C2 |
C1 |
C6 |
N |
178.3 |
180.0 |
C6 |
C1 |
C2 |
HA |
180.0 |
180.0 |
HA |
C1 |
C6 |
N |
358.3 |
0.0 |
C6 |
C1 |
HA |
C2 |
180.0 |
180.0 |
HA |
C1 |
C2 |
H2 |
356.8 |
359.9 |
C3 |
C2 |
H2 |
C1 |
180.0 |
179.9 |
H2 |
C2 |
C1 |
HA |
356.8 |
359.9 |
C6 |
N |
C8 |
HN |
180.1 |
180.0 |
O4 |
C8 |
N |
C9 |
180.5 |
180.2 |
N |
C8 |
C9 |
H9C1 |
180.0 |
297.8 |
N |
C8 |
C9 |
H9C2 |
54.7 |
178.1 |
N |
C8 |
C9 |
H9C3 |
305.3 |
58.4 |
N |
C8 |
O4 |
C9 |
179.5 |
179.8 |
O4 |
C8 |
N |
HN |
7.7 |
180.3 |
O4 |
C8 |
C9 |
H9C1 |
359.5 |
117.6 |
O4 |
C8 |
C9 |
H9C2 |
234.3 |
357.9 |
O4 |
C8 |
C9 |
H9C3 |
124.8 |
238.2 |
N |
C8 |
C9 |
O4 |
180.5 |
180.2 |
C9 |
C8 |
N |
HN |
187.2 |
0.1 |
H9C1 |
C9 |
C8 |
H9C2 |
125.2 |
119.7 |
H9C1 |
C9 |
C8 |
H9C3 |
234.7 |
239.4 |
H9C2 |
C9 |
C8 |
H9C3 |
109.5 |
119.7 |
C6 |
N |
HN |
C8 |
180.0 |
180.0 |
HN |
N |
C8 |
O4 |
7.7 |
180.3 |
HN |
N |
C8 |
C9 |
187.2 |
0.1 |
C8 |
C9 |
H9C1 |
H9C2 |
234.8 |
239.8 |
C8 |
C9 |
H9C1 |
H9C3 |
125.3 |
120.9 |
H9C2 |
C9 |
H9C1 |
H9C3 |
250.5 |
241.1 |
C8 |
C9 |
H9C2 |
H9C1 |
131.5 |
120.2 |
C8 |
C9 |
H9C2 |
H9C3 |
245.8 |
239.6 |
H9C1 |
C9 |
H9C2 |
H9C3 |
114.3 |
119.4 |
C8 |
C9 |
H9C3 |
H9C1 |
228.5 |
239.2 |
C8 |
C9 |
H9C3 |
H9C2 |
114.2 |
120.3 |
H9C1 |
C9 |
H9C3 |
H9C2 |
245.8 |
241.0 |