PDB Chemical Component TYS
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for TYS
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.464 |
1.468 |
| N |
H |
0.999 |
1.009 |
| N |
H2 |
1.000 |
1.008 |
| CA |
CB |
1.535 |
1.530 |
| CA |
C |
1.520 |
1.508 |
| CA |
HA |
1.100 |
1.089 |
| CB |
CG |
1.523 |
1.508 |
| CB |
HB2 |
1.100 |
1.090 |
| CB |
HB3 |
1.100 |
1.091 |
| CG |
CD1 |
1.389 |
1.382 |
| CG |
CD2 |
1.381 |
1.382 |
| CD1 |
CE1 |
1.372 |
1.382 |
| CD1 |
HD1 |
1.080 |
1.080 |
| CD2 |
CE2 |
1.377 |
1.382 |
| CD2 |
HD2 |
1.080 |
1.081 |
| CE1 |
CZ |
1.380 |
1.387 |
| CE1 |
HE1 |
1.080 |
1.080 |
| CE2 |
CZ |
1.382 |
1.387 |
| CE2 |
HE2 |
1.080 |
1.080 |
| CZ |
OH |
1.235 |
1.359 |
| OH |
S |
1.450 |
1.522 |
| S |
O1 |
1.438 |
1.421 |
| S |
O2 |
1.433 |
1.421 |
| S |
O3 |
1.434 |
1.522 |
| O3 |
HO3 |
0.950 |
0.967 |
| C |
O |
1.234 |
1.208 |
| C |
OXT |
1.327 |
1.343 |
| OXT |
HXT |
0.951 |
0.967 |
Bond Angles for TYS
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.1 |
| N |
CA |
CB |
108.9 |
109.5 |
| N |
CA |
C |
116.3 |
109.5 |
| N |
CA |
HA |
108.0 |
109.5 |
| H |
N |
H2 |
109.4 |
111.0 |
| CB |
CA |
C |
108.8 |
109.4 |
| CB |
CA |
HA |
107.2 |
109.5 |
| CA |
CB |
CG |
113.5 |
109.4 |
| CA |
CB |
HB2 |
108.5 |
109.5 |
| CA |
CB |
HB3 |
108.4 |
109.5 |
| C |
CA |
HA |
107.4 |
109.5 |
| CA |
C |
O |
122.5 |
120.0 |
| CA |
C |
OXT |
114.2 |
120.0 |
| CG |
CB |
HB2 |
108.4 |
109.5 |
| CG |
CB |
HB3 |
108.4 |
109.5 |
| CB |
CG |
CD1 |
119.8 |
119.9 |
| CB |
CG |
CD2 |
119.1 |
120.0 |
| HB2 |
CB |
HB3 |
109.4 |
109.5 |
| CD1 |
CG |
CD2 |
121.1 |
120.1 |
| CG |
CD1 |
CE1 |
120.1 |
120.1 |
| CG |
CD1 |
HD1 |
119.9 |
120.0 |
| CG |
CD2 |
CE2 |
119.1 |
120.1 |
| CG |
CD2 |
HD2 |
120.5 |
120.0 |
| CE1 |
CD1 |
HD1 |
120.0 |
119.9 |
| CD1 |
CE1 |
CZ |
118.3 |
119.9 |
| CD1 |
CE1 |
HE1 |
120.8 |
120.1 |
| CE2 |
CD2 |
HD2 |
120.5 |
120.0 |
| CD2 |
CE2 |
CZ |
119.3 |
119.9 |
| CD2 |
CE2 |
HE2 |
120.4 |
120.0 |
| CZ |
CE1 |
HE1 |
120.9 |
120.0 |
| CE1 |
CZ |
CE2 |
122.2 |
119.9 |
| CE1 |
CZ |
OH |
118.8 |
120.1 |
| CZ |
CE2 |
HE2 |
120.3 |
120.0 |
| CE2 |
CZ |
OH |
119.0 |
120.0 |
| CZ |
OH |
S |
120.0 |
114.0 |
| OH |
S |
O1 |
110.6 |
106.4 |
| OH |
S |
O2 |
112.8 |
106.4 |
| OH |
S |
O3 |
108.4 |
107.2 |
| O1 |
S |
O2 |
109.9 |
123.2 |
| O1 |
S |
O3 |
106.6 |
106.4 |
| O2 |
S |
O3 |
108.3 |
106.4 |
| S |
O3 |
HO3 |
109.5 |
114.0 |
| O |
C |
OXT |
123.2 |
120.1 |
| C |
OXT |
HXT |
109.5 |
116.9 |
Torsion Angles for TYS
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| CB |
CA |
N |
C |
236.8 |
240.1 |
| CB |
CA |
N |
HA |
116.1 |
120.0 |
| N |
CA |
CB |
CG |
295.7 |
295.0 |
| N |
CA |
CB |
HB2 |
56.4 |
55.0 |
| N |
CA |
CB |
HB3 |
175.1 |
175.0 |
| C |
CA |
N |
HA |
239.3 |
240.0 |
| N |
CA |
C |
O |
169.0 |
340.1 |
| N |
CA |
C |
OXT |
346.0 |
160.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| H |
N |
CA |
CB |
180.0 |
176.1 |
| H |
N |
CA |
C |
303.2 |
296.0 |
| H |
N |
CA |
HA |
64.0 |
56.0 |
| CA |
N |
H2 |
H |
240.0 |
236.1 |
| H2 |
N |
CA |
CB |
300.0 |
300.0 |
| H2 |
N |
CA |
C |
63.2 |
60.0 |
| H2 |
N |
CA |
HA |
183.9 |
180.0 |
| CB |
CA |
N |
H |
180.0 |
176.1 |
| CB |
CA |
N |
H2 |
300.0 |
300.0 |
| N |
CA |
CB |
C |
127.6 |
120.0 |
| N |
CA |
CB |
HA |
243.4 |
239.9 |
| C |
CA |
CB |
HA |
115.8 |
120.0 |
| CB |
CA |
C |
O |
292.3 |
100.0 |
| CB |
CA |
C |
OXT |
109.3 |
280.0 |
| CG |
CB |
CA |
HB2 |
239.4 |
240.0 |
| CG |
CB |
CA |
HB3 |
120.6 |
120.0 |
| CA |
CB |
CG |
CD1 |
302.5 |
90.0 |
| CA |
CB |
CG |
CD2 |
123.6 |
269.7 |
| HB2 |
CB |
CA |
HB3 |
241.2 |
240.0 |
| C |
CA |
N |
H |
303.2 |
296.0 |
| C |
CA |
N |
H2 |
63.2 |
60.0 |
| N |
CA |
C |
CB |
236.7 |
240.0 |
| N |
CA |
C |
HA |
121.1 |
120.0 |
| CB |
CA |
C |
HA |
244.4 |
240.0 |
| C |
CA |
CB |
CG |
168.1 |
175.0 |
| C |
CA |
CB |
HB2 |
288.7 |
295.0 |
| C |
CA |
CB |
HB3 |
47.5 |
55.0 |
| O |
C |
CA |
OXT |
183.0 |
180.1 |
| CA |
C |
OXT |
HXT |
183.0 |
180.0 |
| HA |
CA |
N |
H |
64.0 |
56.0 |
| HA |
CA |
N |
H2 |
183.9 |
180.0 |
| N |
CA |
HA |
CB |
117.2 |
120.0 |
| N |
CA |
HA |
C |
233.9 |
240.0 |
| CB |
CA |
HA |
C |
116.7 |
119.9 |
| HA |
CA |
CB |
CG |
52.3 |
55.0 |
| HA |
CA |
CB |
HB2 |
173.0 |
175.0 |
| HA |
CA |
CB |
HB3 |
291.7 |
295.0 |
| HA |
CA |
C |
O |
47.9 |
220.0 |
| HA |
CA |
C |
OXT |
225.0 |
39.9 |
| CG |
CB |
CA |
C |
168.1 |
175.0 |
| CG |
CB |
CA |
HA |
52.3 |
55.0 |
| CA |
CB |
CG |
HB2 |
120.6 |
120.0 |
| CA |
CB |
CG |
HB3 |
239.4 |
240.0 |
| HB2 |
CB |
CG |
HB3 |
118.8 |
120.0 |
| CD1 |
CG |
CB |
CD2 |
178.9 |
180.2 |
| CB |
CG |
CD1 |
CE1 |
179.7 |
180.0 |
| CB |
CG |
CD1 |
HD1 |
359.7 |
0.0 |
| CB |
CG |
CD2 |
CE2 |
180.0 |
180.0 |
| CB |
CG |
CD2 |
HD2 |
0.0 |
360.0 |
| HB2 |
CB |
CA |
C |
288.7 |
295.0 |
| HB2 |
CB |
CA |
HA |
173.0 |
175.0 |
| CA |
CB |
HB2 |
CG |
236.3 |
240.0 |
| CA |
CB |
HB2 |
HB3 |
118.1 |
120.0 |
| CG |
CB |
HB2 |
HB3 |
241.9 |
240.0 |
| HB2 |
CB |
CG |
CD1 |
181.9 |
330.0 |
| HB2 |
CB |
CG |
CD2 |
3.0 |
149.8 |
| HB3 |
CB |
CA |
C |
47.5 |
55.0 |
| HB3 |
CB |
CA |
HA |
291.7 |
295.0 |
| CA |
CB |
HB3 |
CG |
123.7 |
120.0 |
| CA |
CB |
HB3 |
HB2 |
241.9 |
240.0 |
| CG |
CB |
HB3 |
HB2 |
118.1 |
120.0 |
| HB3 |
CB |
CG |
CD1 |
63.1 |
210.0 |
| HB3 |
CB |
CG |
CD2 |
244.2 |
29.7 |
| CD1 |
CG |
CB |
HB2 |
181.9 |
330.0 |
| CD1 |
CG |
CB |
HB3 |
63.1 |
210.0 |
| CB |
CG |
CD1 |
CD2 |
181.1 |
179.8 |
| CD1 |
CG |
CD2 |
CE2 |
1.1 |
359.8 |
| CD1 |
CG |
CD2 |
HD2 |
181.1 |
179.7 |
| CE1 |
CD1 |
CG |
HD1 |
180.0 |
179.9 |
| CG |
CD1 |
CE1 |
CZ |
1.2 |
0.1 |
| CG |
CD1 |
CE1 |
HE1 |
181.3 |
179.9 |
| CD2 |
CG |
CB |
HB2 |
3.0 |
149.8 |
| CD2 |
CG |
CB |
HB3 |
244.2 |
29.7 |
| CB |
CG |
CD2 |
CD1 |
178.9 |
180.2 |
| CD2 |
CG |
CD1 |
CE1 |
358.6 |
0.2 |
| CD2 |
CG |
CD1 |
HD1 |
178.6 |
180.3 |
| CE2 |
CD2 |
CG |
HD2 |
180.0 |
180.0 |
| CG |
CD2 |
CE2 |
CZ |
359.4 |
359.9 |
| CG |
CD2 |
CE2 |
HE2 |
179.3 |
180.0 |
| CE1 |
CD1 |
CG |
CD2 |
358.6 |
0.2 |
| CG |
CD1 |
CE1 |
HD1 |
180.0 |
180.1 |
| CZ |
CE1 |
CD1 |
HE1 |
180.0 |
180.1 |
| CD1 |
CE1 |
CZ |
CE2 |
359.2 |
359.6 |
| CD1 |
CE1 |
CZ |
OH |
179.4 |
180.0 |
| HD1 |
CD1 |
CG |
CD2 |
178.6 |
180.3 |
| CG |
CD1 |
HD1 |
CE1 |
180.0 |
179.9 |
| HD1 |
CD1 |
CE1 |
CZ |
181.2 |
180.0 |
| HD1 |
CD1 |
CE1 |
HE1 |
1.3 |
359.9 |
| CG |
CD2 |
CE2 |
HD2 |
180.0 |
180.0 |
| CE1 |
CZ |
CE2 |
CD2 |
0.5 |
0.3 |
| CZ |
CE2 |
CD2 |
HE2 |
180.0 |
180.0 |
| CD2 |
CE2 |
CZ |
OH |
180.3 |
180.0 |
| CG |
CD2 |
HD2 |
CE2 |
180.0 |
180.0 |
| HD2 |
CD2 |
CE2 |
CZ |
179.4 |
180.0 |
| HD2 |
CD2 |
CE2 |
HE2 |
359.3 |
360.0 |
| CZ |
CE1 |
CD1 |
HD1 |
181.2 |
180.0 |
| CD1 |
CE1 |
CZ |
HE1 |
180.0 |
179.9 |
| CD2 |
CE2 |
CZ |
CE1 |
0.5 |
0.3 |
| CE1 |
CZ |
CE2 |
HE2 |
180.5 |
180.3 |
| CE2 |
CZ |
CE1 |
OH |
179.8 |
179.7 |
| CE1 |
CZ |
OH |
S |
265.0 |
89.9 |
| HE1 |
CE1 |
CD1 |
HD1 |
1.3 |
359.9 |
| CD1 |
CE1 |
HE1 |
CZ |
180.0 |
180.1 |
| HE1 |
CE1 |
CZ |
CE2 |
179.2 |
179.8 |
| HE1 |
CE1 |
CZ |
OH |
359.4 |
0.1 |
| CZ |
CE2 |
CD2 |
HD2 |
179.4 |
180.0 |
| CD2 |
CE2 |
CZ |
HE2 |
180.0 |
180.0 |
| CE2 |
CZ |
CE1 |
HE1 |
179.2 |
179.8 |
| CE1 |
CZ |
CE2 |
OH |
180.2 |
180.3 |
| CE2 |
CZ |
OH |
S |
85.2 |
270.3 |
| HE2 |
CE2 |
CD2 |
HD2 |
359.3 |
360.0 |
| CD2 |
CE2 |
HE2 |
CZ |
180.0 |
180.0 |
| HE2 |
CE2 |
CZ |
OH |
0.3 |
0.0 |
| OH |
CZ |
CE1 |
HE1 |
359.4 |
0.1 |
| CE1 |
CZ |
OH |
CE2 |
179.8 |
179.7 |
| OH |
CZ |
CE2 |
HE2 |
0.3 |
0.0 |
| CZ |
OH |
S |
O1 |
65.5 |
188.5 |
| CZ |
OH |
S |
O2 |
302.0 |
321.5 |
| CZ |
OH |
S |
O3 |
182.1 |
75.0 |
| O1 |
S |
OH |
O2 |
123.6 |
227.0 |
| O1 |
S |
OH |
O3 |
243.5 |
113.5 |
| O2 |
S |
OH |
O3 |
119.9 |
246.5 |
| OH |
S |
O3 |
HO3 |
240.9 |
180.0 |
| OH |
S |
O1 |
O2 |
234.8 |
123.0 |
| OH |
S |
O1 |
O3 |
117.7 |
245.9 |
| O2 |
S |
O1 |
O3 |
242.9 |
123.0 |
| O1 |
S |
O3 |
HO3 |
360.0 |
66.5 |
| OH |
S |
O2 |
O1 |
123.9 |
237.0 |
| OH |
S |
O2 |
O3 |
240.0 |
114.1 |
| O1 |
S |
O2 |
O3 |
116.1 |
237.0 |
| O2 |
S |
O3 |
HO3 |
118.2 |
293.5 |
| OH |
S |
O3 |
O1 |
240.9 |
113.5 |
| OH |
S |
O3 |
O2 |
122.7 |
246.5 |
| O1 |
S |
O3 |
O2 |
241.8 |
133.0 |
| O |
C |
CA |
HA |
47.9 |
220.0 |
| CA |
C |
O |
OXT |
176.8 |
179.9 |
| O |
C |
OXT |
HXT |
360.0 |
360.0 |
| OXT |
C |
CA |
HA |
225.0 |
39.9 |
| CA |
C |
OXT |
O |
183.0 |
180.1 |