PDB Chemical Component TYQ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for TYQ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.470 |
1.469 |
| N |
H |
1.019 |
1.009 |
| N |
H2 |
1.020 |
1.010 |
| CA |
C |
1.519 |
1.507 |
| CA |
CB |
1.535 |
1.529 |
| CA |
HA |
1.115 |
1.090 |
| C |
O |
1.232 |
1.208 |
| C |
OXT |
1.326 |
1.341 |
| CB |
CG |
1.502 |
1.506 |
| CB |
HB2 |
1.116 |
1.089 |
| CB |
HB3 |
1.115 |
1.090 |
| CG |
CD1 |
1.399 |
1.386 |
| CG |
CD2 |
1.386 |
1.382 |
| CD1 |
CE1 |
1.389 |
1.387 |
| CD1 |
OZ |
1.373 |
1.360 |
| CD2 |
CE2 |
1.366 |
1.387 |
| CD2 |
HD2 |
1.103 |
1.080 |
| CE1 |
CZ |
1.384 |
1.385 |
| CE1 |
HE1 |
1.103 |
1.081 |
| CE2 |
CZ |
1.372 |
1.392 |
| CE2 |
N5 |
1.460 |
1.402 |
| CZ |
OH |
1.370 |
1.360 |
| OZ |
HZ |
0.950 |
0.968 |
| N5 |
HN51 |
1.019 |
0.970 |
| N5 |
HN52 |
1.020 |
0.970 |
| OH |
HH |
0.949 |
0.966 |
| OXT |
HXT |
0.951 |
0.967 |
Bond Angles for TYQ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
112.7 |
106.7 |
| CA |
N |
H2 |
111.0 |
106.7 |
| N |
CA |
C |
112.7 |
109.5 |
| N |
CA |
CB |
111.8 |
109.5 |
| N |
CA |
HA |
104.4 |
109.4 |
| H |
N |
H2 |
111.1 |
106.7 |
| C |
CA |
CB |
105.2 |
109.5 |
| C |
CA |
HA |
111.1 |
109.4 |
| CA |
C |
O |
121.0 |
120.0 |
| CA |
C |
OXT |
115.4 |
120.1 |
| CB |
CA |
HA |
112.0 |
109.5 |
| CA |
CB |
CG |
116.5 |
109.5 |
| CA |
CB |
HB2 |
109.7 |
109.4 |
| CA |
CB |
HB3 |
109.7 |
109.5 |
| O |
C |
OXT |
123.6 |
119.9 |
| C |
OXT |
HXT |
115.4 |
120.1 |
| CG |
CB |
HB2 |
109.7 |
109.5 |
| CG |
CB |
HB3 |
109.6 |
109.5 |
| CB |
CG |
CD1 |
121.6 |
119.9 |
| CB |
CG |
CD2 |
119.5 |
120.0 |
| HB2 |
CB |
HB3 |
100.5 |
109.5 |
| CD1 |
CG |
CD2 |
118.9 |
120.1 |
| CG |
CD1 |
CE1 |
120.0 |
120.1 |
| CG |
CD1 |
OZ |
119.7 |
120.0 |
| CG |
CD2 |
CE2 |
120.8 |
120.1 |
| CG |
CD2 |
HD2 |
120.3 |
120.0 |
| CE1 |
CD1 |
OZ |
120.3 |
120.0 |
| CD1 |
CE1 |
CZ |
119.5 |
120.0 |
| CD1 |
CE1 |
HE1 |
120.4 |
120.0 |
| CD1 |
OZ |
HZ |
119.8 |
106.8 |
| CE2 |
CD2 |
HD2 |
118.9 |
120.0 |
| CD2 |
CE2 |
CZ |
120.4 |
119.9 |
| CD2 |
CE2 |
N5 |
119.3 |
120.0 |
| CZ |
CE1 |
HE1 |
120.1 |
120.0 |
| CE1 |
CZ |
CE2 |
120.4 |
119.9 |
| CE1 |
CZ |
OH |
121.1 |
120.0 |
| CZ |
CE2 |
N5 |
120.3 |
120.0 |
| CE2 |
CZ |
OH |
118.5 |
120.1 |
| CE2 |
N5 |
HN51 |
119.2 |
120.0 |
| CE2 |
N5 |
HN52 |
108.7 |
120.1 |
| CZ |
OH |
HH |
121.1 |
106.8 |
| HN51 |
N5 |
HN52 |
108.7 |
120.0 |
Torsion Angles for TYQ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
125.3 |
113.8 |
| C |
CA |
N |
CB |
118.2 |
120.1 |
| C |
CA |
N |
HA |
239.4 |
240.1 |
| N |
CA |
C |
O |
323.8 |
330.0 |
| N |
CA |
C |
OXT |
145.8 |
150.0 |
| CB |
CA |
N |
HA |
121.2 |
120.0 |
| N |
CA |
CB |
CG |
316.7 |
300.1 |
| N |
CA |
CB |
HB2 |
82.0 |
60.0 |
| N |
CA |
CB |
HB3 |
191.4 |
180.0 |
| CA |
N |
H |
H2 |
234.8 |
246.3 |
| H |
N |
CA |
C |
180.0 |
173.8 |
| H |
N |
CA |
CB |
61.8 |
53.7 |
| H |
N |
CA |
HA |
300.6 |
293.7 |
| CA |
N |
H2 |
H |
126.2 |
113.8 |
| H2 |
N |
CA |
C |
54.7 |
60.1 |
| H2 |
N |
CA |
CB |
296.5 |
300.0 |
| H2 |
N |
CA |
HA |
175.3 |
180.0 |
| C |
CA |
N |
H |
180.0 |
173.8 |
| C |
CA |
N |
H2 |
54.7 |
60.1 |
| N |
CA |
C |
CB |
238.0 |
239.9 |
| N |
CA |
C |
HA |
116.7 |
119.9 |
| CB |
CA |
C |
HA |
238.7 |
240.0 |
| C |
CA |
CB |
CG |
194.1 |
180.0 |
| C |
CA |
CB |
HB2 |
319.4 |
300.0 |
| C |
CA |
CB |
HB3 |
68.9 |
60.0 |
| O |
C |
CA |
OXT |
178.0 |
180.0 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| CB |
CA |
N |
H |
61.8 |
53.7 |
| CB |
CA |
N |
H2 |
296.5 |
300.0 |
| N |
CA |
CB |
C |
122.6 |
120.1 |
| N |
CA |
CB |
HA |
243.3 |
240.0 |
| C |
CA |
CB |
HA |
120.7 |
120.0 |
| CB |
CA |
C |
O |
85.8 |
90.0 |
| CB |
CA |
C |
OXT |
267.8 |
270.1 |
| CG |
CB |
CA |
HB2 |
234.7 |
240.0 |
| CG |
CB |
CA |
HB3 |
125.3 |
120.0 |
| CA |
CB |
CG |
CD1 |
279.8 |
269.7 |
| CA |
CB |
CG |
CD2 |
98.6 |
90.0 |
| HB2 |
CB |
CA |
HB3 |
250.6 |
240.0 |
| HA |
CA |
N |
H |
300.6 |
293.7 |
| HA |
CA |
N |
H2 |
175.3 |
180.0 |
| N |
CA |
HA |
C |
238.3 |
240.0 |
| N |
CA |
HA |
CB |
121.1 |
120.0 |
| C |
CA |
HA |
CB |
242.8 |
240.0 |
| HA |
CA |
C |
O |
207.1 |
210.1 |
| HA |
CA |
C |
OXT |
29.1 |
30.1 |
| HA |
CA |
CB |
CG |
73.4 |
60.0 |
| HA |
CA |
CB |
HB2 |
198.7 |
180.0 |
| HA |
CA |
CB |
HB3 |
308.1 |
300.0 |
| O |
C |
CA |
CB |
85.8 |
90.0 |
| O |
C |
CA |
HA |
207.1 |
210.1 |
| CA |
C |
O |
OXT |
182.1 |
180.0 |
| O |
C |
OXT |
HXT |
2.0 |
0.1 |
| OXT |
C |
CA |
CB |
267.8 |
270.1 |
| OXT |
C |
CA |
HA |
29.1 |
30.1 |
| CA |
C |
OXT |
O |
178.0 |
180.0 |
| CG |
CB |
CA |
HA |
73.4 |
60.0 |
| CA |
CB |
CG |
HB2 |
125.3 |
120.0 |
| CA |
CB |
CG |
HB3 |
234.7 |
240.0 |
| HB2 |
CB |
CG |
HB3 |
109.4 |
120.0 |
| CD1 |
CG |
CB |
CD2 |
181.2 |
179.7 |
| CB |
CG |
CD1 |
CE1 |
178.7 |
179.8 |
| CB |
CG |
CD1 |
OZ |
358.3 |
0.2 |
| CB |
CG |
CD2 |
CE2 |
181.4 |
180.0 |
| CB |
CG |
CD2 |
HD2 |
1.4 |
359.9 |
| HB2 |
CB |
CA |
HA |
198.7 |
180.0 |
| CA |
CB |
HB2 |
CG |
230.8 |
240.0 |
| CA |
CB |
HB2 |
HB3 |
115.4 |
120.0 |
| CG |
CB |
HB2 |
HB3 |
244.6 |
240.0 |
| HB2 |
CB |
CG |
CD1 |
154.5 |
149.8 |
| HB2 |
CB |
CG |
CD2 |
333.3 |
330.1 |
| HB3 |
CB |
CA |
HA |
308.1 |
300.0 |
| CA |
CB |
HB3 |
CG |
129.1 |
120.0 |
| CA |
CB |
HB3 |
HB2 |
244.5 |
240.0 |
| CG |
CB |
HB3 |
HB2 |
115.4 |
120.0 |
| HB3 |
CB |
CG |
CD1 |
45.0 |
29.7 |
| HB3 |
CB |
CG |
CD2 |
223.8 |
210.0 |
| CD1 |
CG |
CB |
HB2 |
154.5 |
149.8 |
| CD1 |
CG |
CB |
HB3 |
45.0 |
29.7 |
| CB |
CG |
CD1 |
CD2 |
178.8 |
180.3 |
| CD1 |
CG |
CD2 |
CE2 |
0.3 |
0.3 |
| CD1 |
CG |
CD2 |
HD2 |
180.3 |
180.2 |
| CE1 |
CD1 |
CG |
OZ |
180.4 |
179.6 |
| CG |
CD1 |
CE1 |
CZ |
359.9 |
0.5 |
| CG |
CD1 |
CE1 |
HE1 |
179.8 |
180.2 |
| CG |
CD1 |
OZ |
HZ |
180.0 |
269.5 |
| CD2 |
CG |
CB |
HB2 |
333.3 |
330.1 |
| CD2 |
CG |
CB |
HB3 |
223.8 |
210.0 |
| CB |
CG |
CD2 |
CD1 |
181.1 |
179.7 |
| CD2 |
CG |
CD1 |
CE1 |
359.9 |
359.5 |
| CD2 |
CG |
CD1 |
OZ |
179.5 |
179.9 |
| CE2 |
CD2 |
CG |
HD2 |
180.0 |
180.1 |
| CG |
CD2 |
CE2 |
CZ |
359.8 |
359.9 |
| CG |
CD2 |
CE2 |
N5 |
178.4 |
180.0 |
| CE1 |
CD1 |
CG |
CD2 |
359.9 |
359.5 |
| CG |
CD1 |
CE1 |
OZ |
179.6 |
180.4 |
| CE1 |
CD1 |
OZ |
HZ |
359.6 |
90.0 |
| CZ |
CE1 |
CD1 |
HE1 |
180.0 |
180.3 |
| CD1 |
CE1 |
CZ |
CE2 |
0.2 |
359.7 |
| CD1 |
CE1 |
CZ |
OH |
181.3 |
179.8 |
| OZ |
CD1 |
CG |
CD2 |
179.5 |
179.9 |
| CG |
CD1 |
OZ |
CE1 |
180.4 |
179.6 |
| OZ |
CD1 |
CE1 |
CZ |
180.3 |
180.1 |
| OZ |
CD1 |
CE1 |
HE1 |
0.3 |
359.8 |
| CG |
CD2 |
CE2 |
HD2 |
180.0 |
179.9 |
| CE1 |
CZ |
CE2 |
CD2 |
360.0 |
0.1 |
| CZ |
CE2 |
CD2 |
N5 |
181.3 |
180.0 |
| CD2 |
CE2 |
CZ |
OH |
178.9 |
180.0 |
| CD2 |
CE2 |
N5 |
HN51 |
180.0 |
180.0 |
| CD2 |
CE2 |
N5 |
HN52 |
54.8 |
0.0 |
| CG |
CD2 |
HD2 |
CE2 |
180.0 |
180.1 |
| HD2 |
CD2 |
CE2 |
CZ |
179.8 |
180.0 |
| HD2 |
CD2 |
CE2 |
N5 |
358.4 |
0.1 |
| CZ |
CE1 |
CD1 |
OZ |
180.3 |
180.1 |
| CD1 |
CE1 |
CZ |
HE1 |
180.0 |
179.7 |
| CD2 |
CE2 |
CZ |
CE1 |
360.0 |
0.1 |
| CE1 |
CZ |
CE2 |
N5 |
181.3 |
180.0 |
| CE2 |
CZ |
CE1 |
OH |
178.9 |
179.9 |
| CE1 |
CZ |
OH |
HH |
180.0 |
270.0 |
| HE1 |
CE1 |
CD1 |
OZ |
0.3 |
359.8 |
| CD1 |
CE1 |
HE1 |
CZ |
180.0 |
180.3 |
| HE1 |
CE1 |
CZ |
CE2 |
180.2 |
180.0 |
| HE1 |
CE1 |
CZ |
OH |
1.3 |
0.1 |
| CZ |
CE2 |
CD2 |
HD2 |
179.8 |
180.0 |
| CD2 |
CE2 |
CZ |
N5 |
178.6 |
180.0 |
| CE2 |
CZ |
CE1 |
HE1 |
180.2 |
180.0 |
| CE1 |
CZ |
CE2 |
OH |
181.1 |
180.1 |
| CZ |
CE2 |
N5 |
HN51 |
358.6 |
0.0 |
| CZ |
CE2 |
N5 |
HN52 |
233.4 |
180.1 |
| CE2 |
CZ |
OH |
HH |
1.1 |
90.0 |
| N5 |
CE2 |
CD2 |
HD2 |
358.4 |
0.1 |
| CD2 |
CE2 |
N5 |
CZ |
181.3 |
180.0 |
| N5 |
CE2 |
CZ |
OH |
0.3 |
360.0 |
| HN51 |
N5 |
CE2 |
HN52 |
125.2 |
180.0 |
| OH |
CZ |
CE1 |
HE1 |
1.3 |
0.1 |
| CE1 |
CZ |
OH |
CE2 |
178.9 |
179.9 |
| OH |
CZ |
CE2 |
N5 |
0.3 |
360.0 |
| CE2 |
N5 |
HN51 |
HN52 |
234.8 |
180.0 |
| CE2 |
N5 |
HN52 |
HN51 |
131.2 |
180.0 |