PDB Chemical Component TYN

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TYN

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N	CA	1.460	1.469
N	H	1.020	1.009
N	H2	1.020	1.009
CA	CB	1.531	1.528
CA	C	1.528	1.507
CA	HA	1.116	1.091
CB	CG	1.517	1.507
CB	HB2	1.115	1.090
CB	HB3	1.115	1.090
CG	CD1	1.403	1.382
CG	CD2	1.398	1.383
CD1	CE1	1.404	1.381
CD1	HD1	1.103	1.080
CE1	CZ	1.400	1.387
CE1	HE1	1.104	1.080
CD2	CE2	1.398	1.381
CD2	HD2	1.102	1.080
CE2	CZ	1.390	1.387
CE2	HE2	1.103	1.080
CZ	OC	1.392	1.359
OC	C5	1.382	1.361
C	O	1.231	1.207
C	OXT	1.329	1.342
OXT	HXT	0.950	0.966
O1	N1	1.380	1.473
O1	N2	1.381	1.475
N1	C1	1.326	1.410
N1	HN1	1.020	1.008
N2	C6	1.310	1.409
N2	HN2	1.020	1.008
N3	C2	1.467	1.403
N3	HN31	1.020	0.970
N3	HN32	1.021	0.971
C1	C2	1.438	1.393
C1	C6	1.431	1.390
C2	C3	1.352	1.387
C3	C4	1.440	1.383
C3	H3	1.102	1.080
C4	C5	1.357	1.386
C4	H4	1.102	1.079
C5	C6	1.427	1.392

Bond Angles for TYN

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
CA	N	H	111.9	106.7
CA	N	H2	111.2	106.7
N	CA	CB	111.9	109.5
N	CA	C	106.4	109.5
N	CA	HA	110.1	109.4
H	N	H2	111.3	106.8
CB	CA	C	109.7	109.5
CB	CA	HA	106.7	109.5
CA	CB	CG	113.2	109.5
CA	CB	HB2	110.9	109.5
CA	CB	HB3	110.9	109.5
C	CA	HA	112.2	109.5
CA	C	O	120.7	120.0
CA	C	OXT	116.0	120.0
CG	CB	HB2	110.8	109.5
CG	CB	HB3	110.8	109.5
CB	CG	CD1	121.9	119.9
CB	CG	CD2	120.1	120.0
HB2	CB	HB3	99.5	109.4
CD1	CG	CD2	118.0	120.1
CG	CD1	CE1	121.0	120.0
CG	CD1	HD1	119.5	120.0
CG	CD2	CE2	121.5	120.1
CG	CD2	HD2	119.3	120.0
CE1	CD1	HD1	119.5	120.0
CD1	CE1	CZ	119.8	120.0
CD1	CE1	HE1	120.2	120.0
CZ	CE1	HE1	120.0	120.1
CE1	CZ	CE2	119.8	119.9
CE1	CZ	OC	121.2	120.0
CE2	CD2	HD2	119.2	119.9
CD2	CE2	CZ	119.9	119.9
CD2	CE2	HE2	120.4	120.0
CZ	CE2	HE2	119.7	120.1
CE2	CZ	OC	119.0	120.0
CZ	OC	C5	120.4	106.8
OC	C5	C4	116.9	119.9
OC	C5	C6	124.8	120.0
O	C	OXT	123.3	119.9
C	OXT	HXT	116.0	120.1
N1	O1	N2	112.7	103.3
O1	N1	C1	104.4	105.4
O1	N1	HN1	114.1	106.8
O1	N2	C6	104.3	105.3
O1	N2	HN2	114.1	106.7
C1	N1	HN1	114.2	106.7
N1	C1	C2	133.0	131.2
N1	C1	C6	108.6	109.1
C6	N2	HN2	114.2	106.6
N2	C6	C1	109.9	109.1
N2	C6	C5	129.0	131.1
C2	N3	HN31	120.1	120.0
C2	N3	HN32	108.4	120.0
N3	C2	C1	120.1	120.0
N3	C2	C3	120.6	119.9
HN31	N3	HN32	108.4	120.0
C2	C1	C6	118.4	119.7
C1	C2	C3	119.3	120.1
C1	C6	C5	121.1	119.8
C2	C3	C4	121.6	120.1
C2	C3	H3	115.9	120.0
C4	C3	H3	122.5	119.9
C3	C4	C5	121.3	120.1
C3	C4	H4	122.4	120.0
C5	C4	H4	116.3	119.9
C4	C5	C6	118.3	120.1

Torsion Angles for TYN

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
H	N	CA	H2	125.2	113.8
CB	CA	N	C	240.2	240.0
CB	CA	N	HA	118.4	120.0
N	CA	CB	CG	178.4	300.0
N	CA	CB	HB2	303.6	60.1
N	CA	CB	HB3	53.1	180.0
C	CA	N	HA	238.2	240.0
N	CA	C	O	291.4	330.0
N	CA	C	OXT	110.6	150.0
CA	N	H	H2	234.8	246.2
H	N	CA	CB	180.0	53.8
H	N	CA	C	299.8	173.8
H	N	CA	HA	61.5	293.8
CA	N	H2	H	125.5	113.8
H2	N	CA	CB	54.8	300.0
H2	N	CA	C	174.6	60.0
H2	N	CA	HA	296.3	180.0
CB	CA	N	H	180.0	53.8
CB	CA	N	H2	54.8	300.0
N	CA	CB	C	117.8	120.0
N	CA	CB	HA	239.6	240.0
C	CA	CB	HA	121.8	120.0
CB	CA	C	O	52.6	90.0
CB	CA	C	OXT	231.8	270.0
CG	CB	CA	HB2	234.8	240.0
CG	CB	CA	HB3	125.2	120.0
CA	CB	CG	CD1	36.8	90.0
CA	CB	CG	CD2	216.8	269.7
HB2	CB	CA	HB3	250.4	240.0
C	CA	N	H	299.8	173.8
C	CA	N	H2	174.6	60.0
N	CA	C	CB	238.8	240.0
N	CA	C	HA	120.4	119.9
CB	CA	C	HA	241.6	240.0
C	CA	CB	CG	60.5	180.0
C	CA	CB	HB2	185.8	300.0
C	CA	CB	HB3	295.3	60.0
O	C	CA	OXT	180.8	180.0
CA	C	OXT	HXT	180.0	179.9
HA	CA	N	H	61.5	293.8
HA	CA	N	H2	296.3	180.0
N	CA	HA	CB	121.6	120.0
N	CA	HA	C	241.8	240.0
CB	CA	HA	C	120.2	120.0
HA	CA	CB	CG	298.8	60.0
HA	CA	CB	HB2	64.0	180.0
HA	CA	CB	HB3	173.5	300.0
HA	CA	C	O	170.9	210.0
HA	CA	C	OXT	350.2	30.0
CG	CB	CA	C	60.5	180.0
CG	CB	CA	HA	298.8	60.0
CA	CB	CG	HB2	125.2	120.1
CA	CB	CG	HB3	234.7	240.0
HB2	CB	CG	HB3	109.5	119.9
CD1	CG	CB	CD2	180.0	180.3
CB	CG	CD1	CE1	180.4	180.0
CB	CG	CD1	HD1	0.4	360.0
CB	CG	CD2	CE2	179.6	179.7
CB	CG	CD2	HD2	359.6	0.3
HB2	CB	CA	C	185.8	300.0
HB2	CB	CA	HA	64.0	180.0
CA	CB	HB2	CG	233.5	240.0
CA	CB	HB2	HB3	116.8	120.0
CG	CB	HB2	HB3	243.3	240.1
HB2	CB	CG	CD1	271.6	330.0
HB2	CB	CG	CD2	91.6	149.7
HB3	CB	CA	C	295.3	60.0
HB3	CB	CA	HA	173.5	300.0
CA	CB	HB3	CG	126.5	120.0
CA	CB	HB3	HB2	243.2	240.0
CG	CB	HB3	HB2	116.7	120.0
HB3	CB	CG	CD1	162.0	210.0
HB3	CB	CG	CD2	342.0	29.8
CD1	CG	CB	HB2	271.6	330.0
CD1	CG	CB	HB3	162.0	210.0
CB	CG	CD1	CD2	180.0	179.7
CD1	CG	CD2	CE2	359.6	359.5
CD1	CG	CD2	HD2	179.6	180.0
CE1	CD1	CG	HD1	180.0	180.0
CG	CD1	CE1	CZ	359.6	0.0
CG	CD1	CE1	HE1	179.6	180.0
CD2	CG	CB	HB2	91.6	149.7
CD2	CG	CB	HB3	342.0	29.8
CB	CG	CD2	CD1	180.0	180.3
CD2	CG	CD1	CE1	0.4	0.3
CD2	CG	CD1	HD1	180.4	180.2
CE2	CD2	CG	HD2	180.0	179.5
CG	CD2	CE2	CZ	0.4	0.5
CG	CD2	CE2	HE2	180.4	180.3
CE1	CD1	CG	CD2	0.4	0.3
CG	CD1	CE1	HD1	180.0	180.0
CZ	CE1	CD1	HE1	180.0	180.1
CD1	CE1	CZ	CE2	0.4	0.0
CD1	CE1	CZ	OC	179.4	180.0
HD1	CD1	CG	CD2	180.4	180.2
CG	CD1	HD1	CE1	180.0	180.0
HD1	CD1	CE1	CZ	179.6	180.0
HD1	CD1	CE1	HE1	359.6	360.0
CZ	CE1	CD1	HD1	179.6	180.0
CD1	CE1	CZ	HE1	180.0	179.9
CD2	CE2	CZ	CE1	359.6	359.7
CE1	CZ	CE2	HE2	179.6	180.0
CE2	CZ	CE1	OC	181.1	180.0
CE1	CZ	OC	C5	342.7	265.2
HE1	CE1	CD1	HD1	359.6	360.0
CD1	CE1	HE1	CZ	180.0	180.1
HE1	CE1	CZ	CE2	180.4	180.1
HE1	CE1	CZ	OC	359.4	0.1
CG	CD2	CE2	HD2	180.0	180.5
CE1	CZ	CE2	CD2	359.6	359.7
CZ	CE2	CD2	HE2	180.0	180.3
CD2	CE2	CZ	OC	180.6	179.7
CG	CD2	HD2	CE2	180.0	179.5
HD2	CD2	CE2	CZ	180.4	180.0
HD2	CD2	CE2	HE2	0.4	359.7
CE2	CZ	CE1	HE1	180.4	180.1
CE1	CZ	CE2	OC	179.0	180.0
CZ	CE2	CD2	HD2	180.4	180.0
CD2	CE2	CZ	HE2	180.0	179.7
CE2	CZ	OC	C5	161.7	85.2
HE2	CE2	CD2	HD2	0.4	359.7
CD2	CE2	HE2	CZ	180.0	180.3
HE2	CE2	CZ	OC	0.6	360.0
OC	CZ	CE1	HE1	359.4	0.1
CE1	CZ	OC	CE2	181.1	180.0
OC	CZ	CE2	HE2	0.6	360.0
CZ	OC	C5	C4	293.5	5.6
CZ	OC	C5	C6	114.4	185.3
N2	C6	C5	OC	358.6	0.6
C1	C6	C5	OC	180.4	179.7
C3	C4	C5	OC	180.2	179.9
OC	C5	C4	H4	0.2	0.0
C4	C5	OC	C6	179.1	180.3
O	C	CA	HA	170.9	210.0
CA	C	O	OXT	179.2	180.0
O	C	OXT	HXT	359.2	360.0
OXT	C	CA	HA	350.2	30.0
CA	C	OXT	O	180.8	180.0
N1	O1	N2	C6	0.3	333.0
N1	O1	N2	HN2	235.1	220.1
C1	N1	O1	HN1	125.3	246.7
O1	N1	C1	C2	180.7	162.8
O1	N1	C1	C6	359.0	343.1
N2	O1	N1	C1	0.5	26.7
N2	O1	N1	HN1	235.1	140.0
C6	N2	O1	HN2	125.3	113.0
O1	N2	C6	C1	359.0	17.6
O1	N2	C6	C5	180.7	196.7
C1	N1	O1	N2	0.5	26.7
O1	N1	C1	HN1	234.7	113.3
N2	C6	C1	N1	1.3	359.6
N3	C2	C1	N1	358.6	0.1
C2	C1	N1	C6	181.8	179.7
N1	C1	C2	C3	179.4	180.1
N1	C1	C6	C5	179.8	180.3
HN1	N1	O1	N2	235.1	140.0
O1	N1	HN1	C1	120.0	247.7
HN1	N1	C1	C2	306.0	49.5
HN1	N1	C1	C6	124.3	229.8
OC	C5	C6	N2	358.6	0.6
O1	N2	C6	HN2	234.8	246.9
N1	C1	C6	N2	1.3	359.6
C2	C1	C6	N2	179.9	179.8
C1	C6	N2	C5	178.3	180.8
C4	C5	C6	N2	179.5	180.4
O1	N2	HN2	C6	119.9	112.1
HN2	N2	C6	C1	124.2	130.7
HN2	N2	C6	C5	305.9	309.8
N1	C1	C2	N3	358.6	0.1
HN31	N3	C2	HN32	125.3	179.9
N3	C2	C1	C6	180.5	179.7
C1	C2	N3	C3	180.8	180.0
N3	C2	C3	C4	180.2	180.0
N3	C2	C3	H3	0.2	0.1
C2	N3	HN31	HN32	234.7	180.1
HN31	N3	C2	C1	180.0	180.0
HN31	N3	C2	C3	359.2	360.0
C2	N3	HN32	HN31	131.9	179.9
HN32	N3	C2	C1	54.7	0.1
HN32	N3	C2	C3	233.9	180.0
C2	C1	N1	HN1	306.0	49.5
N1	C1	C2	C6	178.1	180.3
N2	C6	C1	C2	179.9	179.8
C1	C2	N3	HN31	180.0	180.0
C1	C2	N3	HN32	54.7	0.1
N3	C2	C1	C3	179.3	180.0
C2	C1	C6	C5	358.3	0.6
C1	C2	C3	C4	359.4	359.9
C1	C2	C3	H3	179.4	180.0
OC	C5	C6	C1	180.4	179.7
C6	C1	N1	HN1	124.3	229.8
N1	C1	C6	C2	181.5	179.7
C1	C6	N2	HN2	124.2	130.7
N2	C6	C1	C5	181.5	179.3
C6	C1	C2	C3	1.3	359.7
C4	C5	C6	C1	1.3	359.5
C3	C2	N3	HN31	359.2	360.0
C3	C2	N3	HN32	233.9	180.0
N3	C2	C3	C1	180.7	180.0
C3	C2	C1	C6	1.3	359.7
C4	C3	C2	H3	180.0	179.9
C2	C3	C4	C5	0.2	0.1
C2	C3	C4	H4	180.3	180.0
OC	C5	C4	C3	180.2	179.9
C2	C3	C4	H3	180.0	180.1
C5	C4	C3	H4	180.0	180.1
C3	C4	C5	C6	359.4	0.2
C2	C3	H3	C4	180.0	179.9
H3	C3	C4	C5	180.3	180.0
H3	C3	C4	H4	0.3	359.9
OC	C5	C4	C6	180.8	179.7
N2	C6	C5	C4	179.5	180.4
C1	C6	C5	C4	1.3	359.5
C5	C4	C3	H3	180.3	180.0
C3	C4	C5	H4	180.0	179.9
H4	C4	C3	H3	0.3	359.9
C3	C4	H4	C5	180.0	180.1
H4	C4	C5	C6	179.4	180.3
OC	C5	C6	C4	179.1	180.3
C5	C6	N2	HN2	305.9	309.8
N2	C6	C5	C1	178.2	180.9
C6	C5	C4	H4	179.4	180.3