PDB Chemical Component TYI
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for TYI
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.456 |
1.468 |
| N |
H |
1.020 |
1.008 |
| N |
H2 |
1.021 |
1.010 |
| CA |
CB |
1.532 |
1.529 |
| CA |
C |
1.520 |
1.507 |
| CA |
HA |
1.115 |
1.090 |
| CB |
CG |
1.508 |
1.507 |
| CB |
HB2 |
1.115 |
1.090 |
| CB |
HB3 |
1.115 |
1.090 |
| CG |
CD1 |
1.391 |
1.381 |
| CG |
CD2 |
1.386 |
1.383 |
| CD1 |
CE1 |
1.371 |
1.381 |
| CD1 |
HD1 |
1.103 |
1.080 |
| CE1 |
CZ |
1.368 |
1.388 |
| CE1 |
I1 |
2.097 |
2.095 |
| CD2 |
CE2 |
1.385 |
1.382 |
| CD2 |
HD2 |
1.103 |
1.080 |
| CE2 |
CZ |
1.377 |
1.387 |
| CE2 |
I2 |
2.398 |
2.094 |
| CZ |
OH |
1.377 |
1.359 |
| OH |
HH |
0.950 |
0.966 |
| C |
O |
1.236 |
1.208 |
| C |
OXT |
1.326 |
1.342 |
| OXT |
HXT |
0.949 |
0.967 |
Bond Angles for TYI
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
109.3 |
106.7 |
| CA |
N |
H2 |
112.3 |
106.6 |
| N |
CA |
CB |
109.3 |
109.5 |
| N |
CA |
C |
112.0 |
109.5 |
| N |
CA |
HA |
107.7 |
109.5 |
| H |
N |
H2 |
112.3 |
106.7 |
| CB |
CA |
C |
109.0 |
109.5 |
| CB |
CA |
HA |
110.8 |
109.5 |
| CA |
CB |
CG |
112.8 |
109.5 |
| CA |
CB |
HB2 |
111.0 |
109.5 |
| CA |
CB |
HB3 |
111.0 |
109.5 |
| C |
CA |
HA |
108.1 |
109.4 |
| CA |
C |
O |
120.1 |
120.1 |
| CA |
C |
OXT |
115.8 |
120.0 |
| CG |
CB |
HB2 |
111.0 |
109.5 |
| CG |
CB |
HB3 |
111.0 |
109.5 |
| CB |
CG |
CD1 |
121.0 |
120.0 |
| CB |
CG |
CD2 |
120.8 |
119.9 |
| HB2 |
CB |
HB3 |
99.3 |
109.4 |
| CD1 |
CG |
CD2 |
118.1 |
120.1 |
| CG |
CD1 |
CE1 |
118.6 |
120.1 |
| CG |
CD1 |
HD1 |
121.4 |
120.0 |
| CG |
CD2 |
CE2 |
122.5 |
120.0 |
| CG |
CD2 |
HD2 |
118.8 |
120.0 |
| CE1 |
CD1 |
HD1 |
120.0 |
119.9 |
| CD1 |
CE1 |
CZ |
123.4 |
119.9 |
| CD1 |
CE1 |
I1 |
119.9 |
120.0 |
| CZ |
CE1 |
I1 |
116.5 |
120.0 |
| CE1 |
CZ |
CE2 |
118.8 |
119.9 |
| CE1 |
CZ |
OH |
120.8 |
120.0 |
| CE2 |
CD2 |
HD2 |
118.7 |
120.0 |
| CD2 |
CE2 |
CZ |
118.7 |
119.9 |
| CD2 |
CE2 |
I2 |
118.4 |
120.0 |
| CZ |
CE2 |
I2 |
119.0 |
120.0 |
| CE2 |
CZ |
OH |
120.4 |
120.1 |
| CZ |
OH |
HH |
120.8 |
106.9 |
| O |
C |
OXT |
124.2 |
119.9 |
| C |
OXT |
HXT |
115.7 |
120.0 |
Torsion Angles for TYI
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
125.3 |
113.8 |
| CB |
CA |
N |
C |
239.1 |
240.0 |
| CB |
CA |
N |
HA |
120.4 |
120.0 |
| N |
CA |
CB |
CG |
297.1 |
300.1 |
| N |
CA |
CB |
HB2 |
62.3 |
60.1 |
| N |
CA |
CB |
HB3 |
171.8 |
180.0 |
| C |
CA |
N |
HA |
241.3 |
240.0 |
| N |
CA |
C |
O |
256.4 |
330.0 |
| N |
CA |
C |
OXT |
76.1 |
150.0 |
| CA |
N |
H |
H2 |
234.7 |
246.3 |
| H |
N |
CA |
CB |
180.0 |
53.7 |
| H |
N |
CA |
C |
300.9 |
173.7 |
| H |
N |
CA |
HA |
59.6 |
293.7 |
| CA |
N |
H2 |
H |
123.7 |
113.8 |
| H2 |
N |
CA |
CB |
54.7 |
299.9 |
| H2 |
N |
CA |
C |
175.6 |
60.0 |
| H2 |
N |
CA |
HA |
294.3 |
179.9 |
| CB |
CA |
N |
H |
180.0 |
53.7 |
| CB |
CA |
N |
H2 |
54.7 |
299.9 |
| N |
CA |
CB |
C |
122.7 |
120.1 |
| N |
CA |
CB |
HA |
241.5 |
240.0 |
| C |
CA |
CB |
HA |
118.8 |
119.9 |
| CB |
CA |
C |
O |
17.5 |
90.1 |
| CB |
CA |
C |
OXT |
197.2 |
270.0 |
| CG |
CB |
CA |
HB2 |
234.8 |
240.0 |
| CG |
CB |
CA |
HB3 |
125.3 |
120.1 |
| CA |
CB |
CG |
CD1 |
93.3 |
90.0 |
| CA |
CB |
CG |
CD2 |
273.5 |
269.7 |
| HB2 |
CB |
CA |
HB3 |
250.5 |
240.1 |
| C |
CA |
N |
H |
300.9 |
173.7 |
| C |
CA |
N |
H2 |
175.6 |
60.0 |
| N |
CA |
C |
CB |
238.9 |
239.9 |
| N |
CA |
C |
HA |
118.4 |
120.0 |
| CB |
CA |
C |
HA |
239.5 |
240.0 |
| C |
CA |
CB |
CG |
174.3 |
180.0 |
| C |
CA |
CB |
HB2 |
299.5 |
300.0 |
| C |
CA |
CB |
HB3 |
49.0 |
59.9 |
| O |
C |
CA |
OXT |
180.3 |
180.1 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| HA |
CA |
N |
H |
59.6 |
293.7 |
| HA |
CA |
N |
H2 |
294.3 |
179.9 |
| N |
CA |
HA |
CB |
119.5 |
120.0 |
| N |
CA |
HA |
C |
238.8 |
240.0 |
| CB |
CA |
HA |
C |
119.3 |
120.0 |
| HA |
CA |
CB |
CG |
55.5 |
60.1 |
| HA |
CA |
CB |
HB2 |
180.7 |
180.1 |
| HA |
CA |
CB |
HB3 |
290.3 |
300.0 |
| HA |
CA |
C |
O |
138.0 |
210.0 |
| HA |
CA |
C |
OXT |
317.7 |
30.0 |
| CG |
CB |
CA |
C |
174.3 |
180.0 |
| CG |
CB |
CA |
HA |
55.5 |
60.1 |
| CA |
CB |
CG |
HB2 |
125.3 |
120.0 |
| CA |
CB |
CG |
HB3 |
234.7 |
240.0 |
| HB2 |
CB |
CG |
HB3 |
109.5 |
119.9 |
| CD1 |
CG |
CB |
CD2 |
179.7 |
180.3 |
| CB |
CG |
CD1 |
CE1 |
180.1 |
180.0 |
| CB |
CG |
CD1 |
HD1 |
0.1 |
360.0 |
| CB |
CG |
CD2 |
CE2 |
179.9 |
179.7 |
| CB |
CG |
CD2 |
HD2 |
359.8 |
0.3 |
| HB2 |
CB |
CA |
C |
299.5 |
300.0 |
| HB2 |
CB |
CA |
HA |
180.7 |
180.1 |
| CA |
CB |
HB2 |
CG |
233.8 |
240.0 |
| CA |
CB |
HB2 |
HB3 |
116.9 |
120.0 |
| CG |
CB |
HB2 |
HB3 |
243.1 |
240.0 |
| HB2 |
CB |
CG |
CD1 |
328.0 |
330.0 |
| HB2 |
CB |
CG |
CD2 |
148.3 |
149.6 |
| HB3 |
CB |
CA |
C |
49.0 |
59.9 |
| HB3 |
CB |
CA |
HA |
290.3 |
300.0 |
| CA |
CB |
HB3 |
CG |
126.3 |
120.0 |
| CA |
CB |
HB3 |
HB2 |
243.1 |
240.0 |
| CG |
CB |
HB3 |
HB2 |
116.8 |
120.0 |
| HB3 |
CB |
CG |
CD1 |
218.6 |
210.1 |
| HB3 |
CB |
CG |
CD2 |
38.8 |
29.7 |
| CD1 |
CG |
CB |
HB2 |
328.0 |
330.0 |
| CD1 |
CG |
CB |
HB3 |
218.6 |
210.1 |
| CB |
CG |
CD1 |
CD2 |
180.3 |
179.7 |
| CD1 |
CG |
CD2 |
CE2 |
0.1 |
359.3 |
| CD1 |
CG |
CD2 |
HD2 |
180.1 |
180.0 |
| CE1 |
CD1 |
CG |
HD1 |
180.0 |
180.0 |
| CG |
CD1 |
CE1 |
CZ |
0.2 |
360.0 |
| CG |
CD1 |
CE1 |
I1 |
175.0 |
180.0 |
| CD2 |
CG |
CB |
HB2 |
148.3 |
149.6 |
| CD2 |
CG |
CB |
HB3 |
38.8 |
29.7 |
| CB |
CG |
CD2 |
CD1 |
179.7 |
180.3 |
| CD2 |
CG |
CD1 |
CE1 |
359.9 |
0.4 |
| CD2 |
CG |
CD1 |
HD1 |
179.9 |
180.3 |
| CE2 |
CD2 |
CG |
HD2 |
180.0 |
179.4 |
| CG |
CD2 |
CE2 |
CZ |
359.9 |
0.6 |
| CG |
CD2 |
CE2 |
I2 |
157.5 |
180.2 |
| CE1 |
CD1 |
CG |
CD2 |
359.9 |
0.4 |
| CG |
CD1 |
CE1 |
HD1 |
180.0 |
180.0 |
| CZ |
CE1 |
CD1 |
I1 |
185.2 |
180.0 |
| CD1 |
CE1 |
CZ |
CE2 |
359.8 |
360.0 |
| CD1 |
CE1 |
CZ |
OH |
180.2 |
180.1 |
| HD1 |
CD1 |
CG |
CD2 |
179.9 |
180.3 |
| CG |
CD1 |
HD1 |
CE1 |
180.0 |
180.0 |
| HD1 |
CD1 |
CE1 |
CZ |
180.2 |
180.0 |
| HD1 |
CD1 |
CE1 |
I1 |
355.0 |
0.0 |
| CZ |
CE1 |
CD1 |
HD1 |
180.2 |
180.0 |
| CD1 |
CE1 |
CZ |
I1 |
175.0 |
180.0 |
| CD2 |
CE2 |
CZ |
CE1 |
0.2 |
359.7 |
| CE1 |
CZ |
CE2 |
I2 |
202.7 |
180.1 |
| CE2 |
CZ |
CE1 |
OH |
179.6 |
179.9 |
| CE1 |
CZ |
OH |
HH |
179.9 |
89.9 |
| I1 |
CE1 |
CD1 |
HD1 |
355.0 |
0.0 |
| CD1 |
CE1 |
I1 |
CZ |
184.9 |
180.0 |
| I1 |
CE1 |
CZ |
CE2 |
184.8 |
180.0 |
| I1 |
CE1 |
CZ |
OH |
5.2 |
0.0 |
| CG |
CD2 |
CE2 |
HD2 |
180.0 |
180.6 |
| CE1 |
CZ |
CE2 |
CD2 |
0.2 |
359.7 |
| CZ |
CE2 |
CD2 |
I2 |
202.4 |
180.4 |
| CD2 |
CE2 |
CZ |
OH |
179.7 |
179.6 |
| CG |
CD2 |
HD2 |
CE2 |
180.0 |
179.4 |
| HD2 |
CD2 |
CE2 |
CZ |
179.9 |
180.0 |
| HD2 |
CD2 |
CE2 |
I2 |
337.5 |
359.6 |
| CE2 |
CZ |
CE1 |
I1 |
184.8 |
180.0 |
| CE1 |
CZ |
CE2 |
OH |
180.4 |
180.1 |
| CZ |
CE2 |
CD2 |
HD2 |
179.9 |
180.0 |
| CD2 |
CE2 |
CZ |
I2 |
157.5 |
179.6 |
| CE2 |
CZ |
OH |
HH |
0.4 |
270.0 |
| I2 |
CE2 |
CD2 |
HD2 |
337.5 |
359.6 |
| CD2 |
CE2 |
I2 |
CZ |
202.4 |
180.4 |
| I2 |
CE2 |
CZ |
OH |
22.2 |
0.0 |
| OH |
CZ |
CE1 |
I1 |
5.2 |
0.0 |
| CE1 |
CZ |
OH |
CE2 |
179.5 |
179.9 |
| OH |
CZ |
CE2 |
I2 |
22.2 |
0.0 |
| O |
C |
CA |
HA |
138.0 |
210.0 |
| CA |
C |
O |
OXT |
179.7 |
179.9 |
| O |
C |
OXT |
HXT |
359.7 |
360.0 |
| OXT |
C |
CA |
HA |
317.7 |
30.0 |
| CA |
C |
OXT |
O |
180.3 |
180.1 |