PDB Chemical Component TYD

Ideal Model

Chemical Description

Name THYMIDINE-5'-DIPHOSPHATE
Formula C10 H16 N2 O11 P2
Formal charge 0
Molecular weight 402.188 g/mol
Component type NON-POLYMER

Chemical features

Atom count 41
Chiral atom count 4
Chiral atoms PA C4' C3' C1'
Bond count 42
Aromatic bond count 6

Chemical Identifiers

Systematic name (ACDLabs) thymidine 5'-(trihydrogen diphosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methyl phosphono hydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CC1=CN([C@H]2C[C@H](O)[C@@H](CO[P@@](O)(=O)O[P](O)(O)=O)O2)C(=O)NC1=O
SMILES (CACTVS) CC1=CN([CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(O)=O)O2)C(=O)NC1=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO[P@](=O)(O)OP(=O)(O)O)O
InChI descriptor InChI=1S/C10H16N2O11P2/c1-5-3-12(10(15)11-9(5)14)8-2-6(13)7(22-8)4-21-25(19,20)23-24(16,17)18/h3,6-8,13H,2,4H2,1H3,(H,19,20)(H,11,14,15)(H2,16,17,18)/t6-,7+,8+/m0/s1
InChIKey descriptor UJLXYODCHAELLY-XLPZGREQSA-N

Status Information

Last modified 2011-06-04
Created 1999-07-08
Release status REL
Model PDB code 1NDC
Processing site EBI